cluster # 8488

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8488 cluster # 8488 Sequences # 7 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8488#0 length = 442 sequences # 2
consensus_8488#1 length = 340 sequences # 1

consensus_8488#2 length = 288 sequences # 2
consensus_8488#3 length = 201 sequences # 1
consensus_8488#4 length = 195 sequences # 1

consensusID : consensus_8488#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 442
fasta sequence

                              [TAAATATATTTTCTTTCTTTGATAGATCTGAAATCTTTGCATAACAAAGTCAGCTATACCAACATATATATATATATACACTCACAAAAGAGACTTACTTACTTACGCCTGTTACCCCTCGTGGAGGAGCATAGGCCTCTCACACAAAAGAGAACAATAATAATAATCTAAATAATAATGGAAACCATAAACAAAAAAATGAAAGGAATATAAATGAGGGAACAATAAAAACCAATAGCAGGAGTAGTAATAGTAGATGGGTAAGATGCTGTATCATCATCATTATCCAGTATCATAATTCATCTTTCATATATTTATTTAAATGTAGTTTATCATTAGTCATTGGTGATGATGATGATGAGATAGTATATTGTTTTTCATAAATAACTGGCCATTCAGTTAATGATTGACAAGTAGATGAATCTGTATAATAATGATATGG]

[+] EMBL CD077149             [TAAATATATTTTCTTTCTTTGATAGATCTGAAATCTTTGCATAACAAAGTCAGCTATACCAACATATATATATATATACACTCACAAAAGAGACTTACTTACTTACGCCTGTTACCCCTCGTGGAGGAGCATAGGCCTCTCACACAAAAGAGAACAATAATAATAATCTAAATAATAATGGAAACCATAAACAAAAAAATGAAAGGAATATAAATGAGGGAACAATAAAAACCAATAGCAGGAGTAGTAATAGTAGATGGGTAAGATGCTGTATCATCATCATTATCCAGTATCATAATTCATCTTTCATATATTTATTTAAATGTAGTTTATCATTAGTCATTGGTGATGATGATGATGAGATAGTATATTGTTTTTCATAAATAACTGGCCATTCAGTTAATGATTGACAAGTAGATGAATCTGTATAATAATGATATGG]
[+] EMBL CD077134             [TAAATATATTTTCTTTCTTTGATAGATCTGAAATCTTTGCATAACAAAGTCAGCTATACCAACATATATATATATATACACTCACAAAAGAGACTTACTTACTTACGCCTGTTACCCCTCGTGGAGGAGCATAGGCCTCTCACACAAAAGAGAACAATAATAATAATCTAAATAATAATGGAAACCATAAACAAAAAAATGAAAGGAATATAAATGAGGGAACAATAAAAACCAATAGCAGGAGTAGTAATAGTAGATGGGTAAGATGCTGTATCATCATCATTATCCAGTATCATA                                                                                                                                                 ]




>consensus_8488#0
TAAATATATTTTCTTTCTTTGATAGATCTGAAATCTTTGCATAACAAAGTCAGCTATACC
AACATATATATATATATACACTCACAAAAGAGACTTACTTACTTACGCCTGTTACCCCTC
GTGGAGGAGCATAGGCCTCTCACACAAAAGAGAACAATAATAATAATCTAAATAATAATG
GAAACCATAAACAAAAAAATGAAAGGAATATAAATGAGGGAACAATAAAAACCAATAGCA
GGAGTAGTAATAGTAGATGGGTAAGATGCTGTATCATCATCATTATCCAGTATCATAATT
CATCTTTCATATATTTATTTAAATGTAGTTTATCATTAGTCATTGGTGATGATGATGATG
AGATAGTATATTGTTTTTCATAAATAACTGGCCATTCAGTTAATGATTGACAAGTAGATG
AATCTGTATAATAATGATATGG

consensusID : consensus_8488#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 340
fasta sequence

                              [CAGCATCATGCGCGATGTTTGCCCGAAGCTGAAGGATATAATGAATGCCAAACTTTCCGATCCGAAACGCATAATGGGTACCCAAGGATCTCGACGCCGCCCAAGACGAAGTGAAGACCCAGAACGAGATAATGATTGGGAAGGGTGGGGAAAATATCAAAAAAATACGGTCACAGTATAACGTCAAGCTGAATATTCCCGACAGCAGAGGCCCTGAACGGATAATGACTATCGAAGGTGACCTGCAGGCCATCTGCAGCATCATGCGCGATGTTTGCCCGAAGCTGAAGGATATAATGAATGCCAAACTTTCCGATCCGAAACGCATAATGGGTACCCA]

[+] EMBL CD095083             [CAGCATCATGCGCGATGTTTGCCCGAAGCTGAAGGATATAATGAATGCCAAACTTTCCGATCCGAAACGCATAATGGGTACCCAAGGATCTCGACGCCGCCCAAGACGAAGTGAAGACCCAGAACGAGATAATGATTGGGAAGGGTGGGGAAAATATCAAAAAAATACGGTCACAGTATAACGTCAAGCTGAATATTCCCGACAGCAGAGGCCCTGAACGGATAATGACTATCGAAGGTGACCTGCAGGCCATCTGCAGCATCATGCGCGATGTTTGCCCGAAGCTGAAGGATATAATGAATGCCAAACTTTCCGATCCGAAACGCATAATGGGTACCCA]




>consensus_8488#1
CAGCATCATGCGCGATGTTTGCCCGAAGCTGAAGGATATAATGAATGCCAAACTTTCCGA
TCCGAAACGCATAATGGGTACCCAAGGATCTCGACGCCGCCCAAGACGAAGTGAAGACCC
AGAACGAGATAATGATTGGGAAGGGTGGGGAAAATATCAAAAAAATACGGTCACAGTATA
ACGTCAAGCTGAATATTCCCGACAGCAGAGGCCCTGAACGGATAATGACTATCGAAGGTG
ACCTGCAGGCCATCTGCAGCATCATGCGCGATGTTTGCCCGAAGCTGAAGGATATAATGA
ATGCCAAACTTTCCGATCCGAAACGCATAATGGGTACCCA

consensusID : consensus_8488#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 288
fasta sequence

                              [ATCGGAAAGTTTGGCATTCATAGTATCCTTCAGCTTCGGGCGAACATCGCGCATGATGCTGCAGATGGCCTGCAGGTCACCTTCGATAGTCATTATCCTGTGACCGTATTTTTTGGATATTTTCCCCCACCCTTGCCAATCATAATCCCTGCAGCCCTCCCAGGAATAAGAAATCTGATGGAAACATCGGTTAGATCAACGGAAGAACGCTGGAATTTCGACGGAGGACCATCTTGGTTGTCTCCTGAGTTGTCTCGTTTCATGCGCTAAGCTGAATGGCTACCAGGC]

[-] EMBL CD097893             [ATCGGAAAGTTTGGCATTCATAGTATCCTTCAGCTTCGGGCGAACATCGCGCATGATGCTGCAGATGGCCTGCAGGTCACCTTCGATAGTCATTATCCTGTGACCGTATTTTTTGGATATTTTCCCCCACCCTTGCCAATCATAATCCCTGCAGCCCTCCCAGGAATAAGAAATCTGATGGAAACATCGGTTAGATCAACGGAAGAACGCTGGAATTTCGACGGAGGACCATCTTGGTTGTCTCCTGAGTTGTCTCGTTTCATGCGCTAAGCTGAATGGCTACCAGGC]
[+] EMBL CD159825             [                                          AACATCGCGCATGATGCTGCAGATGGCCTGCAGGTCACCTTCGATAGTCATTATCCTGTGACCGTATTTTTTTGATATTTT CCCCACCCTTCCCAATCATTATCCCTGCAGCCCTCCCAGGAATAAGAAATCTGATGGAAACAT                                                                                                     ]




>consensus_8488#2
ATCGGAAAGTTTGGCATTCATAGTATCCTTCAGCTTCGGGCGAACATCGCGCATGATGCT
GCAGATGGCCTGCAGGTCACCTTCGATAGTCATTATCCTGTGACCGTATTTTTTGGATAT
TTTCCCCCACCCTTGCCAATCATAATCCCTGCAGCCCTCCCAGGAATAAGAAATCTGATG
GAAACATCGGTTAGATCAACGGAAGAACGCTGGAATTTCGACGGAGGACCATCTTGGTTG
TCTCCTGAGTTGTCTCGTTTCATGCGCTAAGCTGAATGGCTACCAGGC

consensusID : consensus_8488#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 201
fasta sequence

                              [AGTCGGCGCGGGAATTCGATTACCGACTGGACAGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACAGCGACCCTCCTACTCGTTGCCGTCACTCCATGCCTAGACCAAGTGCAGCTTGCCCTCACACAGCATATGCCTAGCTTACAGCAACGGTCCGGTATAGGTCCAACGCTCGAGCGCC]

[+] EMBL CD183713             [AGTCGGCGCGGGAATTCGATTACCGACTGGACAGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACAGCGACCCTCCTACTCGTTGCCGTCACTCCATGCCTAGACCAAGTGCAGCTTGCCCTCACACAGCATATGCCTAGCTTACAGCAACGGTCCGGTATAGGTCCAACGCTCGAGCGCC]




>consensus_8488#3
AGTCGGCGCGGGAATTCGATTACCGACTGGACAGCGCCTGTGGTTGCTTCACCTAGGCTC
ACGCCTGAGGCTTCCCGCTAGCCACAGCGACCCTCCTACTCGTTGCCGTCACTCCATGCC
TAGACCAAGTGCAGCTTGCCCTCACACAGCATATGCCTAGCTTACAGCAACGGTCCGGTA
TAGGTCCAACGCTCGAGCGCC

consensusID : consensus_8488#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 195
fasta sequence

                              [TCCCTATGGACATGCGTACGCGGACAATGCCCTACTACCACCAAGATCTGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACTGCGACCCTCCTACTCGTTGCCGTCACCCCATGCCTAGACCAAGTGCAGCTTGCCCTCACACAGCATAGGCCTAGCTTACAGCAACGGTCCGGT]

[+] EMBL CD061511             [TCCCTATGGACATGCGTACGCGGACAATGCCCTACTACCACCAAGATCTGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACTGCGACCCTCCTACTCGTTGCCGTCACCCCATGCCTAGACCAAGTGCAGCTTGCCCTCACACAGCATAGGCCTAGCTTACAGCAACGGTCCGGT]




>consensus_8488#4
TCCCTATGGACATGCGTACGCGGACAATGCCCTACTACCACCAAGATCTGCGCCTGTGGT
TGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACTGCGACCCTCCTACTCGTT
GCCGTCACCCCATGCCTAGACCAAGTGCAGCTTGCCCTCACACAGCATAGGCCTAGCTTA
CAGCAACGGTCCGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8488#3      --------------AGTCGGCGCGGGAATT---CGATTACCGACTGGA-CAGCGCCTGTG 42
consensus_8488#4      --TCCCTATGGACATGCGTACGCGGACAATGCCCTACTACCACCAAGATCTGCGCCTGTG 58
consensus_8488#2      --ATCGGAAAGTTTGGCATTCATAG-TATCCTTCAGCTTCGGGCGAACATCGCGCATGAT 57
consensus_8488#0      TAAATATATTTTCTTTCTTTGATAGATCTGAAATCTTTGCATAACAAAGTCAGCTATACC 60
consensus_8488#1      -CAGCATCATGCGCGATGTTTGCCCGAAGCTGAAGGATATAATGAATGCCAAACTTTCCG 59
                                                           *                  *   

consensus_8488#3      GTTGCT--T-CACC-TA-G-GCTCACG---CCTGAGGCTTCCCG-CTAGCCACAGCGACC 92
consensus_8488#4      GTTGCT--T-CACC-TA-G-GCTCACG---CCTGAGGCTTCCCG-CTAGCCACTGCGACC 108
consensus_8488#2      GCTGCAGAT-GGCC-TGCA-GGTCACC---TTCGATAGTCATTATCCTGTGACCGT-ATT 110
consensus_8488#0      AACATATATATATA-TATACACTCACA---AAAGAGACTTACTTACTTACGCCTGTTACC 116
consensus_8488#1      ATCCGAAACGCATAATGGGTACCCAAGGATCTCGACGCCGCCCAAGACGAAGTGAAGACC 119
                                     *       **        **                      *  

consensus_8488#3      CTCCT-----ACTCGTTGCCGTCACTCCATGCCTAGACCAAGTGCAGCTTGCCCTCACAC 147
consensus_8488#4      CTCCT-----ACTCGTTGCCGTCACCCCATGCCTAGACCAAGTGCAGCTTGCCCTCACAC 163
consensus_8488#2      TTTTG-----GATATTTTCCCCCACCCT-TGCCAATCATAATCCCTGCAGCCCTCCCAGG 164
consensus_8488#0      CCTCGTGGAGGAGCATAGGCCTCTCACACAAAAGAGAACAATAATAATAATCTAAATAAT 176
consensus_8488#1      CAGAACGAGATAATGATTGGGAAGGGTGGGGAAAATATCAAAAAAATACGGTCACAGTAT 179
                                                        *    **                   

consensus_8488#3      AGCATATGCCTAGCTTACAGCAACGGTCCGG----TATA-GGTCCA--ACGCTCGAGCGC 200
consensus_8488#4      AGCATAGGCCTAGCTTACAGCAACGGTCCGG----T------------------------ 195
consensus_8488#2      AATAAGAAATCTGATGGAAACATCGGTTAGA----TCAACGGAAGA--ACGCTGGAATTT 218
consensus_8488#0      AATGGAAACCATAAACAAAAAAATGAAAGGAATA-TAAATGAGGGA--ACAATAAAAACC 233
consensus_8488#1      AACGTCAAGCTGAATATTCCCGACAGCAGAGGCCCTGAACGGATAATGACTATCGAAGGT 239
                      *                                  *                        

consensus_8488#3      C----------------------------------------------------------- 201
consensus_8488#4      ------------------------------------------------------------
consensus_8488#2      CGACGGAGGACCA-TCTTGGTTGTCTCCTGAGTTGTCTCGTTTCATGCGCTAAGCTGAAT 277
consensus_8488#0      AATAGCAGGAGTAGTAATAGTAGATGGGTAAGATGCTGTATCATCATCATTATCCAGTAT 293
consensus_8488#1      GACCTGCAGGCCATCTGCAGC-ATCATGCGCGATGTTTGCCCGAAGCTGAAGGATATAAT 298
                                                                                  

consensus_8488#3      ------------------------------------------------------------
consensus_8488#4      ------------------------------------------------------------
consensus_8488#2      GGCTACCAGGC------------------------------------------------- 288
consensus_8488#0      CATAATTCATCTTTCATATATTTATTTAAATGTAGTTTATCATTAGTCATTGGTGATGAT 353
consensus_8488#1      GAATGCCAAACTTTCCGATCCGAAACGCATAATGGGTACCCA------------------ 340
                                                                                  

consensus_8488#3      ------------------------------------------------------------
consensus_8488#4      ------------------------------------------------------------
consensus_8488#2      ------------------------------------------------------------
consensus_8488#0      GATGATGAGATAGTATATTGTTTTTCATAAATAACTGGCCATTCAGTTAATGATTGACAA 413
consensus_8488#1      ------------------------------------------------------------
                                                                                  

consensus_8488#3      -----------------------------
consensus_8488#4      -----------------------------
consensus_8488#2      -----------------------------
consensus_8488#0      GTAGATGAATCTGTATAATAATGATATGG 442
consensus_8488#1      -----------------------------