These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8475#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 768 fasta sequence [GAATTAGTCATATTGTCATTCTTGCTTTGTTTAAGCTGTTCAATGAAGGTATCTATCCCTAAAGTTTAGTTCAAGTAAGTGCTATTTAAAGGACCAACCATACCTACAAACAGATTACTGGATCATGAAATACTGCCAGTGTAAAATTATTAGTTTAACGTGGAAAATACGCAAGTCTCCCTACCAGGCTACCGGATCCTTGATGATATGATTCACTGTTGGTCGGATTAATGAGTACATACTCCATACATTTATTCCCTTCTAGTTAGTTTTTGTTGTTGATGCTACTACTTTTACTTCTTTTATCCTCAATTTCCTATATGGTGATACAAAATGTAACGAATTGAGCTAATATACACCTGTGCCAGTTTCCACGTAAAATATGTACTTGGTATGAGCATGAGAGGTTTATTCCTTCTAATTATACCCCACATAGACCAACTTTCAACTGGTTATGCCCCGATAAGTATAACGAATGGTAACTTTGGGATCTATTTATGAACCCATGCTGTGAATATTTCTTATCGTATAATCGCTAAATAACTAAACTATTCATATTTGTGTCCCCCTTATTATAAGCTTTATTTTGAGCTATAAACTATTGTTATATGATTTACCATTCCTG-ATTAGGCCCTGTCTATTATTTACTATCTCCCTTATTCACAGCCACATTTGATTAAATCTTGTACACATGTTATTTTCTATTTTATGGTGCGATGTGGTCAGTTTGGTTGATGTATAAACTCAGTATGCTTGAAATCCAATGAT] [+] EMBL CD078893 [GAATTAGTCATATTGTCATTCTTGCTTTGTTTAAGCTGTTCAATGAAGGTATCTATCCCTAAAGTTTAGTTCAAGTAAGTGCTATTTAAAGGACCAACCATACCTACAAACAGATTACTGGATCATGAAATACTGCCAGTGTAAAATTATTAGTTTAACGTGGAAAATACGCAAGTCTCCCTACCAGGCTACCGGATCCTTGATGATATGATTCACTGTTGGTCGGATTAATGAGTACATACTCCATACATTTATTCCCTTCTAGTTAGTTTTTGTTGTTGATGCTACTACTTTTACTTCTTTTATCCTCAATTTCCTATATGGTGATACAAAATGTAACGAATTGAGCTAATATACACCTGTGCCAGTTTCCACGTAAAATATGTACTTGGTATGAGCATGAGAGGTTTATTCCTTCTAATTATACCCCACATAGACCAACTTTCAACTGGTTATGCCCCGATAAGTATAACGAATGGTAACTTTGGGATCTATTTATGAACCCATGCTGTGAATATTTCTTATCGTATAATCGCTAAATAACTAAACTATTCATATTTGTGTCCCCCTTATTATAAGCTTTATTTTGAGCTATANACTATTGTTATATGATTTACCATTCCTG ATTAGGC ] [-] EMBL CD073352 [ CCCTTCTAGTTAGTTTTTGTTGTTGATGCTACTACTTTTACTTCTTTTATCCTCAATTTCCTATATGGTGATACAAAATGTAACGAATTGAGTTAATATACACCTGTGCCAGTTTCCACGTAAAATATGTACTTGGTATGAGCATGAGAGGTTTATTCCTTTTAATTATACCCCACATAGACCAACTTTCAACTGGTTATGCCCCGATAAGTATAACGAATGGTAACTTTGGGATCTATTTATGAACCCATGCTGTGAATATTTCTTATCGTATAATCGCTAAATAACTAAACTATTCATATTTGTGTCCCCCTTATTATAAGCTTTATTTTGAGCTATAAACTATTGTTATATGATTTACCATTCCTGAATTAGGCCCTGTCTATTATTTACTATCTCCCTTATTCACAGCCACATTTGATTAAATCTTGTACACATGTTATTTTCTATTTTATGGTGCGATGTGGTCAGTTTGGTTGATGTATAAACTCAGTATGCTTGAAATCCAATGAT] [-] EMBL CD141393 [ CTAATTATACCCCACATAGACCAACTTTCAACTGGTTATGCCCCGATAAGTATAACGAATGGTAACTTTGGGATCTATTTATGAACCCATGCTGTGAATATTTCTTATCGTATAATCGCTAAATAACTAAACTATTCATATTTGTGTCCCCCTTATTATAAGCTTTATTTTGAGCTATAAACTATTGTTATATGATTTACCATTCCT ] consensusID : consensus_8475#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 525 fasta sequence [ACATTTACACTTAACTACTTCACAATCACACAACATTCATTGATCACTCGACACGCACAACTCAATCTCATTTGATTACTCTCATTGTCAAGTGCAATATTCGTGTGTGTGTGTGTGTGTGCATTGACCAGTTGACTCACTCTTTTCAATCAATCACCTTGTAGATAAGGATGATGGTGATGACGGTGGTGATGAAGGTGGTGATGAAGGTGGTGAAGAACCCAACGAAAATAATAACGACAGTGAGTATTCCATCATTCATTTGCATCACTGTAATTTCATGCTGTTTGCATTATCTCACACACGTGTCAACTATCTGCACGGTACAACTACACACAAACACACTAATTCATACACATACAACCACACACTCACACACTTATCAATACACACACAAACATTGTGAAACACACTCATTCACTCACTCACTCACTCATTCACTCAATCTCTCACTCACTCATTCATTCACTCACTCACTCACTCAATCATCCTATCAATCAATCAATCAACCAATCAATCAATCAA] [+] EMBL CD067733 [ACATTTACACTTAACTACTTCACAATCACACAACATTCATTGATCACTCGACACGCACAACTCAATCTCATTTGATTACTCTCATTGTCAAGTGCAATATTCGTGTGTGTGTGTGTGTGTGCATTGACCAGTTGACTCACTCTTTTCAATCAATCACCTTGTAGATAAGGATGATGGTGATGACGGTGGTGATGAAGGTGGTGATGAAGGTGGTGAAGAACCCAACGAAAATAATAACGACAGTGAGTATTCCATCATTCATTTGCATCACTGTAATTTCATGCTGTTTGCATTATCTCACACACGTGTCAACTATCTGCACGGTACAACTACACACAAACACACTAATTCATACACATACAACCACACACTCACACACTTATCAATACACACACAAACATTGTGAAACACACTCATTCACTCACTCACTCACTCATTCACTCAATCTCTCACTCACTCATTCATTCACTCACTCACTCACTCAATCATCCTATCAATCAATCAATCAACCAATCAATCAATCAA] consensusID : consensus_8475#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 480 fasta sequence [ATCGTATAAACTATTCATATTCATGTCCCCCTGATTATGAGCTCTATTTTGAACTATAAACTATTGTTATATGATTTACCATTTCTGAATTATGCCCTATCTATTATTTACTATCTCTCCTATTCACAGACACATTCGGCTTAATCTTGTACAAATGTTGTTTCTTATTTTATGGTACGATGTGGTCAGTTTGATTGGTATATAAACTCAGTATGTTTGAAATATAATGATTCATACCCGCAGAGGAATGCAATGTGACAACTGCAACAAGTGGTATCAAAACACGTGCACCGGACACACACCAGCTGCATATAAAAGGTGCTGCAAGCCACTATCACGTTGGCTGTGCAAGGCATGCAGCTCTACAAAGTTTCTGCTAATTCGTGAGGCGATTGAGCTGCCGAATATAGCTAGAAAGATGCTCTCAGATAAACAGCCAGCAGCACATGAGTAGGTTTTAGTTTTCGGGAAAGTAGCGAG] [+] EMBL CD125875 [ATCGTATAAACTATTCATATTCATGTCCCCCTGATTATGAGCTCTATTTTGAACTATAAACTATTGTTATATGATTTACCATTTCTGAATTATGCCCTATCTATTATTTACTATCTCTCCTATTCACAGACACATTCGGCTTAATCTTGTACAAATGTTGTTTCTTATTTTATGGTACGATGTGGTCAGTTTGATTGGTATATAAACTCAGTATGTTTGAAATATAATGATTCATACCCGCAGAGGAATGCAATGTGACAACTGCAACAAGTGGTATCAAAACACGTGCACCGGACACACACCAGCTGCATATAAAAGGTGCTGCAAGCCACTATCACGTTGGCTGTGCAAGGCATGCAGCTCTACAAAGTTTCTGCTAATTCGTGAGGCGATTGAGCTGCCGAATATAGCTAGAAAGATGCTCTCAGATAAACAGCCAGCAGCACATGAGTAGGTTTTAGTTTTCGGGAAAGTAGCGAG] consensusID : consensus_8475#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 476 fasta sequence [GAGTATAAGCAGTAATCCGAAAGATAAGGTTTGAGGATGTTATTTAAGGAGTATAATCCAGTAAATAAATTTGGAAAGACAAAAAAGATAGGAACATGAAGAATTCAAAAGATTAGAATT-TGGGGGAACACAAAGAGTGGATGCACCTTCACCATCGCAAACGATTTTGAGCCATGTCATTCGAGGTCTCTAACCATCGGTTGTTATCATCTCGCGAATCCCAACCAGGTAGTCCACACCAACCAACATGGCTCAGTCCACTTGTCAGTGACTTCATGGATTTGTGCCACGTTTTTGTCTGGCCGCCCCTATCTTCCTTCCAACCTACTCCTAAACCTAGTGTTGAATGAATGCATTACATTTTAATGAAACAGGTTTACCTTAAGTGATTTTGTATTATTTAAATTTAATACTTCCAGAGNTTCANATTACTTGTCGATATTCAGCGAAATATCGACCCTAACCCTTGTCTGTNG] [+] EMBL CD127788 [GAGTATAAGCAGTAATCCGAAAGATAAGGTTTGAGGATGTTATTTAAGGAGTATAATCCAGTAAATAAATTTGGAAAGACAAAAAAGATAGGAACATGAAGAATTCAAAAGATTAGAATT TGGGGGAACACAAAGAGTGGATGCACCTTCACCATCGCAAACGATTTTGAGCCATGTCATTCGAGGTCTCTAACCATCGGTTGTTATCATCTCGCGAATCCCAACCA ] [+] EMBL CD198778 [ ATTAGAATTNTGGGAGAACACAAAGAGTGGATGCACCTTCGCCATTGCAAACGATTTTGAGCCATGTCATTCAAGGTCTCTACCCATCGGTTGCTATCATCTCGCGAATCCCAACCAGGTAGTCCACACCAACCAACATGGCTCAGTCCACTTGTCAGTGACTTCATGGATTTGTGCCACGTTTTTGTCTGGCCGCCCCTATCTTCCTTCCAACCTACTCCTAAACCTAGTGTTGAATGAATGCATTACATTTTAATGAAACAGGTTTACCTTAAGTGATTTTGTATTATTTAAATTTAATACTTCCAGAGNTTCANATTACTTGTCGATATTCAGCGAAATATCGACCCTAACCCTTGTCTGTNG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8475#0 GAATTAGTCATATTGTCATTCTTGCTTTGTTTAAGCTGTTCAATGAAGGTATCTATCCCT 60 consensus_8475#2 ------------------------------------------------------------ consensus_8475#3 ------------------------------------------------------------ consensus_8475#1 ------------------------------------------------------------ consensus_8475#0 AAAGTTTAGTTCAAGTAAGTGCTATTTAAAGGACCAACCATACCTACAAACAGATTACTG 120 consensus_8475#2 ------------------------------------------------------------ consensus_8475#3 ------------------------------------------------------------ consensus_8475#1 ------------------------------------------------------------ consensus_8475#0 GATCATGAAATACTGCCAGTGTAAAATTATTAGTTTAACGTGGAAAATA-CGCAAGTCTC 179 consensus_8475#2 ------------------------------------ATCGTATAAACTA-TTCA--TATT 21 consensus_8475#3 ------------------------------------------GAGTATA-AGCAGTAATC 17 consensus_8475#1 ------------ACATTTACACTTAACTACTTCACAATCACACAACATTCATTGATCACT 48 * * consensus_8475#0 CCTACCAGGCTACCGGATCC---TTGATGATATGATTCACTGTTGGTCGGATTAATGAGT 236 consensus_8475#2 CATGTC-----------CCC---CTGATTATGAGCTCTATT-----TTGAACTATAAACT 62 consensus_8475#3 CGAAAGATA-------AGGT---TTGAGGATGTTATTTAAGGA-GTATAATCCAGTAAAT 66 consensus_8475#1 CGACACGCACAACTCAATCTCATTTGATTACTCTCATTGTCAAGTGCAATATTCGTGTGT 108 * *** * * consensus_8475#0 ACATAC-TCCATACATTTATTCCCT-TCTAGTTAGTTTTTGTTGTTGATGCTACTACTTT 294 consensus_8475#2 AT-TGT-TATATG-ATTTACCATTT-CTGAATTATGCCCTATCTATTAT-TTACTATCTC 117 consensus_8475#3 AAAT-T-TGGAAAGACAAAAAAGAT-AGGAAC-ATGAAGAATTCAAAAGATTAGAATTTG 122 consensus_8475#1 GTGTGTGTGTGTGCATTGACCAGTTGACTCACTCTTTTCAATCAATCACCTTGTAGATAA 168 * * * * * * * * consensus_8475#0 TACTTCTTTTATCCTCAATTTCCTATATGGTGATACAAAATGTAACGAATTGAGCTAATA 354 consensus_8475#2 TCCTATTCACAGACACATTCGGCTTAATCTTG-TACAAA-TGTTGTTTCTTATTTTATGG 175 consensus_8475#3 GGGGAACACAAAGAGTGGATGCACCTTCACCATCGCAAACGATTTTGAGCCATGTCATTC 182 consensus_8475#1 GGATGATGGTGATGACGGTGGTGATGAAGGTGGTGATGAAGGTGGTGAAGAACCCAA--C 226 * * * consensus_8475#0 TACACCTGTGCCAGTTTCCACGTAAAATATGTACTTGGTATGAGCATGAGAGGTTTATTC 414 consensus_8475#2 TACGATGTGGTCAGTTT--GATTGGTATATAAACTCAGTATGTTTGAAATATAATGATTC 233 consensus_8475#3 GAGGTCTCTAACCATC---GGTTGTTAT---CATCTCGCGAATCCCAACCAGG-TAGTCC 235 consensus_8475#1 GAAAATAATAACGACAGT-GAGTATTCCATCATTCATTTGCATCACTGTAATTTCATGCT 285 * * * * consensus_8475#0 CTTCTAATTATACCCCACATAGACCAACTTTCAACTGGTTATGCCCCGATAAGTATAA-C 473 consensus_8475#2 ATACCCGCAGAGGAATGCAATGTGACAACTGCAACAAGTGGTATCAAAACACGTGCAC-C 292 consensus_8475#3 ACACCAACCAA--CATGGCTCAGTCCACTTGTCA---GTGACTTCATGG-ATTTGTGC-C 288 consensus_8475#1 GTTTGCATTATCTCACACACGTGTCAACTATCTGCACGGTACAACTACACACAAACACAC 345 * * * * * consensus_8475#0 GAATGGTAACTTTGGGATCTATTTATGAACCCATGCTGTGAATATTTCTTATCGTATAAT 533 consensus_8475#2 GGACACACACC-----AGCTGCATATAAAAG-GTGCTGCAAGCCACTATCA-CGTTGGCT 345 consensus_8475#3 ACGTTTTTGTCT----GGCCGCCCCT--ATCTTCCTTCCAACCTACTCCTA-AACCTAGT 341 consensus_8475#1 TAATTCATACACATACAACCACACACTCACACACTTATCAATACACACACA---AACATT 402 * * * * * consensus_8475#0 CGCTAAATAACTAAACTATTCATATTTGTGTCCCCCTTATTATAAGCTTTATTTTGAGCT 593 consensus_8475#2 GTGCAAGGCATGCAGCTCTACAAAGTT---TCTGCTAATTCGTGAGGCG---ATTGAGCT 399 consensus_8475#3 GTTGAATGAATGCA-TTACATTTTAATGAAACAGGTTTACCTTAAGTGATTTTGTATTAT 400 consensus_8475#1 GTGAAACACACTCATTCACTCACTCAC---TCACTCATTCACTCAATCTCTCACTCACTC 459 ** * * * * * * consensus_8475#0 ATAAACT--ATTGTTATATGATTTACCATTCCTGATTAGGCC-CTGTCTATTATTTACTA 650 consensus_8475#2 GCCGAAT--ATAGCTAGAAAGATGCTCTCAGATAAACAGCCAGCAGCACATGAGTAGGTT 457 consensus_8475#3 TTAAATTTAATACTTCCAGAGNTTCANATTACTTGTCGATATTCAGCGAAATATCGACCC 460 consensus_8475#1 ATTCATTC-ACTCACTCACTCACTCAATCATCCTATCAAT---CAATCAATCAACCAATC 515 * * * * * * * consensus_8475#0 TCTCCCTTATTCACAGCCACATTTGATTAAATCTTGTACACATGTTATTTTCTATTTTAT 710 consensus_8475#2 TTAGTTTTCGGGAAAGTAGCGAG------------------------------------- 480 consensus_8475#3 TAACCCTTGTCTGTNG-------------------------------------------- 476 consensus_8475#1 AATCAATCAA-------------------------------------------------- 525 * consensus_8475#0 GGTGCGATGTGGTCAGTTTGGTTGATGTATAAACTCAGTATGCTTGAAATCCAATGAT 768 consensus_8475#2 ---------------------------------------------------------- consensus_8475#3 ---------------------------------------------------------- consensus_8475#1 ---------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||