cluster # 8457

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Schistosoma mansoni
cluster # 8457 cluster # 8457 Sequences # 6 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8457#0 length = 806 sequences # 2
consensus_8457#1 length = 587 sequences # 2

consensus_8457#2 length = 400 sequences # 1
consensus_8457#3 length = 388 sequences # 1

consensusID : consensus_8457#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 806
fasta sequence

                              [GGAAATAACATTTATACAAGATCAAGCTACAAGGTGACTGTGATTGTGAAAGACTGTAATTAATAAACTGGACATGTATTTTTGTTACATGGAAGATATTATTATTATTATATTATTGTTATTATTATTATTGTGTTATCCTTATAATTTCCCCTTCCAGCCATATAGAATGGTGAAGTCTAGTAAGCCCTTCTAGAGAAGAGTGCTACATCGAAGAACAGCACAACTACCGGGACAGGATAGCTGTTTCTGCACTGCTTACGCAGAACCATTACATAACACTCACAACCCATATTTTTTTGTTTGGTCAGACTCATATTTTAACACTCTTTTGAACCCTCAGTAATTATGCAATGACTCTATGTAGCATTCGTAATCGTTCTCGGGTATTGGTATAGTGGTTGCCTAGGCCGATCTTCAACACCCAGGTTACCGCTCACGTTGGTTCATTAAAACAGTCCCATGATCCAGTAGGCACGACGAGGACGTGTAAGTCGGATTTTGCCTCCTATCCTCATAATATTTGATTGATTACCAGACANAATAAATTATATAATTGTAATTAATAATANAAATGAT-AGTAATTCCCATATCTAATTTAATGTTTATTATCATTATAATNNTATG-TTAATTATAATTAAACTTATTCACAGGGTTGATTAGTCATTGGTTTATTTTTATTTTTATTTAATGGAAAAAATTTTTGGAATTTTCTTTTTTGTGATTTTAAATGTACGCGCGCGTGCGTGCGTGCGTGCGTATGTGTGTGTGTGTGTTGGTGTAAGGATGTTATTAAACTCCAATTT]

[+] EMBL CD078846             [GGAAATAACATTTATACAAGATCAAGCTACAAGGTGACTGTGATTGTGAAAGACTGTAATTAATAAACTGGACATGTATTTTTGTTACATGGAAGATATTATTATTATTATATTATTGTTATTATTATTATTGTGTTATCCTTATAATTTCCCCTTCCAGCCATATAGAATGGTGAAGTCTAGTAAGCCCTTCTAGAGAAGAGTGCTACATCGAAGAACAGCACAACTACCGGGACAGGATAGCTGTTTCTGCACTGCTTACGCAGAACCATTACATAACACTCACAACCCATATTTTTTTGTTTGGTCAGACTCATATTTTAACACTCTTTTGAACCCTCAGTAATTATGCAATGACTCTATGTAGCATTCGTAATCGTTCTCGGGTATTGGTATAGTGGTTGCCTAGGCCGATCTTCAACACCCAGGTTACCGCTCACGTTGGTTCATTAAAACAGTCCCATGATCCAGTAGGCACGACGAGGACGTGTAAGTCGGATTTTGCCTCCTATCCTCATAATATTTGATTGATTACCAGACANAATAAATTATATAATTGTAATTAATAATANAAATGAT AGTAATTCCCATATCTAATTTAATGTTTATTATCATTATAATNNTATG TTAATTATAATTAAACTT                                                                                                                                                                 ]
[-] EMBL CD073307             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CATAATATTTGATTGATTCCCAGCCAAAATAAATTATATAATTGTAATTAATAATA AAATGATAAGTAATTCCCATATTTAATTTAATGTTTATTATCATTATAAT TTATGTTTAATTATAATTAAACTTATTCACAGGGTTGATTAGTCATTGGTTTATTTTTATTTTTATTTAATGGAAAAAATTTTTGGAATTTTCTTTTTTGTGATTTTAAATGTACGCGCGCGTGCGTGCGTGCGTGCGTATGTGTGTGTGTGTGTTGGTGTAAGGATGTTATTAAACTCCAATTT]




>consensus_8457#0
GGAAATAACATTTATACAAGATCAAGCTACAAGGTGACTGTGATTGTGAAAGACTGTAAT
TAATAAACTGGACATGTATTTTTGTTACATGGAAGATATTATTATTATTATATTATTGTT
ATTATTATTATTGTGTTATCCTTATAATTTCCCCTTCCAGCCATATAGAATGGTGAAGTC
TAGTAAGCCCTTCTAGAGAAGAGTGCTACATCGAAGAACAGCACAACTACCGGGACAGGA
TAGCTGTTTCTGCACTGCTTACGCAGAACCATTACATAACACTCACAACCCATATTTTTT
TGTTTGGTCAGACTCATATTTTAACACTCTTTTGAACCCTCAGTAATTATGCAATGACTC
TATGTAGCATTCGTAATCGTTCTCGGGTATTGGTATAGTGGTTGCCTAGGCCGATCTTCA
ACACCCAGGTTACCGCTCACGTTGGTTCATTAAAACAGTCCCATGATCCAGTAGGCACGA
CGAGGACGTGTAAGTCGGATTTTGCCTCCTATCCTCATAATATTTGATTGATTACCAGAC
ANAATAAATTATATAATTGTAATTAATAATANAAATGATAGTAATTCCCATATCTAATTT
AATGTTTATTATCATTATAATNNTATGTTAATTATAATTAAACTTATTCACAGGGTTGAT
TAGTCATTGGTTTATTTTTATTTTTATTTAATGGAAAAAATTTTTGGAATTTTCTTTTTT
GTGATTTTAAATGTACGCGCGCGTGCGTGCGTGCGTGCGTATGTGTGTGTGTGTGTTGGT
GTAAGGATGTTATTAAACTCCAATTT

consensusID : consensus_8457#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 587
fasta sequence

                              [ACAACGTGTTTCTTTGTTCAATTTTAATCACAAATTTTAACTAAACTAAAAAATAATCTTAAATTCCAAGAATATTTTGTTTAACTCCATGTACATTGGTACATTTAAAAAAAAAAGAAAAAAATTGACAACATAACAATCTACTCATTTTTTATTATTGTATCTTAGAGATATTTTTATTGTGCCCCTTCCAGCCATAAGAATGGTGAAGCCTAGTAGACCCTTCTGGAGAAGAGTGCTACATCAAAGCACGGCACAACTACCGGTGCGGGATAGCTGTTTCTGCACTACTTACGCAGAACCATTACATAACACTCACATTCGATTTTTTTTCATCGGGCAAACTCATTTTTTACCACTCTTTTGAACCATCAATATTTATGCAATAACTCTTTGTAGCATTCGTAATCGTTTGTGGGTATTAGTAGAGTGGTTAATTAGGCCGATCTCAACCACTCACATCACCGCTCACGTTAGTACATGGGATAAATGCCATTATCCAGGAGGCACGACGAGGACATGTGAGTCGGATTTTGCCTCTCAAAGAAAAATATAACAAAGAGAAAACCAATAAGTTAATTCAACAA]

[-] EMBL CD154169             [ACAACGTGTTTCTTTGTTCAATTTTAATCACAAATTTTAACTAAACTAAAAAATAATCTTAAATTCCAAGAATATTTTGTTTAACTCCATGTACATTGGTACATTTAAAAAAAAAAGAAAAAAATTGACAACATAACAATCTACTCATTTTTTATTATTGTATCTTAGAGATATTTTTATTGTGCCCCTTCCAGCCATAAGAATGGTGAAGCCTAGTAGACCCTTCTGGAGAAGAGTGCTACATCAAAGCACGGCACAACTACCGGTGCGGGATAGCTGTTTCTGCACTACTTACGCAGAACCATTACATAACACTCACATTCGATTTTTTTTCATCGGGCAAACTCATTTTTTACCACTCTTTTGAACCATCAATATTTATGCAATAACTCTTTGTAGCATTCGTAATCGTTTGTGGGTATTAGTAGAGTGGTTAATTAGGCCGATCTCAACCACTCACATCACCGCTCACGTTAGTACATGGGATAAATGCCATTATCCAGGAGGCACGACGAGGACATGTGAGTCGGATTTTGCCTCTCAAAGAAAAATATAACAAAGAGAAAACCAATAAGTTAATTCAACAA]
[-] EMBL CD154209             [                       nTAATCACAAATTTTAACTAAACTAAAAAATAATCTTAAATTCCAAGAATATTTTGTTTAACTCCATGTACATTGGTACATTTAAAAAAAAAAGAAAAAAATTGACAACATAACAATCTACTCATTTTTTATTATTGTATCTTAGAGATATTTTTATTGTGCCCCTTCCAGCCATAAGAATGGTGAAGCCTAGTAGACCCTTCTGGAGAAGAGTGCTACATCAAAGCACGGCACAACTACCGGTGCGGGATAGCTGTTTCTGCACTACTTACGCAGAACCATTACATAACACTCACATTCGATTTTTTTTCATCGGGCAAACTCATTTTTTACCACTCTTTTGAACCATCAATATTTATGCAATAACTCTTTGTAGCATTCGTAATCGTTTGTGGGTATTAGTAGAGTGGTTAATTAGGCCGATCTCAACCACTCACATCACCGCTCACGTTAGTACATGGGATAAATGCCATTATCCAGGAGGCACGACGAGGACATGTGAGTCGGATTTTGCCTCTCAAAGAAAAATATAACAAAGAGAAAACCAATAAGTTAATTCAACAA]




>consensus_8457#1
ACAACGTGTTTCTTTGTTCAATTTTAATCACAAATTTTAACTAAACTAAAAAATAATCTT
AAATTCCAAGAATATTTTGTTTAACTCCATGTACATTGGTACATTTAAAAAAAAAAGAAA
AAAATTGACAACATAACAATCTACTCATTTTTTATTATTGTATCTTAGAGATATTTTTAT
TGTGCCCCTTCCAGCCATAAGAATGGTGAAGCCTAGTAGACCCTTCTGGAGAAGAGTGCT
ACATCAAAGCACGGCACAACTACCGGTGCGGGATAGCTGTTTCTGCACTACTTACGCAGA
ACCATTACATAACACTCACATTCGATTTTTTTTCATCGGGCAAACTCATTTTTTACCACT
CTTTTGAACCATCAATATTTATGCAATAACTCTTTGTAGCATTCGTAATCGTTTGTGGGT
ATTAGTAGAGTGGTTAATTAGGCCGATCTCAACCACTCACATCACCGCTCACGTTAGTAC
ATGGGATAAATGCCATTATCCAGGAGGCACGACGAGGACATGTGAGTCGGATTTTGCCTC
TCAAAGAAAAATATAACAAAGAGAAAACCAATAAGTTAATTCAACAA

consensusID : consensus_8457#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 400
fasta sequence

                              [GTGCGAGGTTTGTTTTTGAAACTAAGACAAAATTAATGAATTCGAAAAATTCATCAAAATTCTATCATAAATTAACATTTTAAATAATTTAGTCTGTATAAAATTAGATTAATAATATACGTTCATTATTATTTAATTACATTTTTTAGGCAAGAACATTAAAGTTACAAACTGATACTGAACAAAATGTGCCCCCCGTAGTAACATGGTGAAGCCTAGTAGGCCCTTCTGGAGAAGAATGCTACATCAAAGCACGGCACAACTACTGGGGCTCAACCGGTGTTTTTGCATTGCTTATGCAGAATTATTACATCTTTCTTTCTGTACTTATTTAGGGCAGACTCATTTATTCTTTCTTATTGAACCAATAATAATTACGCAACGATTCTTTATAGCCTTC]

[+] EMBL CD084327             [GTGCGAGGTTTGTTTTTGAAACTAAGACAAAATTAATGAATTCGAAAAATTCATCAAAATTCTATCATAAATTAACATTTTAAATAATTTAGTCTGTATAAAATTAGATTAATAATATACGTTCATTATTATTTAATTACATTTTTTAGGCAAGAACATTAAAGTTACAAACTGATACTGAACAAAATGTGCCCCCCGTAGTAACATGGTGAAGCCTAGTAGGCCCTTCTGGAGAAGAATGCTACATCAAAGCACGGCACAACTACTGGGGCTCAACCGGTGTTTTTGCATTGCTTATGCAGAATTATTACATCTTTCTTTCTGTACTTATTTAGGGCAGACTCATTTATTCTTTCTTATTGAACCAATAATAATTACGCAACGATTCTTTATAGCCTTC]




>consensus_8457#2
GTGCGAGGTTTGTTTTTGAAACTAAGACAAAATTAATGAATTCGAAAAATTCATCAAAAT
TCTATCATAAATTAACATTTTAAATAATTTAGTCTGTATAAAATTAGATTAATAATATAC
GTTCATTATTATTTAATTACATTTTTTAGGCAAGAACATTAAAGTTACAAACTGATACTG
AACAAAATGTGCCCCCCGTAGTAACATGGTGAAGCCTAGTAGGCCCTTCTGGAGAAGAAT
GCTACATCAAAGCACGGCACAACTACTGGGGCTCAACCGGTGTTTTTGCATTGCTTATGC
AGAATTATTACATCTTTCTTTCTGTACTTATTTAGGGCAGACTCATTTATTCTTTCTTAT
TGAACCAATAATAATTACGCAACGATTCTTTATAGCCTTC

consensusID : consensus_8457#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 388
fasta sequence

                              [NNNNNNNNNANNAGCCGAATAGCTCCGAATAGCTGTTTTTGCACTTCTTACGCAGAACCATTACATAACACTCACATTCGCTGTTTTTCAGTTTTTGGGCGGACTCATTTTTACCACTCTTTTGAACCCTCACTAGTTTTCCAATGACTCTTTGAAGCATTCATAATTGTTTTCTGGTATTGGTAGAGTGGGTGATTAGGCTAATCTCCCCTACCTACATTACCGCTCACGTTAGTACATGGGATGTTCGCCATTATCCAGGAGGCACGACGAGGACGTGTGAGTTGGATTTGGCCTCTCAATTCAGTCTATTAAATTTATCTACACCTTTGCTATACTATACTAATGTGTCTTCAACGTGAATCTCGACTACCCTTAATCAAGTAGG]

[-] EMBL CD063034             [NNNNNNNNNANNAGCCGAATAGCTCCGAATAGCTGTTTTTGCACTTCTTACGCAGAACCATTACATAACACTCACATTCGCTGTTTTTCAGTTTTTGGGCGGACTCATTTTTACCACTCTTTTGAACCCTCACTAGTTTTCCAATGACTCTTTGAAGCATTCATAATTGTTTTCTGGTATTGGTAGAGTGGGTGATTAGGCTAATCTCCCCTACCTACATTACCGCTCACGTTAGTACATGGGATGTTCGCCATTATCCAGGAGGCACGACGAGGACGTGTGAGTTGGATTTGGCCTCTCAATTCAGTCTATTAAATTTATCTACACCTTTGCTATACTATACTAATGTGTCTTCAACGTGAATCTCGACTACCCTTAATCAAGTAGG]




>consensus_8457#3
NNNNNNNNNANNAGCCGAATAGCTCCGAATAGCTGTTTTTGCACTTCTTACGCAGAACCA
TTACATAACACTCACATTCGCTGTTTTTCAGTTTTTGGGCGGACTCATTTTTACCACTCT
TTTGAACCCTCACTAGTTTTCCAATGACTCTTTGAAGCATTCATAATTGTTTTCTGGTAT
TGGTAGAGTGGGTGATTAGGCTAATCTCCCCTACCTACATTACCGCTCACGTTAGTACAT
GGGATGTTCGCCATTATCCAGGAGGCACGACGAGGACGTGTGAGTTGGATTTGGCCTCTC
AATTCAGTCTATTAAATTTATCTACACCTTTGCTATACTATACTAATGTGTCTTCAACGT
GAATCTCGACTACCCTTAATCAAGTAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8457#1      ACAACGTGTTTCTTTGTTCAATTTTAATCACAAATTTTAACTAAACTAAAAAATAATCTT 60
consensus_8457#3      ------------------------------------------------------------
consensus_8457#0      -------------------------------------GGAAATAACATTTATACAAGATC 23
consensus_8457#2      -----GTGCGAGGTTTGTTTTTGAAACTAAGACAAAATTAATGAATTCGAAAAATTCATC 55
                                                                                  

consensus_8457#1      AAATTCCAAGAATATTTTGTTTAACTCCATGTACATTGGTACATTTAAAAAAAAAAGAAA 120
consensus_8457#3      ------------------------------------------------------------
consensus_8457#0      AAGCTACAAGGTGACTGTGATTGTGAAAGACTGTAATTAATAAACTGGACATGTATTTTT 83
consensus_8457#2      AAAATTCTATCATAAATTAAC--ATTTTAAATAATTTAGTCTGTATAAAATTAGATTAAT 113
                                                                                  

consensus_8457#1      A--AAATTGACAACATAACA-ATCTACTCATTTTTTATTATTGTATCTTAGAGATATTTT 177
consensus_8457#3      ------------------------------------------------------------
consensus_8457#0      GTTACATGGAAGATATTATT-ATTATTATATTATTGTTATTATTATTATTGTGTTATCCT 142
consensus_8457#2      AATATACGTTCATTATTATTTAATTACATTTTTTAGGCAAGAACATTAAAGTTACAAACT 173
                                                                                  

consensus_8457#1      TATTGTG-CC----CCTTCCAGCCATA--AGAATGGTGAAGCCTAGTAGACCCTTCTGGA 230
consensus_8457#3      ------------------------------------------------------------
consensus_8457#0      TATAATTTCC----CCTTCCAGCCATAT-AGAATGGTGAAGTCTAGTAAGCCCTTCTAGA 197
consensus_8457#2      GATACTGAACAAAATGTGCCCCCCGTAGTAACATGGTGAAGCCTAGTAGGCCCTTCTGGA 233
                                                                                  

consensus_8457#1      GAAGAGTGCTACATCAAAGCACGGCACAACTACCGGTGCGGGATAGCTGTTTCTGCACTA 290
consensus_8457#3      --------------NNNNNNNNNANNAGCCGAATAGCTCCGAATAGCTGTTTTTGCACTT 46
consensus_8457#0      GAAGAGTGCTACATCGAAGAACAGCACAACTACCGGGACAGGATAGCTGTTTCTGCACTG 257
consensus_8457#2      GAAGAATGCTACATCAAAGCACGGCACAACTACTGGGGCTCAACCGGTGTTTTTGCATTG 293
                                                   * *   *  *   *  * ***** **** * 

consensus_8457#1      CTTACGCAGAACCATTACATAACACTCACATTCGATTTTTTT---TCATCGGGCAAACTC 347
consensus_8457#3      CTTACGCAGAACCATTACATAACACTCACATTCGCTGTTTTTCAGTTTTTGGGCGGACTC 106
consensus_8457#0      CTTACGCAGAACCATTACATAACACTCACAACCCATATTTTTT--TGTTTGGTCAGACTC 315
consensus_8457#2      CTTATGCAGAATTATTACAT----CTTTCTTTCTGTACTTAT-----TTAGGGCAGACTC 344
                      **** ******  *******    **  *   *  *  ** *      * ** *  ****

consensus_8457#1      ATTTTTTACCACTCTTTTGAACCATCAATATTTATGCAATAACTCTTTGTAGCATTCGTA 407
consensus_8457#3      ATTTTT-ACCACTCTTTTGAACCCTCACTAGTTTTCCAATGACTCTTTGAAGCATTCATA 165
consensus_8457#0      ATATTTTAACACTCTTTTGAACCCTCAGTAATTATGCAATGACTCTATGTAGCATTCGTA 375
consensus_8457#2      ATTTATTCTTTCT-TATTGAACCAATAATAATTACGCAACGATTCTTTATAGCCTTC--- 400
                      ** * *     ** * *******   * ** **   ***  * *** *  *** ***   

consensus_8457#1      ATCGTTTGTGGGTATTAGTAGAGTGGTTAATTAGGCCGATCTCAACCACTCACATCACCG 467
consensus_8457#3      ATTGTTTTCTGGTATTGGTAGAGTGGGTGATTAGGCTAATCTCCCCTACCTACATTACCG 225
consensus_8457#0      ATCGTTCTCGGGTATTGGTATAGTGGTTGCCTAGGCCGATCTTCAACACCCAGGTTACCG 435
consensus_8457#2      ------------------------------------------------------------
                                                                                  

consensus_8457#1      CTCACGTTAGTACATGGGATAAATGCCATTATCCAGGAGGCACGACGAGGACATGTGAGT 527
consensus_8457#3      CTCACGTTAGTACATGGGATGTTCGCCATTATCCAGGAGGCACGACGAGGACGTGTGAGT 285
consensus_8457#0      CTCACGTTGGTTCATTAAAACAGTCCCATGATCCAGTAGGCACGACGAGGACGTGTAAGT 495
consensus_8457#2      ------------------------------------------------------------
                                                                                  

consensus_8457#1      CGGATTTTGCCTCTCAAA-GAAAAATATAACAAAGAGAAA-ACCAATAAGTTAATTCAAC 585
consensus_8457#3      TGGATTTGGCCTCTCAAT-TCAGTCTATTAAATTTATCTACACCTTTGCTATACTATACT 344
consensus_8457#0      CGGATTTTGCCTCCTATCCTCATAATATTTGATTGATTACCAGACANAATAAATTATATA 555
consensus_8457#2      ------------------------------------------------------------
                                                                                  

consensus_8457#1      AA---------------------------------------------------------- 587
consensus_8457#3      AATGTGTCTT-CAACGTGAATCTCGACTACCCTTA-ATCAAGTAGG-------------- 388
consensus_8457#0      ATTGTAATTAATAATANAAATGATAGTAATTCCCATATCTAATTTAATGTTTATTATCAT 615
consensus_8457#2      ------------------------------------------------------------
                                                                                  

consensus_8457#1      ------------------------------------------------------------
consensus_8457#3      ------------------------------------------------------------
consensus_8457#0      TATAATNNTATGTTAATTATAATTAAACTTATTCACAGGGTTGATTAGTCATTGGTTTAT 675
consensus_8457#2      ------------------------------------------------------------
                                                                                  

consensus_8457#1      ------------------------------------------------------------
consensus_8457#3      ------------------------------------------------------------
consensus_8457#0      TTTTATTTTTATTTAATGGAAAAAATTTTTGGAATTTTCTTTTTTGTGATTTTAAATGTA 735
consensus_8457#2      ------------------------------------------------------------
                                                                                  

consensus_8457#1      ------------------------------------------------------------
consensus_8457#3      ------------------------------------------------------------
consensus_8457#0      CGCGCGCGTGCGTGCGTGCGTGCGTATGTGTGTGTGTGTGTTGGTGTAAGGATGTTATTA 795
consensus_8457#2      ------------------------------------------------------------
                                                                                  

consensus_8457#1      -----------
consensus_8457#3      -----------
consensus_8457#0      AACTCCAATTT 806
consensus_8457#2      -----------