These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8466#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1117 fasta sequence [TTTCGAGAATTGAGTGCCAGGGAGATATTTATGTGGTCTGATGA-GAATCGTTATCCAGAAAAACTAACGTCACCAGTTCTGTAGGTCACCAAAACAACCTGGCCGAAAAAAAGGCTGAGGACAAAAACAATTTTTTATCTTTGTGTTGCCTGGCTGATCCTGTTTGGGAATTATTGGACCCTCTACCAGATATCAGATTGCTGTTTTCCTCTTTCGACAGTCAGTTTTTCGGAAATTCTCTTGGATGTGTAGAAGTTAAATGGAGCTCTCGGATGACGCTTTGTGCAGGAGTTTGCAAATTTCACAAACCTTATGGAATGTGTTCCATCAGCCTAAGTGAACCTCTACTGAAATTTAGACCGCGGAAAGATCTCGTGGAGACTCTGCTGCATGAAATGATTCATGCATTTTTATTCATAACAAGGAGGGACAAGGATCGTGATGACCATGGACCCAATTTCATATCGCACATGCATCGCATCAATTCGTTGGCTGGAGTAAATATTACTGTTTACCACTCATTTCATGATGAAGTTGATACATATCGCACTCACTGGTGGCGTTGTACCGGTCCATGTCGCGACCGTCCACCATACTTTGGCTATGTTAAACGTTCTATGAATAGAGTGCCTGGTCCTAAGGATACTTGGTGGAGTCAGCATCAAGCTACTTGTATAGGTAGATTTATAAAAATCAAGGAACCAGTCAAGAAAGTTCCATCTAAACGGAAAACTTCTCTTGAATCCAGTTCAAAAGACCAATCTACATCAAAAAAACAAATTAGGAGTGGTGATATTCGAAAGTTTGTCACCATTAATGATGTGAAAGAAAATACCTCTACAGAATTCGCTAGTCATCCGAACAATGGTGGAAGCAGTTATTCATCAGTTCATGTTTGGCCTAGCGATGATAAAGGTCATATCCTNCGAAATGGTCATTCGTCATGTCAAGATATGGCACTGGTCGAATCGAAACCAAATGTAGTTGAAACAATTGATTTATCAGAAGTATCCTGCCCTAACTGCTCTTGTACTGTTTTGCTCTCTCGGATTAATCAACACTTAGATATTTGCCTTTCATAGAACTATTTTTACAAATTTTTGAAAATAAACTTCTT] [+] EMBL CD120571 [TTTCGAGAATTGAGTGCCAGGGAGATATTTATGTGGTCTGATGACGAATCGTTATCCAGAAAAACTAACGTCACCAGTTCTGTAGGTCACCAAAACAACCTGACCG AAAAAAGGCTGAGGACAAAAACAATTTTTT ] [-] EMBL CD097147 [ GAATTGAGTGCCAGGGAGATATTTATGTGGTCTGATGACGAATCGTNATCCAGAAAAACTAACGTCACCAGTTCTGTAGGTCACCAAAACAACCTGGCCGAAAAAAAGGCCGAGGACAAAAACAATTTTTTATCTTTGTGTTGCCTGGCTGATCCTGTTTGGGAATTATTGGACCCTCTACCAGATATCAGATTGCTGTTT ] [+] EMBL CD081868 [ g agggCGTTATCCAGAAAAACTAACGTCACCAGTTCTGTAGGTCACCAAAACAACCTGGCCGAAAAAAAGGCTGAGGACAAAAACAATTTTTTATCTTTGTGTTGCCTGGCTGATCCTGTTTGGGAATTATTGGACCCTCTACCAGATATCAGATTGCTGTTTTCCTCTTTCGACAGTCAGTTTTTCGGAAATTCTCTTGGATGTGTAGAAGTTAAATGGAGCTCTCGGATGACGCTTTGTGCAGGAGTTTGCAAATTTCACAAACCTTATGGAATGTGTTCCATCAGCCTAAGTGAACCTCTACTGAAATTTAGACCGCGGAAAGATCTCGTGGAGACTCTGCTGCATGAAATGATTCATGCATTTTTATTCATAACAAGGAGGGACAAGGATCGTGATGACCATGGACCCAATTTCATATCGCACATGCATCGCATCAATTCGTTGGCTGGAGTAAATATTACTGTTTACCACTCATTTCATGATGAAGTTGATACATATCGCACTCACTGGTGGCGTTGTACCGGTCCATGTCGCGACCGTCCACCATACTTTGGCTATGTTAAACGTTCTATGAATAGAGTGCCTGGTCCTAAGGATACTTGGTGGAGTCAGCATCAAGCTACTTGTATAGGTAGATTTATAAAAATCAAGGAACCAGTCAA ] [+] EMBL CD078777 [ ACAAACCTTATGGAATGTGTTCCATCAGCCTAAGTGAACCTCTACTGAAATTTAGACCGCGGAAAGATCTCGTGGAGACTCTGCTGCATGAAATGATTCATGCATTTTTATTCATAACAAGGAGGGACAAGGATCGTGATGACCATGGACCCAATTTCATATCGCACATGCATCGCATCAATTCGTTGGCTGGAGTAAATATTACTGTTTACCACTCATTTCATGATGAAGTTGATACATATCGCACTCACTGGTGGCGTTGTACCGGTCCATGTCGCGACCGTCCACCATACTTTGGCTATGTTAAACGTTCTATGAATAGAGTGCCTGGTCCTAAGGATACTTGGTGGAGTCAGCATCAAGCTACTTGTATAGGTAGATTTATAAAAATCAAGGAACCAGTCAAGAAAGTTCCATCTAAACGGAAAACTTCTCTTGAATCCAGTTCAAAAGACCAATCTACATCAAAAAAACAAATTAGGAGTGGTGATATTCGAAAGTTTGTCACCATTAATGATGTGAAAGAAAATACCTCTACAGAATTCGCTAGTCATCCGAACAATGGTGGAAGCAGTTATTCATCAGTTCATGTTTGGCCTAGCGATGATAAAGGTCATATCCTNCGAAATGGTCATTCGTCAT ] [-] EMBL CD076473 [ TATANCTGTTTACCACTCATTTCATGATGAAGTTGATACATATCGCACTCACTGGTGGCGTTGTACCGGTCCATGTCGCGACCGTCCACCATACTTTGGCTATGTTAAACGTTCTATGAATAGAGTGCCTGGTCCTAAGGATACTTGGTGGAGTCAGCATCAAGCTACTTGTATAGGTAGATTTATAAAAATCAAGGAACCAGTCAAGAAAGTTCCATCTAAACGGAAAACTTCTCTTGAATCCAGTTCAAAAGACCAATCTACATCAAAAAAACAAATTAGGAGTGGTGATATTCGAAAGTTTGTCACCATTAATGATGTGAAAGAAAATACCTCTACAGAATTCGCTAGTCATCCGAACAATGGTGGAAGCAGTTATTCATCAGTTCATGTTTGGCCTAGCGATGATAAAGGTCATATCCTCGGAAATGGTCATTCGTCATGTCAAGATATGGCACTGGTCGAATCGAAACCAAATGTAGTTGAAACAATTGATTTATCAGAAGTATCCTGCCCTAACTGCTCTTGTACTGTTTTGCTCTCTCGGATTAATCAACACTTAGATATTTGCCTTTCATAGAACTATTTTTACAAATTTTTGAAAATAAACTTCTT] consensusID : consensus_8466#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence [CANATTTTATGTGGTCTGATGACGAATCGTTTTCCAGAAAAACTAACGTCACCAGGTCTGTAGGTCACCAAAACAACCTGGNCCGAAAAAAAGGTACGCTTTTATTCACTATAGTCCTACTTATGGGACAGGCTGAGGACAAAAACAATTTTTTATCTTTGTGTTGCCTGGCTGATCCTGTTTGGGAATTATTGGACCCTCTACCAGATGTGGGATTGCTGTTTTCCTCTTTCGACAGTCAGTTTTTCGGAAATTCTCTTGGATGTGTAGAAGTTAAATGGAGCTCTCGGATGACGCTTTGTGCAGGAGTTTGCAAATTTCACAAACCTTATGGAATGTGTTCCATCAGCCTAAGTGAACCTCTACTGAAATTTAGACCGCGGAAAGATCTCGTGGAGACTCTGCTGCATGAAATGATTCATGCATTTTTATTCATAACAAGGAGGGACAAGGATCGTGATGACCATGGACCCAATTTCATATCGCACATGCATCGCATCAATTCGTTGGCTGGAGTAAATATTACTGTTTACCACTCATTTCATGATGAAGTTGATACATATCGCACTCACTGGTGGCGTTGTACCGGTCCATGTCGCGACCGTCCACCATACTTTGGCTATGTTAA] [+] EMBL CD082889 [CANATTTTATGTGGTCTGATGACGAATCGTTTTCCAGAAAAACTAACGTCACCAGGTCTGTAGGTCACCAAAACAACCTGGNCCGAAAAAAAGGTACGCTTTTATTCACTATAGTCCTACTTATGGGACAGGCTGAGGACAAAAACAATTTTTTATCTTTGTGTTGCCTGGCTGATCCTGTTTGGGAATTATTGGACCCTCTACCAGATGTGGGATTGCTGTTTTCCTCTTTCGACAGTCAGTTTTTCGGAAATTCTCTTGGATGTGTAGAAGTTAAATGGAGCTCTCGGATGACGCTTTGTGCAGGAGTTTGCAAATTTCACAAACCTTATGGAATGTGTTCCATCAGCCTAAGTGAACCTCTACTGAAATTTAGACCGCGGAAAGATCTCGTGGAGACTCTGCTGCATGAAATGATTCATGCATTTTTATTCATAACAAGGAGGGACAAGGATCGTGATGACCATGGACCCAATTTCATATCGCACATGCATCGCATCAATTCGTTGGCTGGAGTAAATATTACTGTTTACCACTCATTTCATGATGAAGTTGATACATATCGCACTCACTGGTGGCGTTGTACCGGTCCATGTCGCGACCGTCCACCATACTTTGGCTATGTTAA] consensusID : consensus_8466#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence [GATTTATAAAAATCAAGGAACCAGTCAAGAAAGTTCCATTTAAACGGAAAATTTTTTTTGAATCCAGTTCAAAAGACCCATTTACATCAAAAAAACAAATTAGGAGGGGTGAAATTTGAAAGTTTGTCCCCATTAATGATGTGAAAAAAAAAACCTTTACAGAATTTGGTAGTCATCCGAACAATGGGGGAAGCAGTTATTCATCAGTTCATGTTTGGCCCAGCGATGAAAAAGGTCAAATCCTCGGAAAAGGTCATTTGTCATGTCAAAAAAAGGCCCTGGTGGAATTGAAACCAAATGTAGTTGAAACAATTGATTTATCAAAAGGATCCTGCCCCAACGGGTTTTGGACTGTTTTGCTTTTTCGGATTAATCAACCCTTAAAAATTTGCCTTTCAAAAAAAAATTTTTACAAATTTTTGAAAAAAAACTTTTT] [-] EMBL CD073237 [GATTTATAAAAATCAAGGAACCAGTCAAGAAAGTTCCATTTAAACGGAAAATTTTTTTTGAATCCAGTTCAAAAGACCCATTTACATCAAAAAAACAAATTAGGAGGGGTGAAATTTGAAAGTTTGTCCCCATTAATGATGTGAAAAAAAAAACCTTTACAGAATTTGGTAGTCATCCGAACAATGGGGGAAGCAGTTATTCATCAGTTCATGTTTGGCCCAGCGATGAAAAAGGTCAAATCCTCGGAAAAGGTCATTTGTCATGTCAAAAAAAGGCCCTGGTGGAATTGAAACCAAATGTAGTTGAAACAATTGATTTATCAAAAGGATCCTGCCCCAACGGGTTTTGGACTGTTTTGCTTTTTCGGATTAATCAACCCTTAAAAATTTGCCTTTCAAAAAAAAATTTTTACAAATTTTTGAAAAAAAACTTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8466#0 TTTCGAGAATTGAGTGCCAGGGAGATATTTATGTGGTCTGATGA-GAATCGTTATCCAGA 59 consensus_8466#1 ---------------------CANAT-TTTATGTGGTCTGATGACGAATCGTTTTCCAGA 38 consensus_8466#2 ------------------------------------------------------------ consensus_8466#0 AAAACTAACGTCACCAGTTCTGTAGGTCACCAAAACAACCTGGCCGAAAAAAA------- 112 consensus_8466#1 AAAACTAACGTCACCAGGTCTGTAGGTCACCAAAACAACCTGGNCCGAAAAAAAGGTACG 98 consensus_8466#2 -----------------------GATTTATAAAAATCAAGGAACCAGTCAAGAA------ 31 * * **** * * ** * consensus_8466#0 --------------------------------GGCTGAGGACAAAAACAATTTTTTATCT 140 consensus_8466#1 CTTTTATTCACTATAGTCCTACTTATGGGACAGGCTGAGGACAAAAACAATTTTTTATCT 158 consensus_8466#2 --------------------------------AGTTCCATTTAAACGGAAAATTTTTTTT 59 * * *** ** **** * * consensus_8466#0 TTGTGTTGCCTGGCTGATCCTGTTTGGGAATTATTGGACCCTCTACCAGATATCAGATT- 199 consensus_8466#1 TTGTGTTGCCTGGCTGATCCTGTTTGGGAATTATTGGACCCTCTACCAGATGTGGGATT- 217 consensus_8466#2 GAATCCAGTTCAAAAGACCCA--TTTACATCAAAAAAACAAATTAGGAGGGGTGAAATTT 117 * * ** ** ** * * ** ** ** * *** consensus_8466#0 -GCTGTTTTCCTCTTTCGACAGTCAGTTTTTCGGAAATTCTCTTGGATGTGTAGAAGTTA 258 consensus_8466#1 -GCTGTTTTCCTCTTTCGACAGTCAGTTTTTCGGAAATTCTCTTGGATGTGTAGAAGTTA 276 consensus_8466#2 GAAAGTTTGTCCCCATTAATGAT--GTGAAAAAAAAAACCTTTACAGAATTTGGTAGTCA 175 **** * * * * * ** *** ** * * * * *** * consensus_8466#0 AATGGAGCTCTCGGATGACGCTTTGTGCAGGAGTTTGCAAATTTCACAAACCTTATGGAA 318 consensus_8466#1 AATGGAGCTCTCGGATGACGCTTTGTGCAGGAGTTTGCAAATTTCACAAACCTTATGGAA 336 consensus_8466#2 TCCGAA-CAATGGGGGAAGCAGTTATTCATCAGTT--CATGTTTGGCCCAGCG-ATGAAA 231 * * * * ** * ** * ** **** ** *** * * * *** ** consensus_8466#0 TGTGTTCCATCAGCCTAAGTGAACCTCTACTGAAATTTAGACCGCGGAAAGATCTCGTGG 378 consensus_8466#1 TGTGTTCCATCAGCCTAAGTGAACCTCTACTGAAATTTAGACCGCGGAAAGATCTCGTGG 396 consensus_8466#2 AAGGTCAAATCCTCGGAAAAGGTCATTTG-------TCATGTCAAAAAAAGGCCC--TGG 282 ** *** * ** * * * * * * * **** * *** consensus_8466#0 AGACTCTGCTGCATGAAATGATTCATGCATTTTTATTCATAACAAGGAGGGACAAGGATC 438 consensus_8466#1 AGACTCTGCTGCATGAAATGATTCATGCATTTTTATTCATAACAAGGAGGGACAAGGATC 456 consensus_8466#2 TGGAATTGAAACCAAATGTAGTTGAAACAATTG-ATTTATCAAAAGGATCCT-----GCC 336 * ** * * * ** * ** ** *** ** * ***** * consensus_8466#0 GTGATGACCATGGACCCAATTTCATATCGCACATGCATCG--CATCAATTCGTTGGCTGG 496 consensus_8466#1 GTGATGACCATGGACCCAATTTCATATCGCACATGCATCG--CATCAATTCGTTGGCTGG 514 consensus_8466#2 CCAACGGGTTTTGGACTGTTTTGCTTTTTCGGATTAATCAACCCTTAAAAATTTGCCTTT 396 * * * * * *** * * * ** *** * * ** *** ** consensus_8466#0 AGTAAATATTACTGTTTACCACTCATTTCATGATGAAGTTGATACATATCGCACTCACTG 556 consensus_8466#1 AGTAAATATTACTGTTTACCACTCATTTCATGATGAAGTTGATACATATCGCACTCACTG 574 consensus_8466#2 --CAAAAAAAAATTTTTACAAATT-TTTGAAAAAAAACTTTTT----------------- 436 *** * * * ***** * * *** * * ** ** * consensus_8466#0 GTGGCGTTGTACCGGTCCATGTCGCGACCGTCCACCATACTTTGGCTATGTTAAACGTTC 616 consensus_8466#1 GTGGCGTTGTACCGGTCCATGTCGCGACCGTCCACCATACTTTGGCTATGTTAA------ 628 consensus_8466#2 ------------------------------------------------------------ consensus_8466#0 TATGAATAGAGTGCCTGGTCCTAAGGATACTTGGTGGAGTCAGCATCAAGCTACTTGTAT 676 consensus_8466#1 ------------------------------------------------------------ consensus_8466#2 ------------------------------------------------------------ consensus_8466#0 AGGTAGATTTATAAAAATCAAGGAACCAGTCAAGAAAGTTCCATCTAAACGGAAAACTTC 736 consensus_8466#1 ------------------------------------------------------------ consensus_8466#2 ------------------------------------------------------------ consensus_8466#0 TCTTGAATCCAGTTCAAAAGACCAATCTACATCAAAAAAACAAATTAGGAGTGGTGATAT 796 consensus_8466#1 ------------------------------------------------------------ consensus_8466#2 ------------------------------------------------------------ consensus_8466#0 TCGAAAGTTTGTCACCATTAATGATGTGAAAGAAAATACCTCTACAGAATTCGCTAGTCA 856 consensus_8466#1 ------------------------------------------------------------ consensus_8466#2 ------------------------------------------------------------ consensus_8466#0 TCCGAACAATGGTGGAAGCAGTTATTCATCAGTTCATGTTTGGCCTAGCGATGATAAAGG 916 consensus_8466#1 ------------------------------------------------------------ consensus_8466#2 ------------------------------------------------------------ consensus_8466#0 TCATATCCTNCGAAATGGTCATTCGTCATGTCAAGATATGGCACTGGTCGAATCGAAACC 976 consensus_8466#1 ------------------------------------------------------------ consensus_8466#2 ------------------------------------------------------------ consensus_8466#0 AAATGTAGTTGAAACAATTGATTTATCAGAAGTATCCTGCCCTAACTGCTCTTGTACTGT 1036 consensus_8466#1 ------------------------------------------------------------ consensus_8466#2 ------------------------------------------------------------ consensus_8466#0 TTTGCTCTCTCGGATTAATCAACACTTAGATATTTGCCTTTCATAGAACTATTTTTACAA 1096 consensus_8466#1 ------------------------------------------------------------ consensus_8466#2 ------------------------------------------------------------ consensus_8466#0 ATTTTTGAAAATAAACTTCTT 1117 consensus_8466#1 --------------------- consensus_8466#2 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||