cluster # 8456

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Schistosoma mansoni
cluster # 8456 cluster # 8456 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8456#0 length = 880 sequences # 4

consensus_8456#1 length = 277 sequences # 1
consensus_8456#2 length = 251 sequences # 1

consensusID : consensus_8456#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 880
fasta sequence

                              [CTCCGAGCCAAGATTCGGCACGAGGTGATTTGTTGCATGATAAATCGTATTGAACTGTGATCTTGTATCGACAAGTGAACACAAATACAACGTCGAGTGGAATAATTTCTATCATCTTAATCTTGATGATTTAGCCCTTTCAATCTAATATATGTTCTGTTCCATGGATTTATGTTGATCTCGATTTAAATCAAAAATCCTAAACAAGAACATATTCCAAGATGTGTGAAATAGAGTTATACAGAAAAACGAAAATAGATATTCCATTGCTGGCTGCTGGAATGATTTTGTGCATTTTAAGTTGTTTGATGATTTCTGTTGGAATAGCTAGAGTACGGGAAGATGTTTGGATAGCGGGAATTCTTGTAGCTATTGTGGGTTTACCGCTGTTCTTGTTTTCCTTAATAGTCTTTTGTGTCATCAGAACAAACAATTACACGGAAGTGTTACCAAAACAGTATGTGCTCGGTAAAATACCACCACCTACTTTTACAAGCATACCTTCAGCACTTGGATCTATTTATCATGCGTAAACTTTTTTTTCATGAAAATACTTCATAACTCATTTACACATCTTTTATTTTTCTCCTTTCATTGATATAATTAAATTTTGGTCTCATTTCATATCGTTATGTTTAGAACAGTTGAAATATTTCAATGAGTTACTACTTTTTATTACTTTTTGACGATTTTCAATGAGT-AACGATTGCTCTTAGNTATACCATTTCTTAATTTT-ATCCCAATACTTGGAAATATAT-AACT-AGTAGTTTTAAT-ATTTATGACT-AATATTTTAGTTNCTAAAAGT-CT-ATGGNTCTTNCAT-AT-ATTNTTG-ACACTTTNC-TATTTGTTGAATGGTTCGGGGGCTTGTAT-AATGATAAATCCA]

[+] EMBL CD082677             [CTCCGAGCCAAGATTCGGCACGAGGTGATTTGTTGCATGATAAATCGTATTGAACTGTGATCTTGTATCGACAAGTGAACACAAATACAACGTCGAGTGGAATAATTTCTATCATCTTAATCTTGATGATTTAGCCCTTTCAATCTAATATATGTTCTGTTCCATGGATTTATGTTGATCTCGATTTAAATCAAAAATCCTAAACAAGAACATATTCCAAGATGTGTGAAATAGAGTTATACAGAAAAACGAAAATAGATATTCCATTGCTGGCTGCTGGAATGATTTTGTGCATTTTAAGTTGTTTGATGATTTCTGTTGGAATAGCTAGAGTACGGGAAGATGTTTGGATAGCGGGAATTCTTGTAGCTATTGTGGGTTTACCGCTGTTCTTGTTTTCCTTAATAGTCTTTTGTGTCATCAGAACAAACAATTACACGGAAGTGTTACCAAAACAGTATGTGCTCGGTAAAATACCACCACCTACTTTTACAAGCATACCTTCAGCACTTGGATCTATTTATCATGCGTAAACTTTTTTTTCATGAAAATACTTCATAACTCATTTACACATCTTTTATTTTTCTCCTTTCATTGATATAATTAAATTTTGGTCTCATTTCATATCGTTATGTTTAGAACAGTTGAAATATTTCAATGAGTTACTACTTTTTATTACTTTNTGACGATTNTCAATGAGT AACGATTGCTCTTAGNTATACCATTTCTTAATTTT AATCCAATACTTGGAANTATAT AACT AGTAGNTNTAAT A TTATGACT AATAT                                                                                                  ]
[+] EMBL CD082268             [                                    tacgaggacCGTATTGAACTGTGATCTTGTATCGACAAGTTAACACAAATACAACGTCCAGTGGAATAATTTCTATCATCTTAATCTTGATGATTTAGCCCTTTCAATCTAATATATGTTCTGTTCCATGGATTTATGTTGATCTCGATTTAAATCAAAAATCCTAAACAAGAACATATTCCAAGATGTGTGAAATAGAGTTATACAGAAAAACGAAAATAGATATTCCATTGCTGGCTGCTGGAATGATTTTGTGCATTTTAAGTTGTTTGATGATTTCTGTTGGAATAGCTAGAGTACGGGAAGATGTTTGGATAGCGGGAATTCTTGTAGCTATTGTGGGTTTACCGCTGTTCTTGTTTTCCTTAATAGTCTTTTGTGTCATCAGAACAAACAATTACACGGAAGTGTTACCAAAACAGTATGTGCTCGGTAAAATACCACCACCTACTTTTACAAGCATACCTTCAGCACTTGGATCTATTTATCATGCGTAAACTTTTTTTTCATGAAAATACTTCATAACTCATTTACACATCTTTTATTTTTCTCCTTTCATTGATATAATTAAATNTTGGTCTCATTTCATATCGTTATGTTTAGAACAGTTGAAATATTTCAATGAGTTACTACTTTTTATTACTTTTTGACGATTTTCAATGAGTAAACGA TGCTCTTAGNTATACCATTTCTTAATTNT ATCCCAATACTTTGAAATATAT AACT AGTAGTTTTAAT ATTTATGACT AATATTTTAGTTNCTAAAAGT CT ATGGNTCTTNCAT AT ATTNTTG ACACTTTNC TATTTGTTGAATGGTTCGGGGGCTTGTAT AATGATAAATC  ]
[-] EMBL CD076271             [                                                                                                                                                                                                                                                ACAGAAAAACGAAAATAGATATTCCATTGCTGGCTGCTGGAATGATTTTGTGCATTTTAAGTTGTTTGATGATTTCTGTTGGAATAGCTAGAGTACGGGAAGATGTTTGGATAGCGGGAATTCTTGTAGCTATTGTGGGTTTACCGCTGTTCTTGTTTTCCTTAATAGTCTTTTGTGTCATCAGAACAAACAATTACACGGAAGTGTTACCAAAACAGTATGTGCTCGGTAAAATACCACCACCTACTTTTACAAGCATACCTTCAGCACTTGGATCTATTTATCATGCGTAAACTTTTTTTTCATGAAAATACTTCATAACTCATTTACACATCTTTTATTTTTCTCCTTTCATTGATATAATTAAATTTTGGTCTCATTTCATATCGTTATGTTTAGAACAGTTGAAATATTTCAATGAGTTACTACTTTTTATTACTTTTTGACGATTTTCAATGAGT AACGATTGCTCTTAGTTATACCATTTCTTAATTTTAATCCAATTACTTGGAAATATATAAACTAAGTAGTTTTAATAATTTATGACTAAATATT                                                                                                 ]
[-] EMBL CD075875             [                                                                                                                                                                                                                                                                                                                                                                                           TTTACCGCTGTTCTTGTTTTCCTTAATAGTCTTTTGTGTCATCAGAACAAACAATTACACGGAAGTGTTACCAAAACAGTATGTGCTCGGTAAAATACCACCACCTACTTTTACAAGCATACCTTCAGCACTTGGATCTATTTATCATGCGTAAACTTTTTTTTCATGAAAATACTTCATAACTCATTTACACATCTTTTATTTTTCTCCTTTCATTGATATAATTAAATTTTGGTCTCATTTCAAATCGTTATGTTTAGAACAGTTGAAATATTTCAATGAGTTACTACTTTTTATTACTTTTTGACGATTTTCAATGAGT AACGATTGCTCTTAGTTATACCATTTCTTAATTTTAATCCAATTACTTGGAAATATATAAACTAAGTAGTTTTAATAATTTATGACTAAATATTTTAGTTTTTAAAAGTCCTAATGGTTCTTTCATAATAATTTTTGAACACTTTTCGTATTGTTTGTATGGTTCGTGGGCTTGTATAAATGATAAATTCA]




>consensus_8456#0
CTCCGAGCCAAGATTCGGCACGAGGTGATTTGTTGCATGATAAATCGTATTGAACTGTGA
TCTTGTATCGACAAGTGAACACAAATACAACGTCGAGTGGAATAATTTCTATCATCTTAA
TCTTGATGATTTAGCCCTTTCAATCTAATATATGTTCTGTTCCATGGATTTATGTTGATC
TCGATTTAAATCAAAAATCCTAAACAAGAACATATTCCAAGATGTGTGAAATAGAGTTAT
ACAGAAAAACGAAAATAGATATTCCATTGCTGGCTGCTGGAATGATTTTGTGCATTTTAA
GTTGTTTGATGATTTCTGTTGGAATAGCTAGAGTACGGGAAGATGTTTGGATAGCGGGAA
TTCTTGTAGCTATTGTGGGTTTACCGCTGTTCTTGTTTTCCTTAATAGTCTTTTGTGTCA
TCAGAACAAACAATTACACGGAAGTGTTACCAAAACAGTATGTGCTCGGTAAAATACCAC
CACCTACTTTTACAAGCATACCTTCAGCACTTGGATCTATTTATCATGCGTAAACTTTTT
TTTCATGAAAATACTTCATAACTCATTTACACATCTTTTATTTTTCTCCTTTCATTGATA
TAATTAAATTTTGGTCTCATTTCATATCGTTATGTTTAGAACAGTTGAAATATTTCAATG
AGTTACTACTTTTTATTACTTTTTGACGATTTTCAATGAGTAACGATTGCTCTTAGNTAT
ACCATTTCTTAATTTTATCCCAATACTTGGAAATATATAACTAGTAGTTTTAATATTTAT
GACTAATATTTTAGTTNCTAAAAGTCTATGGNTCTTNCATATATTNTTGACACTTTNCTA
TTTGTTGAATGGTTCGGGGGCTTGTATAATGATAAATCCA

consensusID : consensus_8456#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 277
fasta sequence

                              [GAGGGCTGCACCCTGAATGGTGAAGTGTTTTGTGTAACCCATAGATTTTTAACCACTTCTGACATAAATCGTATTGAACTGTGATCTTGTATCGACAAGTGAACACAAATACAACGTCGAGTGGAATAATTTCTATCATCTTAATCTTGATGATTTAGCCCTTTCAATCTAATATATGTTCTGTTCCATGGATTTATGTTGATCTCGATTTANATCAAAAATCCTAAACAAGAACATATTCCAAGATGTGTGANATAGAGTTATACAGAAAAAACGA]

[+] EMBL CD077592             [GAGGGCTGCACCCTGAATGGTGAAGTGTTTTGTGTAACCCATAGATTTTTAACCACTTCTGACATAAATCGTATTGAACTGTGATCTTGTATCGACAAGTGAACACAAATACAACGTCGAGTGGAATAATTTCTATCATCTTAATCTTGATGATTTAGCCCTTTCAATCTAATATATGTTCTGTTCCATGGATTTATGTTGATCTCGATTTANATCAAAAATCCTAAACAAGAACATATTCCAAGATGTGTGANATAGAGTTATACAGAAAAAACGA]




>consensus_8456#1
GAGGGCTGCACCCTGAATGGTGAAGTGTTTTGTGTAACCCATAGATTTTTAACCACTTCT
GACATAAATCGTATTGAACTGTGATCTTGTATCGACAAGTGAACACAAATACAACGTCGA
GTGGAATAATTTCTATCATCTTAATCTTGATGATTTAGCCCTTTCAATCTAATATATGTT
CTGTTCCATGGATTTATGTTGATCTCGATTTANATCAAAAATCCTAAACAAGAACATATT
CCAAGATGTGTGANATAGAGTTATACAGAAAAAACGA

consensusID : consensus_8456#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 251
fasta sequence

                              [CCGAATAGCTCCGAATAGCTAGAGTACGGGAAGATGTTTGGATAGCGGGAATTCTTGTAGCTATTGTGGGTTTACCGCTGTTCTTGTTTTCCTTAATAGTCTTTTGTGTCATCAGAACAAACAATTACACGGAAGTGTTACCAAAACAGTATGTGCTCGGTAAAATACCACCACCTACTTTTACAAGCATACCTTCAGCACTTGGATCTATTTATCATGCGTAAACTTTTTTTTTCATGAAAATACTTCAT]

[-] EMBL CD063030             [CCGAATAGCTCCGAATAGCTAGAGTACGGGAAGATGTTTGGATAGCGGGAATTCTTGTAGCTATTGTGGGTTTACCGCTGTTCTTGTTTTCCTTAATAGTCTTTTGTGTCATCAGAACAAACAATTACACGGAAGTGTTACCAAAACAGTATGTGCTCGGTAAAATACCACCACCTACTTTTACAAGCATACCTTCAGCACTTGGATCTATTTATCATGCGTAAACTTTTTTTTTCATGAAAATACTTCAT]




>consensus_8456#2
CCGAATAGCTCCGAATAGCTAGAGTACGGGAAGATGTTTGGATAGCGGGAATTCTTGTAG
CTATTGTGGGTTTACCGCTGTTCTTGTTTTCCTTAATAGTCTTTTGTGTCATCAGAACAA
ACAATTACACGGAAGTGTTACCAAAACAGTATGTGCTCGGTAAAATACCACCACCTACTT
TTACAAGCATACCTTCAGCACTTGGATCTATTTATCATGCGTAAACTTTTTTTTTCATGA
AAATACTTCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8456#0      CTCCGAGCCAAGATTCGGCACGAGGTGATTTGTTGCATGATAAATCGTATTGAACTGTGA 60
consensus_8456#2      ------------------------------------------------------------
consensus_8456#1      ------------------------------------------------------------
                                                                                  

consensus_8456#0      TCTTGTATCGACAAGTGAACACAAATACAACGTCGAGTGGAATAATTTCTATCATCTTAA 120
consensus_8456#2      ------------------------------------------------------------
consensus_8456#1      ------------------------------------------------------------
                                                                                  

consensus_8456#0      TCTTGATGATTTAGCCCTTTCAATCTAATATATGTTCTGTTCCATGGATTTATGTTGATC 180
consensus_8456#2      ------------------------------------------------------------
consensus_8456#1      ------------------------------------------------------------
                                                                                  

consensus_8456#0      TCGATTTAAATCAAAAATCCTAAACAAGAACATATTCCAAGATGTGTGAAATAGAGTTAT 240
consensus_8456#2      ------------------------------------------------------------
consensus_8456#1      ------------------------------------------------------------
                                                                                  

consensus_8456#0      ACAGAAAAACGAAAATAGATATTCCATTGCTGGCTGCTGGAATGATTTTGTGCATTTTAA 300
consensus_8456#2      ------------------------------------------------------------
consensus_8456#1      ------------------------------------------------------------
                                                                                  

consensus_8456#0      GTTGTTTGATGATTTCTGTTGGAATAGCTAGA-GTACGGGAAGATGTTTGGATAGCGGGA 359
consensus_8456#2      ----CCGAATAGCTCC-----GAATAGCTAGA-GTACGGGAAGATGTTTGGATAGCGGGA 50
consensus_8456#1      -------GAGGGCTGCACCCTGAATGGTGAAGTGTTTTGTGTAACCCATAGATTTTTAAC 53
                              *    * *     **** *  *   **   *    *    * ***       

consensus_8456#0      ATTCTTGTAGCTATTGTGGGTTTACCGCTGTTCTTGTTTTCCTTAATAGTCTTTTGTGT- 418
consensus_8456#2      ATTCTTGTAGCTATTGTGGGTTTACCGCTGTTCTTGTTTTCCTTAATAGTCTTTTGTGT- 109
consensus_8456#1      CACTTCTGACATAAATCGTATTGAACTGTGATCTTGTATCGACAAGTGAACACAAATACA 113
                          *   *  **    *  ** * *  ** ****** *     * *   *     *   

consensus_8456#0      -CATCAGAACAAACAATTACACGGAAGTGTTACCAAAACAGTATGTGCTCGGTAAAATAC 477
consensus_8456#2      -CATCAGAACAAACAATTACACGGAAGTGTTACCAAAACAGTATGTGCTCGGTAAAATAC 168
consensus_8456#1      ACGTCGAGTGGAATAATTTC-TATCATCTTAATCTTGATGATTTAGCCCTTTCAATCTAA 172
                       * **      ** **** *     *   * * *   *   * *   *     **  ** 

consensus_8456#0      CACCACCTACTTTTACAAGCATACCTTCAGCACTTGGATCTATTTATCATGCGTAAACTT 537
consensus_8456#2      CACCACCTACTTTTACAAGCATACCTTCAGCACTTGGATCTATTTATCATGCGTAAACTT 228
consensus_8456#1      TAT-ATGTTCTGTTCCATGGATTTATGTTGATCTCGATTTANATCAAAAATCCTAAACAA 231
                       *  *  * ** ** ** * **   *   *  ** *  *    * *  *  * *****  

consensus_8456#0      TTTTTT-CATGAAAATACTTCATAACTCATTTACACATCTTTTATTTTTCTCCTTTCATT 596
consensus_8456#2      TTTTTTTCATGAAAATACTTCAT------------------------------------- 251
consensus_8456#1      GAACATATTCCAAGATGTGTGANATAGAGTTATACAGAAAAAACGA-------------- 277
                           *     ** **   * *                                      

consensus_8456#0      GATATAATTAAATTTTGGTCTCATTTCATATCGTTATGTTTAGAACAGTTGAAATATTTC 656
consensus_8456#2      ------------------------------------------------------------
consensus_8456#1      ------------------------------------------------------------
                                                                                  

consensus_8456#0      AATGAGTTACTACTTTTTATTACTTTTTGACGATTTTCAATGAGTAACGATTGCTCTTAG 716
consensus_8456#2      ------------------------------------------------------------
consensus_8456#1      ------------------------------------------------------------
                                                                                  

consensus_8456#0      NTATACCATTTCTTAATTTTATCCCAATACTTGGAAATATATAACTAGTAGTTTTAATAT 776
consensus_8456#2      ------------------------------------------------------------
consensus_8456#1      ------------------------------------------------------------
                                                                                  

consensus_8456#0      TTATGACTAATATTTTAGTTNCTAAAAGTCTATGGNTCTTNCATATATTNTTGACACTTT 836
consensus_8456#2      ------------------------------------------------------------
consensus_8456#1      ------------------------------------------------------------
                                                                                  

consensus_8456#0      NCTATTTGTTGAATGGTTCGGGGGCTTGTATAATGATAAATCCA 880
consensus_8456#2      --------------------------------------------
consensus_8456#1      --------------------------------------------