cluster # 8449

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Schistosoma mansoni
cluster # 8449 cluster # 8449 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8449#0 length = 631 sequences # 2

consensus_8449#1 length = 597 sequences # 2
consensus_8449#2 length = 383 sequences # 2

consensusID : consensus_8449#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 631
fasta sequence

                              [GGCTATAACGATTAGCAGGTGAAGTAAAAATGGAGAAACAGATATTCAACTTGAAATTCGCTGCTAAACAAATGCAACGTTGTGCCATTCGTTGCAACAAAGATGAGGCGGAATCTAAAAATAAATTAAAGGCTGCTATCAAAAAGGGGGACCATGAAGGTGCAAGAATCCATGCAGAAAATGCTATTCGACAAAAGCACACCGCAACAAGCTATCTACGACTTGCTGCTCGAATCGATGCTGTTGTCTCCAGGGTTCAGACGGCCATGACTACTAAGGGTTTCACTAGGAGCATTATGACAGTTGTCAATTGTATGGAAAGCGCAGCCAGGTCCATGGATATGGAAAAGGTTAGCTGTCTCATGGATAAATTCGAAAGGGAATTTGACAACATGGATATACAGTCCAAGGTATGTTTATTTGTTTGTATTAGTTTCACTTAAATAGCTTGTAAGCTCCTCGTTAGCCAATACAATGTCCATTTCAACCCCTGAAAACGAAGTCCAAGGACTGATAAATCAGGTAGCTGACGAAACCGGAATAGAACTGAACTACGAACTCCCTGGTTCAACTCACACTTCCGTTTCAGTGGCCCCTATCTCAGCGGAGGAGGAAGATGGTCTCACGCAGC]

[+] EMBL CD184608             [GGCTATAACGATTAGCAGGTGAAGTAAAAATGGAGAAACAGATATTCAACTTGAAATTCGCTGCTAAACAAATGCAACGTTGTGCCATTCGTTGCAACAAAGATGAGGCGGAATCTAAAAATAAATTAAAGGCTGCTATCAAAAAGGGGGACCATGAAGGTGCAAGAATCCATGCAGAAAATGCTATTCGACAAAAGCACACCGCAACAAGCTATCTACGACTTGCTGCTCGAATCGATGCTGTTGTCTCCAGGGTTCAGACGGCCATGACTACTAAGGGTTTCACTAGGAGCATTATGACAGTTGTCAATTGTATGGAAAGCGCAGCCAGGTCCATGGATATGGAAAAGGTTAGCTGTCTCATGGATAAATTCGAAAGG                                                                                                                                                                                                                                                           ]
[+] EMBL CD069789             [                                                                                                                                                                         CCATGCAGAAAATGCTATTCGACAAAAGCACACCGCAACAAGCTATCTACGACTTGCTGCTCGAATCGATGCCGTTGTCTCCAGGGTTCAGACGGCCATGACTACTAAGGGTTTCACTAGGAGCATTATGACAGTTGTCAATTGTATGGAAAGCGCAGCCAGGTCCATGGATATGGAAAAGGTTAGCTGTCTCATGGATAAATTCGAAAGGGAATTTGACAACATGGATATACAGTCCAAGGTATGTTTATTTGTTTGTATTAGTTTCACTTAAATAGCTTGTAAGCTCCTCGTTAGCCAATACAATGTCCATTTCAACCCCTGAAAACGAAGTCCAAGGACTGATAAATCAGGTAGCTGACGAAACCGGAATAGAACTGAACTACGAACTCCCTGGTTCAACTCACACTTCCGTTTCAGTGGCCCCTATCTCAGCGGAGGAGGAAGATGGTCTCACGCAGC]




>consensus_8449#0
GGCTATAACGATTAGCAGGTGAAGTAAAAATGGAGAAACAGATATTCAACTTGAAATTCG
CTGCTAAACAAATGCAACGTTGTGCCATTCGTTGCAACAAAGATGAGGCGGAATCTAAAA
ATAAATTAAAGGCTGCTATCAAAAAGGGGGACCATGAAGGTGCAAGAATCCATGCAGAAA
ATGCTATTCGACAAAAGCACACCGCAACAAGCTATCTACGACTTGCTGCTCGAATCGATG
CTGTTGTCTCCAGGGTTCAGACGGCCATGACTACTAAGGGTTTCACTAGGAGCATTATGA
CAGTTGTCAATTGTATGGAAAGCGCAGCCAGGTCCATGGATATGGAAAAGGTTAGCTGTC
TCATGGATAAATTCGAAAGGGAATTTGACAACATGGATATACAGTCCAAGGTATGTTTAT
TTGTTTGTATTAGTTTCACTTAAATAGCTTGTAAGCTCCTCGTTAGCCAATACAATGTCC
ATTTCAACCCCTGAAAACGAAGTCCAAGGACTGATAAATCAGGTAGCTGACGAAACCGGA
ATAGAACTGAACTACGAACTCCCTGGTTCAACTCACACTTCCGTTTCAGTGGCCCCTATC
TCAGCGGAGGAGGAAGATGGTCTCACGCAGC

consensusID : consensus_8449#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 597
fasta sequence

                              [CGGCACGAGGGGGGGACCATGAAGGTGCAAGAATCCATGCAGAAAATGCTATTCGACAAAAGCACACCGCAACAAGCTATCTACGACTTGCTGCTCGAATCGATGCTGTTGTCTCCAGGGTTCAGACGGCCATGACTACTAAGGGTTTCACTAGGAGCATTATGACAGTTGTCAATTGTATGGAAAGCGCAGCCAGGTCCATGGATATGGAAAAGGTTAGCTGTCTCATGGATAAATTCGAAAGGGAATTTGACAACATGGATATACAGTCCAAGCTTGTAAGCTCCTCGTTAGCCAATACAATGTCCATTTCAACCCCTGAAAACGAAGTCCAAGGACTGATAAATCAGGTAGCTGACGAAACCGGAATAGAACTGAACTACGAACTCCCTGGTTCAACTCACACTTCCGTTTCAGTGGCCCCTATTTCAGCGGAGGAGGAAGATGGTCTCACGCAGCGCTTAGCTAGACTTAGACAATCATGAGATAGTTTTACGTTCAGCTGAATTTATTTCACTCCATTTGTTCCCTTTGATTTTAACTTGAGATAACCTAATTTTATGTTTTCAACCTGTTTTGTTGACTTTACTTGCAAGT]

[+] EMBL CD078879             [CGGCACGAGGGGGGGACCATGAAGGTGCAAGAATCCATGCAGAAAATGCTATTCGACAAAAGCACACCGCAACAAGCTATCTACGACTTGCTGCTCGAATCGATGCTGTTGTCTCCAGGGTTCAGACGGCCATGACTACTAAGGGTTTCACTAGGAGCATTATGACAGTTGTCAATTGTATGGAAAGCGCAGCCAGGTCCATGGATATGGAAAAGGTTAGCTGTCTCATGGATAAATTCGAAAGGGAATTTGACAACATGGATATACAGTCCAAGCTTGTAAGCTCCTCGTTAGCCAATACAATGTCCATTTCAACCCCTGAAAACGAAGTCCAAGGACTGATAAATCAGGTAGCTGACGAAACCGGAATAGAACTGAACTACGAACTCCCTGGTTCAACTCACACTTCCGTTTCAGTGGCCCCTATTTCAGCGGAGGAGGAAGATGGTCTCACGCAGCGCTTAGCTAGACTTAGACAATCATGAGATAGTTTTACGTTCAGCTGAATTTATTTCACTCCATTTGTTCCCTTTGATTTTAACTTGAGATAACCTAATTTTATGTTTTCAACCTGTTTTGTTGACTTTACTTGCAAGT]
[-] EMBL CD162659             [                                                                                                                                         ACTAAGGGTTTCACTAGGAGCATTATGACAGTTGTCAATTGTATGGAAAGCGCAGCCAGGTCCATGGATATGGAAAAGGTTAGCTGTCTCATGGATAAATTCGAAAGGGAATTTGACAACATGGATATACAGTCCAAGCTTGTAAGCTCCTCGTTAGCCAATACAATGTCCATTTCAACCCCTGAAAACGAAGTCCAAGGACTGATAAATCAGGTAGCTGACGAAACCGGAATAGAACTGAACTACGAACTCCCTGGTTCAACTCACACTTCCGTTTCAGTGGCCCCTATTTCAGCGGAGGAGGAAGATGGTCTCA                                                                                                                                                ]




>consensus_8449#1
CGGCACGAGGGGGGGACCATGAAGGTGCAAGAATCCATGCAGAAAATGCTATTCGACAAA
AGCACACCGCAACAAGCTATCTACGACTTGCTGCTCGAATCGATGCTGTTGTCTCCAGGG
TTCAGACGGCCATGACTACTAAGGGTTTCACTAGGAGCATTATGACAGTTGTCAATTGTA
TGGAAAGCGCAGCCAGGTCCATGGATATGGAAAAGGTTAGCTGTCTCATGGATAAATTCG
AAAGGGAATTTGACAACATGGATATACAGTCCAAGCTTGTAAGCTCCTCGTTAGCCAATA
CAATGTCCATTTCAACCCCTGAAAACGAAGTCCAAGGACTGATAAATCAGGTAGCTGACG
AAACCGGAATAGAACTGAACTACGAACTCCCTGGTTCAACTCACACTTCCGTTTCAGTGG
CCCCTATTTCAGCGGAGGAGGAAGATGGTCTCACGCAGCGCTTAGCTAGACTTAGACAAT
CATGAGATAGTTTTACGTTCAGCTGAATTTATTTCACTCCATTTGTTCCCTTTGATTTTA
ACTTGAGATAACCTAATTTTATGTTTTCAACCTGTTTTGTTGACTTTACTTGCAAGT

consensusID : consensus_8449#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 383
fasta sequence

                              [GCGGCCAAAAATTCGGCACGAGGGCGGAATCTAAAAATAAATTAAAGGCTGCTATCAAAAAGGGGGACCATGAAGGTGCAAGAATCCATGCAGAAAATGCTATTCGACAAAAGCACACCGCAACAAGCTATCTACGACTTGCTGCTCGAATCGATGCTGTTGTCTCCAGGGTTCAGACGGCCATGACTACTAAGGGTTTCACTAGGAGCATTATGACAGTTGTCAATTGTATGGAAAGCGCAGCCAGGTCCATGGATATGGAAAAGGTTAGCTGTCTCATGGATAAATTCGAAAGGGAATTTGACAACATGGATATACAGTCCAAGCTTGTAAGCTCCTCGTTAGCCAATACAATGTCCATTTCAACCCCTGAAAACGAAGTC]

[+] EMBL CD077732             [GCGGCCAAAAATTCGGCACGAGGGCGGAATCTAAAAATAAATTAAAGGCTGCTATCAAAAAGGGGGACCATGAAGGTGCAAGAATCCATGCAGAAAATGCTATTCGACAAAAGCACACCGCAACAAGCTATCTACGACTTGCTGCTCGAATCGATGCTGTTGTCTCCAGGGTTCAGACGGCCATGACTACTAAGGGTTTCACTAGGAGCATTATGACAGTTGTCAATTGTATGGAAAGCGCAGCCAGGTCCATGGATATGGAAAAGGTTAGCTGTCTCATGGATAAATTCGAAAGGGAATTTGACAACATGGATATACAGTCCAAGCTTGTAAGCTCCTCGTTAGCCAATACAATGTCCATTTCAACCCCTGAAAACGAAGTC]
[-] EMBL CD063004             [                                                                          GGTGCAAGAATCCATGCAGAAAATGCTATTCGACAAAAGCACACCGCAACAAGCTATCTACGACTTGCTGCTCGAATCGATGCTGTTGTCTCCAGGGTTCAGACGGCCATGACTACTAAGGGTTTCACTAGGAGCATTATGACAGTTGTCAATTGTATGGAAAGCGCAGCCAGGTCCATGGATATGGAAAAGGTTAGCTGTCTCATGGATAAATTCGAAAGGGAATTTGACAACATGGATATACAGTCCAAGCTTGTAAGCTCCTCGTTAGCCAATACAATGTCCATcaa                   ]




>consensus_8449#2
GCGGCCAAAAATTCGGCACGAGGGCGGAATCTAAAAATAAATTAAAGGCTGCTATCAAAA
AGGGGGACCATGAAGGTGCAAGAATCCATGCAGAAAATGCTATTCGACAAAAGCACACCG
CAACAAGCTATCTACGACTTGCTGCTCGAATCGATGCTGTTGTCTCCAGGGTTCAGACGG
CCATGACTACTAAGGGTTTCACTAGGAGCATTATGACAGTTGTCAATTGTATGGAAAGCG
CAGCCAGGTCCATGGATATGGAAAAGGTTAGCTGTCTCATGGATAAATTCGAAAGGGAAT
TTGACAACATGGATATACAGTCCAAGCTTGTAAGCTCCTCGTTAGCCAATACAATGTCCA
TTTCAACCCCTGAAAACGAAGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8449#0      GGCTATAACGATTAGCAGGTGAAGTAAAAATGGAGAAACAGATATTCAACTTGAAATTCG 60
consensus_8449#2      ------------------------------------------------------------
consensus_8449#1      ------------------------------------------------------------
                                                                                  

consensus_8449#0      CTGCTAAACAAATGCAACGTTGTGCCATTCGTTGCAACAAAGATGAGGCGGAATCTAAAA 120
consensus_8449#2      ----------------GCGGCCAAAAATTCGGCACGA--------GGGCGGAATCTAAAA 36
consensus_8449#1      ------------------------------------------------------------
                                                                                  

consensus_8449#0      ATAAATTAAAGGCTGCTATCAAAAAGGGGGACCATGAAGGTGCAAGAATCCATGCAGAAA 180
consensus_8449#2      ATAAATTAAAGGCTGCTATCAAAAAGGGGGACCATGAAGGTGCAAGAATCCATGCAGAAA 96
consensus_8449#1      ---------------CGGCACGAGGGGGGGACCATGAAGGTGCAAGAATCCATGCAGAAA 45
                                     *      *  ***********************************

consensus_8449#0      ATGCTATTCGACAAAAGCACACCGCAACAAGCTATCTACGACTTGCTGCTCGAATCGATG 240
consensus_8449#2      ATGCTATTCGACAAAAGCACACCGCAACAAGCTATCTACGACTTGCTGCTCGAATCGATG 156
consensus_8449#1      ATGCTATTCGACAAAAGCACACCGCAACAAGCTATCTACGACTTGCTGCTCGAATCGATG 105
                      ************************************************************

consensus_8449#0      CTGTTGTCTCCAGGGTTCAGACGGCCATGACTACTAAGGGTTTCACTAGGAGCATTATGA 300
consensus_8449#2      CTGTTGTCTCCAGGGTTCAGACGGCCATGACTACTAAGGGTTTCACTAGGAGCATTATGA 216
consensus_8449#1      CTGTTGTCTCCAGGGTTCAGACGGCCATGACTACTAAGGGTTTCACTAGGAGCATTATGA 165
                      ************************************************************

consensus_8449#0      CAGTTGTCAATTGTATGGAAAGCGCAGCCAGGTCCATGGATATGGAAAAGGTTAGCTGTC 360
consensus_8449#2      CAGTTGTCAATTGTATGGAAAGCGCAGCCAGGTCCATGGATATGGAAAAGGTTAGCTGTC 276
consensus_8449#1      CAGTTGTCAATTGTATGGAAAGCGCAGCCAGGTCCATGGATATGGAAAAGGTTAGCTGTC 225
                      ************************************************************

consensus_8449#0      TCATGGATAAATTCGAAAGGGAATTTGACAACATGGATATACAGTCCAAGGTATGTTTAT 420
consensus_8449#2      TCATGGATAAATTCGAAAGGGAATTTGACAACATGGATATACAGTCCAAG---------- 326
consensus_8449#1      TCATGGATAAATTCGAAAGGGAATTTGACAACATGGATATACAGTCCAAG---------- 275
                      **************************************************          

consensus_8449#0      TTGTTTGTATTAGTTTCACTTAAATAGCTTGTAAGCTCCTCGTTAGCCAATACAATGTCC 480
consensus_8449#2      ---------------------------CTTGTAAGCTCCTCGTTAGCCAATACAATGTCC 359
consensus_8449#1      ---------------------------CTTGTAAGCTCCTCGTTAGCCAATACAATGTCC 308
                                                 *********************************

consensus_8449#0      ATTTCAACCCCTGAAAACGAAGTCCAAGGACTGATAAATCAGGTAGCTGACGAAACCGGA 540
consensus_8449#2      ATTTCAACCCCTGAAAACGAAGTC------------------------------------ 383
consensus_8449#1      ATTTCAACCCCTGAAAACGAAGTCCAAGGACTGATAAATCAGGTAGCTGACGAAACCGGA 368
                      ************************                                    

consensus_8449#0      ATAGAACTGAACTACGAACTCCCTGGTTCAACTCACACTTCCGTTTCAGTGGCCCCTATC 600
consensus_8449#2      ------------------------------------------------------------
consensus_8449#1      ATAGAACTGAACTACGAACTCCCTGGTTCAACTCACACTTCCGTTTCAGTGGCCCCTATT 428
                                                                                  

consensus_8449#0      TCAGCGGAGGAGGAAGATGGTCTCACGCAGC----------------------------- 631
consensus_8449#2      ------------------------------------------------------------
consensus_8449#1      TCAGCGGAGGAGGAAGATGGTCTCACGCAGCGCTTAGCTAGACTTAGACAATCATGAGAT 488
                                                                                  

consensus_8449#0      ------------------------------------------------------------
consensus_8449#2      ------------------------------------------------------------
consensus_8449#1      AGTTTTACGTTCAGCTGAATTTATTTCACTCCATTTGTTCCCTTTGATTTTAACTTGAGA 548
                                                                                  

consensus_8449#0      -------------------------------------------------
consensus_8449#2      -------------------------------------------------
consensus_8449#1      TAACCTAATTTTATGTTTTCAACCTGTTTTGTTGACTTTACTTGCAAGT 597