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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8463#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1398 fasta sequence
[CTATAGGCTGTTGCAGATAATCTCATTGTTTTCATTGACAGAGACTTACACGAAGTGGGATCACTTCTTACACCTTCAAGTAGAAGTAATTACAGCAAACTTTTGATGAAAAGCGTTTATAATTTATTTTCACGCTCAAGTATGTGTTGTGTTCGGGGTCTATCTAGTGGCTTACTTTATGGAGACGAAATACTAGTTTCTAATAAAGCCTTAACGGCCAAAAAACATAGAAAACGTCAAGTTAACATTAAAACTCATTGTGAAGAAAATGTATCGGTTTGTAATACGAAGAAAATTTTCTACCCTGAGTTAGATGAAAATGATTCAAAAATCAGCGACGTAATACTTCAAAGTAAGATATCACTATCGCATGCTGGTTCTGAAAAAAATGAATCCCGTAAATATCCTGCAATTATTCTAGAAGGAAGCAAACTAATATCAGATGCACTTGCGACAGGGGCAAAAGCCACCTCTTTGTTCTTTTCTTCACAAGATGTTCTGCAAAAAGTCGGTGATTTAAGCAATGTATTAAATATCTACTACGTCAAGCATCAAGTTATGG-GCCGAATCTCGTCACTTCAATCTCCTCCCGGAGTAATAGCCCTCTTTGAATTACCACAACAAGACTGTTTCAAGAGAAAAAATGCGAAATTTTGCTTACCTGTTACTCTTATACTTGATCGAATTAACGATCCTGGAAATATGGGCAGTTTGATCCGTTCGGGTGCAAGTTTGGGTTTGAATTCTATCTTGGTGACGAAAGTCTTTTCGTTTCAGGCAGTGCCAATATTTGGAATGAAAAAGTGATACGAGCAGGAATGTCTGGTCATTTCCGCATACCTGTATATCAAGGACTGAGCTGGACCGATATTAGTCGATATTTTGGGATATGTGATAGTTCATCTTCTCATGTTATAGTCTTTGTAGCTGACCCTGAACCACTCTTGACTGATAAATTAATCGAATCAGCATGGAAAAAAGACCAAACTAATCATCAGTCACAATATATTAATAAGTGCAAAATATCTGTTGAGTGTGAGGCTGTTGATTTTCTTACTCCTGAGTCAACAGATTCCGCATATCGCTTACCTGTACAAACTATCCCACATTTTTCAGTAAATTATATTCCTTCTGATTATAACTCTGAGGAACATAATTGTCGTTTGGCTGTTGTTATTGGATCTGAAGCTCACGGTGTTTCTCCAGAGGCTTTTCATTTAGTTCATCTTACCGGTGGTTCTCGACTTGTTATTCCATCTGCAGATAGAATAAGCAGCTTG-AATGTTTTATCAGCTGCTTCAGTTTTGCTCGGAGAAATACAACGTCAAT-TTTTATGTTCTTAAT-GGGATGTACTTTTTTTACGAATAAACAGATTTTTATCCNTAAAAAAAAAAAAAA]
[-] EMBL CD146959 [CTATAGGCTGTTGCAGATAATCTCATTGTTTTCATTGACAGAGACTTACACGAAGTGGGATCACTTCTTACACCTTCAAGTAGAAGTAATTACAGCAAACTTTTGATGAAAAGCGTTTATAATTTATTTTCACGCTCAAGTATGTGTTGTGTTCGGGGTCTATCTAGTGGCTTACTTTATGGAGACGAAATACTAGTTTCTAATAAAGCCTTAACGGCCAAAAAACATAGAAAACGTCAAGTTAACATTAAAACTCATTGTGAAGAAAATGTATCGGTTTGTAATACGAAGAAAATTTTCTACCCTGAGTTAGATGAAAATGATTCAAAAATCAGCGACGTAATACTTCAAAGTAAGATATCA ]
[+] EMBL CD141713 [ GTGGCTTACTTTATGGAGACGAAATACTAGTTTCTAATAAAGCCTTAACGGCCAAAAAACATAGAAAACGTCAAGTTAACATTAAAACTCATTGTGAAGAAAATGTATCGGTTTGTAATACGAAGAAAATTTTCTACCCTGAGTTAGATGAAAATGATTCAAAAATCAGCGACGTAATACTTCAAAGTAAGATATCACTATCGCATGCTGGTTCTGAAAAAAATGAATCCCGTAAATATCCTGCAATTATTCTAGAAGGAAGCAAACTAATATCAGATGCACTTGCGACAGGGGCAAAAGCCACCTCTTTGTTCTTTTCTTCACAAGATGTTCTGCAAAAAGTCGGTGATTTAAGCAATGTATTAAATATCTACTACGTCAAGCATCAAGTTATGG GCCGAATCTCGTCACT ]
[+] EMBL CD080397 [ gaggATTAAATATCTACTACGTCAAGCATCAAGTTATGGAGCCGAATCTCGTCACTTCAATCTCCTCCCGGAGTAATAGCCCTCTTTGAATTACCACAACAAGACTGTTTCAAGAGAAAAAATGCGAAATTTTGCTTACCTGTTACTCTTATACTTGATCGAATTAACGATCCTGGAAATATGGGCAGTTTGATCCGTTCGGGTGCAAGTTTGGGTTTGAATTCTATCTTGGTGACGAAAGTCTTTTCGTTTCAGGCAGTGCCAATATTTGGAATGAAAAAGTGATACGAGCAGGAATGTCTGGTCATTTCCGCATACCTGTATATCAAGGACTGAGCTGGACCGATATTAGTCGATATTTTGGGATATGTGATAGTTCATCTTCTCATGTTATAGTCTTTGTAGCTGACCCTGAACCACTCTTGACTGATAAATTAATCGAATCAGCATGGAAAAAAGACCAAACTAATCATCAGTCACAATATATTAATAAGTGCAAAATATCTGTTGAGTGTGAGGCTGTTGATTTTCTTACTCCTGAGTCAACAGATTCCGCATATCGCTTACCTGTACAAACTATCCCACATTTTTCAGTAAATTATATTCCTTCTGATTATAACTCTGAGGAACATAATTGTCGTTTGGCTGTTGTTATTGGATCTGAAGCTCACGGTGTTTCTCCAGAGGCTTTTCATTTAGTTCATCTTACCGGTGGTTCTCGACTTGGTATTCCATCTGCAGATAGAATAAGCAGCTTGAAATG TTTATCAGCTGCTTCAGTTNTGCTCGGAGAAATAC ACGTCATTNNNNTATG TCTTAATGGGGATGTAC TTTTTTACG ATAAACAGAT ]
[-] EMBL CD074490 [ GTGCAAGTTTGGGTTTGAATTCTATCTTGGTGACGAAAGTCTTTTCGTTTCAGGCAGTGCCAATATTTGGAATGAAAAAGTGATACGAGCAGGAATGTCTGGTCATTTCCGCATACCTGTATATCAAGGACTGAGCTGGACCGATATTAGTCGATATTTTGGGATATGTGATAGTTCATCTTCTCATGTTATAGTCTTTGTAGCTGACCCTGAACCACTCTTGACTGATAAATTAATCGAATCAGCATGGAAAAAAGACCAAACTAATCATCAGTCACAATATATTAATAAGTGCAAAATATCTGTTGAGTGTGAGGCTGTTGATTTTCTTACTCCTGAGTCAACAGATTCCGCATATCGCTTACCTGTACAAACTATCCCACATTTTTCAGTAAATTATATTCCTTCTGATTATAACTCTGAGGAACATAATTGTCGTTTGGCTGTTGTTATTGGATCTGAAGCTCACGGTGTTTCTCCAGAGGCTTTTCATTTAGTTCATCTTACCGGTGGTTCTCGACTTGTTATTCCATCTGCAGATAGAATAAGCAGCTTG AATGTTTTATCAGCTGCTTCAGTTTTGCTCGGAGAAATACAACGTCAAT TTTTATGTTCTTAAT GGGATGTACTTTTTTTACGAATAAACAGATT ]
[-] EMBL CD074312 [ GGCAGTGCCAATATTTGGAATGAAAAAGTGATACGAGCAGGAATGTCTGGTCATTTCCGCATACCTGTATATCAAGGACTGAGCTGGACCGATATTAGTCGATATTTTGGGATATGTGATAGTTCATCTTCTCATGTTATAGTCTTTGTAGCTGACCCTGAACCACTCTTGACTGATAAATTAATCGAATCAGCATGGAAAAAAGACCAAACTAATCATCAGTCCCAATATATTAATAAGTGCAAAATATCTGTTGAGTGTGAGGCTGTTGATTTTCTTACTCCTGAGTCAACAGATTCCGCATATCGCTTACCTGTACAAACTATCCCACATTTTTCAGTAAATTATATTCCTTCTGATTATAACTCTGAGGAACATAATTGTCGTTTGGCTGTTGTTATTGGATCTGAAGCTCACGGTGTTTCTCCAGAGGCTTTTCATTTAGTTCATCTTACCGGTGGTTCTCGACTTGTTATTCCATCTGCAGATAGAATAAGCAGCTTG AATGTTTTATCAGCTGCTTCAGTTTTGCTCGGAGAAATACAACGTCAAT TTTTATGTTCTTAAT GGGATGTACTTTTTTTACGAATAAACAGATT ]
[+] EMBL AF030962 [ nTCATCAGTCACAATATATTAATAAGTGCAAAATATCTGTTGAGTGTGAGGCTGTTGATTTTCTTACTCCTGAGTCAACAGATTCCGCATATCGCTTACCTGTACAAACTATCCCACATTTTTCAGTAAATTATATTCCTTCTGATTATAACTCNGAGGAACATAATTGTCGTTTGGCTGTTGTTATTGGATCTGAAGCTCACGGTGTTTCTCCAGAGGCTTTTCATTTAGTTCATCTTACCGGTGGTTCTCGACTTGTTATTCCATCTGCAGATAGAATAAGCAGCTTG AATGTTTTATCANCTGCTTCAGTTTTGCTCGGAGAAATACAACGTCNAN TTTNANNTNCTTAAT GGGATGTACTTTTTTTACNAATAANCAGATTTTTATCCNTAAAAAAAAAAAAAA]
consensusID : consensus_8463#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence
[ATTCTGGAAATATGGGCAGTTTGATCCGTTCGGGTGCAAGTTTGGGTTTGAATTCTATCTTGGTGACGAAAGGCAGTGTCAATATTTGGAATGAAAAAGTGATACGAGCAGGAATGTCTGGTCATTTCCGCATACCTGTATATCAAGGACTGAGCTGGACCGATATTAGTCGATATTTTGGGATATGTGATAGTTCATCTTCTCATGTTATAGTCTTTGTAGCTGACCCTGAACCACTCTTGACTGATAAATTAATCGAATCAGCATGGAAAAAAGACCAAACTAATCATCAGTCACAATATATTAATAAGTGCAAAATATCTGTTGAGTGTGAGGCTGTTGATTTTCTTACTCCTGAGTCAACAGATTCCGCATATCGCTTACCTGTACAAACTATCCCACATTTTTCAGTAAATTATATTCCTTCTGATTATAACTCTGAGGAACATAATTGTCGTTTGGCTGTTGTTATTGGATCTGAAGCTCACGGTGTTTCTCCAGAGGCTTTTCATTTAGTTCATCTTACCGGTGGTTCTCGACTTGTTATTCCATCTGCAGATAGAATAAGCAGCTTGAATGTTTTATCAGCTGCTTCAGTTTTGCTCGGAGAAATACAACGTCAATTTTTATGTTCTTAATGGGATGTATTTTTTTACGAATAAACAGA]
[-] EMBL CD077082 [ATTCTGGAAATATGGGCAGTTTGATCCGTTCGGGTGCAAGTTTGGGTTTGAATTCTATCTTGGTGACGAAAGGCAGTGTCAATATTTGGAATGAAAAAGTGATACGAGCAGGAATGTCTGGTCATTTCCGCATACCTGTATATCAAGGACTGAGCTGGACCGATATTAGTCGATATTTTGGGATATGTGATAGTTCATCTTCTCATGTTATAGTCTTTGTAGCTGACCCTGAACCACTCTTGACTGATAAATTAATCGAATCAGCATGGAAAAAAGACCAAACTAATCATCAGTCACAATATATTAATAAGTGCAAAATATCTGTTGAGTGTGAGGCTGTTGATTTTCTTACTCCTGAGTCAACAGATTCCGCATATCGCTTACCTGTACAAACTATCCCACATTTTTCAGTAAATTATATTCCTTCTGATTATAACTCTGAGGAACATAATTGTCGTTTGGCTGTTGTTATTGGATCTGAAGCTCACGGTGTTTCTCCAGAGGCTTTTCATTTAGTTCATCTTACCGGTGGTTCTCGACTTGTTATTCCATCTGCAGATAGAATAAGCAGCTTGAATGTTTTATCAGCTGCTTCAGTTTTGCTCGGAGAAATACAACGTCAATTTTTATGTTCTTAATGGGATGTATTTTTTTACGAATAAACAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8463#0 CTATAGGCTGTTGCAGATAATCTCATTGTTTTCATTGACAGAGACTTACACGAAGTGGGA 60
consensus_8463#1 ------------------------------------------------------------
consensus_8463#0 TCACTTCTTACACCTTCAAGTAGAAGTAATTACAGCAAACTTTTGATGAAAAGCGTTTAT 120
consensus_8463#1 ------------------------------------------------------------
consensus_8463#0 AATTTATTTTCACGCTCAAGTATGTGTTGTGTTCGGGGTCTATCTAGTGGCTTACTTTAT 180
consensus_8463#1 ------------------------------------------------------------
consensus_8463#0 GGAGACGAAATACTAGTTTCTAATAAAGCCTTAACGGCCAAAAAACATAGAAAACGTCAA 240
consensus_8463#1 ------------------------------------------------------------
consensus_8463#0 GTTAACATTAAAACTCATTGTGAAGAAAATGTATCGGTTTGTAATACGAAGAAAATTTTC 300
consensus_8463#1 ------------------------------------------------------------
consensus_8463#0 TACCCTGAGTTAGATGAAAATGATTCAAAAATCAGCGACGTAATACTTCAAAGTAAGATA 360
consensus_8463#1 ------------------------------------------------------------
consensus_8463#0 TCACTATCGCATGCTGGTTCTGAAAAAAATGAATCCCGTAAATATCCTGCAATTATTCTA 420
consensus_8463#1 ------------------------------------------------------------
consensus_8463#0 GAAGGAAGCAAACTAATATCAGATGCACTTGCGACAGGGGCAAAAGCCACCTCTTTGTTC 480
consensus_8463#1 ------------------------------------------------------------
consensus_8463#0 TTTTCTTCACAAGATGTTCTGCAAAAAGTCGGTGATTTAAGCAATGTATTAAATATCTAC 540
consensus_8463#1 ------------------------------------------------------------
consensus_8463#0 TACGTCAAGCATCAAGTTATGGGCCGAATCTCGTCACTTCAATCTCCTCCCGGAGTAATA 600
consensus_8463#1 ------------------------------------------------------------
consensus_8463#0 GCCCTCTTTGAATTACCACAACAAGACTGTTTCAAGAGAAAAAATGCGAAATTTTGCTTA 660
consensus_8463#1 ------------------------------------------------------------
consensus_8463#0 CCTGTTACTCTTATACTTGATCGAATTAACGATCCTGGAAATATGGGCAGTTTGATCCGT 720
consensus_8463#1 -------------------------------ATTCTGGAAATATGGGCAGTTTGATCCGT 29
** **************************
consensus_8463#0 TCGGGTGCAAGTTTGGGTTTGAATTCTATCTTGGTGACGAAAGTCTTTTCGTTTCAGGCA 780
consensus_8463#1 TCGGGTGCAAGTTTGGGTTTGAATTCTATCTTGGTGACGAAAG--------------GCA 75
******************************************* ***
consensus_8463#0 GTGCCAATATTTGGAATGAAAAAGTGATACGAGCAGGAATGTCTGGTCATTTCCGCATAC 840
consensus_8463#1 GTGTCAATATTTGGAATGAAAAAGTGATACGAGCAGGAATGTCTGGTCATTTCCGCATAC 135
*** ********************************************************
consensus_8463#0 CTGTATATCAAGGACTGAGCTGGACCGATATTAGTCGATATTTTGGGATATGTGATAGTT 900
consensus_8463#1 CTGTATATCAAGGACTGAGCTGGACCGATATTAGTCGATATTTTGGGATATGTGATAGTT 195
************************************************************
consensus_8463#0 CATCTTCTCATGTTATAGTCTTTGTAGCTGACCCTGAACCACTCTTGACTGATAAATTAA 960
consensus_8463#1 CATCTTCTCATGTTATAGTCTTTGTAGCTGACCCTGAACCACTCTTGACTGATAAATTAA 255
************************************************************
consensus_8463#0 TCGAATCAGCATGGAAAAAAGACCAAACTAATCATCAGTCACAATATATTAATAAGTGCA 1020
consensus_8463#1 TCGAATCAGCATGGAAAAAAGACCAAACTAATCATCAGTCACAATATATTAATAAGTGCA 315
************************************************************
consensus_8463#0 AAATATCTGTTGAGTGTGAGGCTGTTGATTTTCTTACTCCTGAGTCAACAGATTCCGCAT 1080
consensus_8463#1 AAATATCTGTTGAGTGTGAGGCTGTTGATTTTCTTACTCCTGAGTCAACAGATTCCGCAT 375
************************************************************
consensus_8463#0 ATCGCTTACCTGTACAAACTATCCCACATTTTTCAGTAAATTATATTCCTTCTGATTATA 1140
consensus_8463#1 ATCGCTTACCTGTACAAACTATCCCACATTTTTCAGTAAATTATATTCCTTCTGATTATA 435
************************************************************
consensus_8463#0 ACTCTGAGGAACATAATTGTCGTTTGGCTGTTGTTATTGGATCTGAAGCTCACGGTGTTT 1200
consensus_8463#1 ACTCTGAGGAACATAATTGTCGTTTGGCTGTTGTTATTGGATCTGAAGCTCACGGTGTTT 495
************************************************************
consensus_8463#0 CTCCAGAGGCTTTTCATTTAGTTCATCTTACCGGTGGTTCTCGACTTGTTATTCCATCTG 1260
consensus_8463#1 CTCCAGAGGCTTTTCATTTAGTTCATCTTACCGGTGGTTCTCGACTTGTTATTCCATCTG 555
************************************************************
consensus_8463#0 CAGATAGAATAAGCAGCTTGAATGTTTTATCAGCTGCTTCAGTTTTGCTCGGAGAAATAC 1320
consensus_8463#1 CAGATAGAATAAGCAGCTTGAATGTTTTATCAGCTGCTTCAGTTTTGCTCGGAGAAATAC 615
************************************************************
consensus_8463#0 AACGTCAATTTTTATGTTCTTAATGGGATGTACTTTTTTTACGAATAAACAGATTTTTAT 1380
consensus_8463#1 AACGTCAATTTTTATGTTCTTAATGGGATGTA-TTTTTTTACGAATAAACAGA------- 667
******************************** ********************
consensus_8463#0 CCNTAAAAAAAAAAAAAA 1398
consensus_8463#1 ------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||