|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8464#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1019 fasta sequence
[TTTTTTTTTTTTTTTTGTTCAATATTATCATTTTTATTAGAAGAAAATTAATACATAAATTAATTACGAATACTATACATAAATCATAAGTTGATACAGTTGATTATATAAATAATGAAACCTATTACAACCATTATCACGTATGTAATAGAAAATCACAAATAGGGTTTAAATTAGGAAATATGAAGGGAGAGAGAAGGGAAAATATCTGGTAAGAAAGAGCATGACAAAGACAAACGACCATTTTAAAGATTAAAGTAAAACTGGATCAGAGAGAATGTTTACTTGGAAGACTGTGTAAATAAATAAATAGATACCATAGCCATGGAACTTTACAAACTAGACCAAACAATTGCTTTCCTAATACGTTCACATGAAACAAGAGAA-TACCAGTCGGATTCCAATGACAACAGACGACAATATTTGTGTGATCACGGAGACAAATTTCTAAATTCCCTGAAACTGTACTCCAAATATAAACCCCACCATCATGTCCACCAGCAGCTACATAATCTGAGTCAGGTGAGAAACATGGCCGAACTATGTCTAAACCTGTCTGAAAACCATCAGCTTTCAAGCATTGCGTAACTTGATTCGTACGTAAATCCACAATTTCTAAAGTGTTGTTACGTGTACAAGCTAAAACAGTTGTGAAATCAGAGGAAATGTCCATGCCAGTAATACGCCCGGAGAGCAAAATTTTGTTAGTATTTTCTCCAGATCGTTCATCCCAAATACGTAAATGTTGATCAAAATGGCCAGTAACAAGCGCAGACATGGAGGGACAAACAACTACATCTTGGAATGTGGAAGCAGCCATGATGGTACGCCTACAACAGCACTTGTCAACGTCCCAAATCTTGATCGTTCTGTCTGATGAAGCAGTAACAACGCGGTTAGCAGACCCCATGAATNTAGCAGAGATAACACGCTTCAGAATGCCCTGTCAAGTTGACTCGAAGTCTGGAATCATTTAGTGGTCATACACGACAAGAAAAATCACTTGACAGGGCATTCTG]
[+] EMBL AI395289 [TTTTTTTTTTTTTTTTGTTCAATATTATCATTTTTATTAGAAGAAAATTAATACATAAATTAATTACGAATACTATACATAAATCATAAGTTGATACAGTTGATTATATAAATAATGAAACCTATTACAACCATTATCACGTATGTAATAGAAAATCACAAATAGGGTTTAAATTAGGAAATATGAAGGGAGAGAGAAGGGAAAATATCTGGTAAGAAAGAGCATGACAAAGACAAACGACCATTTTAAAGATTAAAGTAAAACTGGATCAGAGAGAATGTTTACTTGGAAGACTGTGTAAATAAATAAATAGATACCATAGCCATGGAACTTTACAAACTAGACCAAACAATTGCTTTCCTAATACGTTCACATGAAACAAGAGAA TACCAGTCGGATTCC ]
[+] EMBL CD135923 [ GAGAGAGAAGGGAAAATATCTGGTAAGAAAGAGCATGACAAAAACAAACGACCATTTTAAAGATTAAAGTAAAACTGGATCAGAGAGAATGTTTACTTGGAAGACTGTGTAAATAAATAAATAAATACCATAGCCATGGAACTTTACAAACTAGACCAAACAATTGCTTTCTTAATACGTTCACATGAAACAAGAGAATTACCATTCGGATTCCAATGACAACAGACGACAATATTTGTGTGATCACGGAGACAAATTTCTAAATTCCCTGAAACT ]
[+] EMBL CD145017 [ TGTGTGATCACGGAGACAAATTTCTAAATTCCCTGAAACTGTACTCCAAATATAAACCCCACCATCATGTCCACCAGCAGCTACATAATCTGAGTCAGGTGAGAAACATGGCCGAACTATGTCTAAACCTGTCTGAAAACCATCAGCTTTCAAGCATTGCGTAACTTGATTCGTACGTAAATCCACAATTTCTAAAGTGTTGTTACGTGTACAAGCTAAAACAGTTGTGAAATCAGAGGAAATGTCCATGCCAGTAATACGCCCGGAGAGCAAAATTTTGTTAGTATTTTCTCCAGATCGTTCATCCCAAATACGTAAATGTTGATCAAAATGGCCAGTAACAAGCGCAGACATGGAGGGACAAACAACTACATCTTGGAATGTGGAAGCAGCCATGATGGTACGCCTACAACAGCACTTGTCAACGTCCCAAATCTTGATCGTTCTGTCTGATGAAGCAGTAACAACGCGGTTAGCAGACCCCATGAATNTAGCAGAGATAACACGCTTCAGAATGCCCTGTCAAGTTGACTCGAAGTCTGGAATCATTTAGTGGTCATACACGACAAGAAAAATCACTTGACAGGGCATTCTG]
consensusID : consensus_8464#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 776 fasta sequence
[TGTAATGTGTAAGCAGCCATGATGGTACGCCTCCATCAGCACTTGTCAACGTCCCAAATCTTGATCGTTCTGTCTGATGAAGCAGTAACAACGCGGTTAGCAGACCCCATGAATTTAGCAGAGATAACACGCTCAGAATGCCCTGTCAAGTTGACTCGAAGTCTGGAATCATTTAGTGTCCATACACGACAAGAAAAATCACTTGACGCACCTAAAACAGCAGTTTCATTTGGGTCAAAATCTATGGCAGTGACAGCAGCATTACAACCATCAAGGGTTGAATGGATTTCACATTTTCCATTTAGATATGTCCATAATCGGAGTTTACGATCAAACCCTGCTGATCCGAAAATGTGGCCTGACGGAGTGAATCGAACGCTATTTACTTCATTTTCGTTAGCATCTATTTTGACTGCAACATTACGCGGAAGTGCAGATTTACAGGGT-ATGGTTTGTCCGAACAATCACTATCAGTAACGAATATAGTTGAATTAACTGCATCTTGAAGATTTTTGCGGATTGTTTCTTGAG-----CTATATTGTACATCATACTCAATATTTTTTAACCTTTCAACAGTGGATTGGAGAGCCTTTATTCGTTTCATGAGTTGCAGATTATCATCCTCAAGTTGCCTGTTTTTTGTTTCTAGTGCCTTCGTGGTCAGTAAGTGTGAGGCCTGTTCATCTGTAAGCAATTCTTTAGTCTCCTCCAGCTCCTTAANCCTCTCCATCAAGTGATGGTTCTGCGCTTGGTTAGCCTTAAGACAGTCTTCTAACTC]
[-] EMBL AI975570 [TGTAATGTGTAAGCAGCCATGATGGTACGCCTCCATCAGCACTTGTCAACGTCCCAAATCTTGATCGTTCTGTCTGATGAAGCAGTAACAACGCGGTTAGCAGACCCCATGAATTTAGCAGAGATAACACGCTCAGAATGCCCTGTCAAGTTGACTCGAAGTCTGGAATCATTTAGTGTCCATACACGACAAGAAAAATCACTTGACGCACCTAAAACAGCAGTTTCATTTGGGTCAAAATCTATGGCAGTGACAGCAGCATTACAACCATCAAGGGTTGAATGGATTTCACATTTTCCATTTAGATATGTCCATAATCGGAGTTTACGATCAAACCCTGCTGATCCGAAAATGTGGCCTGACGGAGTGAATCGAACGCTATTTACTTCATTTTCGTTAGCATCTATTTTGACTGCAACATTACGCGGAAGTGC ]
[+] EMBL CD188012 [ CGAACGCTATTTACTTCATTTTCGTTAGCGTCTATTTTGACTGCAACATTACGCGGAAGTGCAGATTTACAGGGT ATGGTTTGTCCGAACAATCACTATCAGTAACGAATATAGTTGAATTAACTGCATCTTGAAGATTTTTGCGGATTGTTTCTTGAGCTTTTCTATATTGTACATCATACTCAATATTTTTTAACCTTTCAACAGTGGATTGGAGAGCCTTTATTCGTTTCATGAGTTGCAGATTATCATCCTCAAGTTGCCTGTTTTTTGTTTCTAGTGCCTTCGTGGTCAGTAAGTGTGAGGCCTGTTCATCTGTAAGCAATTCTTTAGTCTCCTCCAGCTCCTTAANCCTCTCCATCAAGTGATGGTTCTGCGCTTGGTTAGCCTTAAGACAGTCTTCTAACTC]
[+] EMBL CD201166 [ CGCTATTTACTTCACTTTCGTTAGCATCTATTTTGACTGCAACATTACGCGGAAGTGCAGATTTACAGGGTAATGGTTTGTCCGAACAATCACTATCAGTAACGAATATAGTTGAATTAACTGCATCTTGAAGATTTTTGCGGATTGTTTCTTGAG CTATATTGTACATCATACTCAATATTTTTTAACCTTTCAACAGTGGATTGGAGAGCCTTTATTCGTTTCATGAGTTGCAGATTATCATCCTCAAGTTGCCTGTTTTTTG ]
consensusID : consensus_8464#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence
[TTTTTTTTTTTTTTTGTTCAATATTATCATTTTTATTAGAAGAAAATTAATACATAAATTAATTACGAATACTATACATAAATCATAAGTTGATACAGTTGATTATATAAATAATGAAACCTATTACAACCATTATCACGTATGTAATAGAAAATCACAAATAGGGTTTAAATTAGGAAATATGAAGGGAGAGAGAAGGGAAAATATCTGGTAAGAAAGAGCATGACAAAAACAAACGACCATTTTAAAGATTAAAGTAAAACTGGATCAGAGAGAATGTTTACTTGGAAGACTGTGTAAATAAATAAATAAATACCATAGCCATGGAACTTTACAAACTAGACCAAACAATTGCTTTCTTAATACGTTCACATGAAACAAGAGAATACCATTCGGATTCCAATGACAACAGACGACAATATTTCTGAAATGAAACAGACGAAATAAAGATTTGAGTTTAAACTGAGTGA]
[+] EMBL AI395278 [TTTTTTTTTTTTTTTGTTCAATATTATCATTTTTATTAGAAGAAAATTAATACATAAATTAATTACGAATACTATACATAAATCATAAGTTGATACAGTTGATTATATAAATAATGAAACCTATTACAACCATTATCACGTATGTAATAGAAAATCACAAATAGGGTTTAAATTAGGAAATATGAAGGGAGAGAGAAGGGAAAATATCTGGTAAGAAAGAGCATGACAAAAACAAACGACCATTTTAAAGATTAAAGTAAAACTGGATCAGAGAGAATGTTTACTTGGAAGACTGTGTAAATAAATAAATAAATACCATAGCCATGGAACTTTACAAACTAGACCAAACAATTGCTTTCTTAATACGTTCACATGAAACAAGAGAATACCATTCGGATTCCAATGACAACAGACGACAATATTTCTGAAATGAAACAGACGAAATAAAGATTTGAGTTTAAACTGAGTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8464#0 TTTTTTTTTTTTTTTTGTTCAATATTATCATTTTTATTAGAAGAAAATTAATACATAAAT 60
consensus_8464#2 -TTTTTTTTTTTTTTTGTTCAATATTATCATTTTTATTAGAAGAAAATTAATACATAAAT 59
consensus_8464#1 ----------------------------------------------TGTAATGTGTAAGC 14
**** ***
consensus_8464#0 TAATTACGAATACTATACATAAATCATAAGTTGATACAGTTGATTATATAAATAATGAAA 120
consensus_8464#2 TAATTACGAATACTATACATAAATCATAAGTTGATACAGTTGATTATATAAATAATGAAA 119
consensus_8464#1 -AGCCATGA-TGGTACGCCTCCATCAGCACTTGTCAACGTCCCAAATCTTGATCGTTCTG 72
* * ** * ** * * **** * *** * ** ** * ** *
consensus_8464#0 CCTATTACAACCATTATCACGTATGTAATAGAAAATCACAAATAGGGTTTAAATTAGGAA 180
consensus_8464#2 CCTATTACAACCATTATCACGTATGTAATAGAAAATCACAAATAGGGTTTAAATTAGGAA 179
consensus_8464#1 TCTGATGAAGCAGTAACAACGCGGTTAGCAGACC-CCATGAATTTAGCAGAGATAACACG 131
** * * * * * *** ** *** ** *** * * ** *
consensus_8464#0 ATATGAAGGGAGAGAGAAGGGAAAATATCTGGTAAGAAAGAGCATGACAAAGACAAACGA 240
consensus_8464#2 ATATGAAGGGAGAGAGAAGGGAAAATATCTGGTAAGAAAGAGCATGACAAAAACAAACGA 239
consensus_8464#1 CTCAGAATGCCCTGTCAAGTTGACTCG--AAGTCTGGAATCATTTAGTGTCCATACACGA 189
* *** * * *** * ** * ** * * * ****
consensus_8464#0 CCATTTTAAAGATTAAAGTAAAACTGGATCAGAGAGAATGTTTACTTGGAAGACTGTGTA 300
consensus_8464#2 CCATTTTAAAGATTAAAGTAAAACTGGATCAGAGAGAATGTTTACTTGGAAGACTGTGTA 299
consensus_8464#1 CAAGAAAAATCACTTGA-CGCACCTAAAACAGCAGTTTCATTTGGGTCAAAATCTATGGC 248
* * ** * * * * ** * *** *** * ** ** **
consensus_8464#0 AATAAATAAATAGATACCATAGCCATGGAACTTTACAAACTAGACCAAACAATTGCTTTC 360
consensus_8464#2 AATAAATAAATAAATACCATAGCCATGGAACTTTACAAACTAGACCAAACAATTGCTTTC 359
consensus_8464#1 AGTGAC--AGCAG-CATTACAACCATCAAGGGTTG---AATGGATTTCACATTTTCCATT 302
* * * * * * * * **** * ** * * ** *** ** * *
consensus_8464#0 CTAATACGTTCACATGAAACAAGAGAATACCAGTCGGATTCCAATGACAACAGACGACAA 420
consensus_8464#2 TTAATACGTTCACATGAAACAAGAGAATACCATTCGGATTCCAATGACAACAGACGACAA 419
consensus_8464#1 TAGATATGTCCATA----ATCGGAGTTTACGA-TCAAACCCTGCTGATC-----CGAAAA 352
*** ** ** * * *** *** * ** * * *** *** **
consensus_8464#0 TATTTGTGTGATCACGGAGACAAATTTCTAAATTCC-CTGAAACTGTACTCCAAATATAA 479
consensus_8464#2 TATTTCTGAAATGAAACAGACGAAATAAAGATTTGAGTTTAAACTGAGTGA--------- 470
consensus_8464#1 TGTG-GCCTGACGGAGTGAATCGAACGCTATTTACTTCATTTTCGTTAGCATCTATTTTG 411
* * * * * * *
consensus_8464#0 ACCCCACCATCATGTCCACCAGCAGCTACATAATCTGAGTCAGGTGAGAAACATGGCCGA 539
consensus_8464#2 ------------------------------------------------------------
consensus_8464#1 ACTGCAACATTACGCGGAAGTGCAGATTTACAGGGTATGGTTTGTCCGAACAATCACT-- 469
consensus_8464#0 ACTATGTCTAAACCTGTCTGAAAACCATCAGCTTTCAAGCATTGCGTAACTTGATTCGTA 599
consensus_8464#2 ------------------------------------------------------------
consensus_8464#1 ATCAGTAACGAATATAGTTGAATTAACTGCATCTTGAAGATTTTTGCGGATTGTTTCTTG 529
consensus_8464#0 CGTAAATCCACAATTTCTAAAGTGTTGTTACGTGTACAAGCTAAAACAGTTGTGAAATCA 659
consensus_8464#2 ------------------------------------------------------------
consensus_8464#1 AGCTATATTGTACATCATAC----TCAATATTTTTTAACCTTTCAACAGTGG----ATTG 581
consensus_8464#0 GAGGAAATGTCCATGCCAGTAATACGCCCGGAGAGCAAAATTTTGTTAG-TATTTTCTCC 718
consensus_8464#2 ------------------------------------------------------------
consensus_8464#1 GAGAGCCTTTATTCGTTTCATGAGTTGCAGATTATCATCCTCAAGTTGCCTGTTTTTTGT 641
consensus_8464#0 AGATCGTTCATCCCAAATACGTAAATGTTGATCAAAATGGCCAGTAACAAGCGCAGACAT 778
consensus_8464#2 ------------------------------------------------------------
consensus_8464#1 TTCTAGTGCCTTCGTGGTCAGTAAGTGTGAGGCCTGTTCATCTGTAA-----GCAATTCT 696
consensus_8464#0 GGAGGGACAAACAACTACATCTTGGAATGTGGAAGCAGCCATGATGGTACGCCTACAACA 838
consensus_8464#2 ------------------------------------------------------------
consensus_8464#1 TTAGTCTCCTCCAGCTCC--TTAANCCTCTCCATCAAGTGATGGTTCTGCGCTTGGTTAG 754
consensus_8464#0 GCACTTGTCAACGTCCCAAATCTTGATCGTTCTGTCTGATGAAGCAGTAACAACGCGGTT 898
consensus_8464#2 ------------------------------------------------------------
consensus_8464#1 CCTTAAGACAGTCTTCTAACTC-------------------------------------- 776
consensus_8464#0 AGCAGACCCCATGAATNTAGCAGAGATAACACGCTTCAGAATGCCCTGTCAAGTTGACTC 958
consensus_8464#2 ------------------------------------------------------------
consensus_8464#1 ------------------------------------------------------------
consensus_8464#0 GAAGTCTGGAATCATTTAGTGGTCATACACGACAAGAAAAATCACTTGACAGGGCATTCT 1018
consensus_8464#2 ------------------------------------------------------------
consensus_8464#1 ------------------------------------------------------------
consensus_8464#0 G 1019
consensus_8464#2 -
consensus_8464#1 -
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||