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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8493#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 714 fasta sequence
[CACATAGCGTGACGCTGTTAACCGCTCATGAATACACTGTTATACACACACCTATCGTACTTCATTGCCTGTGGTCATGATAATTGGATCGCAAAATAACTTTCATCTATATTTATAGACTGTGGTAACATTTCCATTATATTCTACGTTTGGCTATATTACTGGAGCCATATCAACCTCACTGGAATTATTAATTATCTATAATTGTGGATTCTGGTACCAAACGTAGCAGAACACTCACCAATCAGCTGATTTAAGTAACGTCCCCTAACTTTTATTTGTGTTCATAACTTATAAATTGTAGTATAGGTAACATTAAACCATACTGCCGACCTTTGAACGAATCTTAAATGACCTTGAGAAATATTAGCCAATCAAACGATA-GTTAGTATACAGTAAAAATATATTATACAAAACCAAAGAATTAAAGTGGAAACAGTTCTTTTACATGGGTCAAAAACTTCTCAAGGTCAGATATAGGTTCA-GAAGTTCTAAACTCATAGTGCATACGGTACAGGAACACATCCATATGGCTTTAT-AGTAGTCGACATCTGAAACCATGACAAGGTCTCAAAAATTCTTTTAGCCCCGACCACATAGCTTCAATAATGTTAGTATATTGGTATGGTTTATTGGTTAGGGTTAGAGTTAAGGTTTAGGTGTAGGGTTTAGGGTTATGGGTGAGACTATAAGTTATGGACAACATTTGAGCGA]
[+] EMBL AI976273 [CACATAGCGTGACGCTGTTAACCGCTCATGAATACACTGTTATACACACACCTATCGTACTTCATTGCCTGTGGTCATGATAATTGGATCGCAAAATAACTTTCATCTATATTTATAGACTGTGGTAACATTTCCATTATATTCTACGTTTGGCTATATTACTGGAGCCATATCAACCTCACTGGAATTATTAATTATCTATAATTGTGGATTCTGGTACCAAACGTAGCAGAACACTCACCAATCAGCTGATTTAAGTAACGTCCCCTAACTTTTATTTGTGTTCATAACTTATAAATTGTAGTATAGGTAACATTAAACCATACTGCCGACCTTTGAACGAATCTTAAATGACCTTGAGAAATATTAGCCAATCAAACGATA GTTAGTATACAGTAAAAATATATTATACAAAACCAAAGAATTAAAGTGGAAACAGTTCTTTTACATGGGTCAAAAACTTCTCAAGGTCAGATATAGGTTCA GAAGTTCTAAACTCATAGTGCATACGGTACAGGAACACATCCATATGGCTTTAT AGTAGTCGACATCTGAAACCATGACAAGGTCTCAAAAATTCTTTTAGCCCCGACCACATAGCTTC ]
[+] EMBL CD195272 [ aggtaagacGGTACGATTAAACTATACTGCCGACCTTTGAACGAATCCTAAATGACCTTGAGAAATATTAGCCAATCAGAAAACA GTTAGTATACAGTAAAAATATGTTATACAAAACCAAAGAATTAAAGTGGAAACACTTCTTTTCCATGGATCAAAAACCTCTCAAGGTCAGATATAGGTTCA GAAGTTCTAAAATCATAGTGCATACGGTACAGGAACACATCCATATGGCTCCATAAGTAGTCGACCTATGAAACCATGATAAGGTCTCAAAAATTCTTTCAGCCTCGACCACATAGCTTCAATAATGTTAGTATATTGGTATGGTTTATTGGTTAGGGTTAGAGTTAAGGTTTAGGTGTAGGGTTTAGGGTTATGGGTGAGACTATAAGTTATGGACAACATTTGAGCGA]
[+] EMBL CD068495 [ tAATATTAGCCAATC ACGATANGTTAGTATACAGTAAAAATATATTATACAAAACCAAAGAATTAAAGTGGAAACAGTTCTTTTACATGGGTCAAAAACTTCTCAAGGTCAGATATAGGTTCA GAAGTTCTAAACTCATAGTGCATACGGTACAGGAACACATCCATATGGCTTTAT AGTAGTCGACATCTGAAACCATGACAAGGTCTCAAAAATTCTTTTAGCCCCGACCACATAGCTTCAATAATGTTAGTATATTGGTATGGTTTACGGGTTAGGGTTAGAGTT ]
[+] EMBL CD076912 [ AAATATATTATTCAAAACTAAAGAATTAAAGTGGAAACACTTCTTTTACATGGGTCAAAAACTTCTCATGGTCAGATATAGGTTCACGAAGTTCTAAAATCATACTGCA ]
consensusID : consensus_8493#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 399 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTAGAATGAATAGGTTTTATTCATCTCGAATTCAAACACGACTATATTACAGTGAGTTGAATTGAGAGGTGTGTAGAAAAATAGGACAGTGGAGAGTGTGACACAAACAAATTAGAATG-ATCCACAACTCAACTGGTGCCTCAGTAACCGCCTCCATAATGGCTGGGTTTGTAAGTGCCACCTTTGCCGCCTTTGCCACCTTTGCCACCACCCTTACCCTTACCGCTACCACCGCCATAACCCTTTCCATAATTGTTGCCTTTACTACCACCTTTTCCAAAGCCGTTGCCACCGTTACCATAATCACCGCCATGTTAACAAAGGGTTACTGTTTAAAGATGTTATGGCTTCCATAAAACAGAAGGAAGAAGAAGAA]
[+] EMBL AA756912 [TTTTTTTTTTTTTTTTTTTTTTTTTAGAATGAATAGGTTTTATTCATCTCGAATTCAAACACGACTATATTACAGTGAGTTGAATTGAGAGGTGTGTAGAAAAATAGGACAGTGGAGAGTGTGACACAAACAAATTAGAATGAATCCACAAC ]
[+] EMBL AI975155 [ AGGTTTTATTCATCTCGAATTCAAACACGACTATATTACAGTGAGTTGAATTGAGAGGTGTGTAGAAAAATAGGACAGTGGAGAGTGTGACACAAACAAATTAGAATG ATCCACAACTCAACTGGTGCCTCAGTAACCGCCTCCATAATGGCTGGGTTTGTAAGTGCCACCTTTGCCGCCTTTGCCACCTTTGCCACCACCCTTACCCTTACCGCTACCACCGCCATAACCCTTTCCATAATTGTTGCCTTTACTACCACCTTTTCCAAAGCCGTTGCCACCGTTACCATAATCACCGCCATGTTAACAAAGGGTTACTGTTTAAAGATGTTATGGCTTCCATAAAACAGAAGGAAGAAGAAGAA]
[+] EMBL AW017239 [ AGGTTTTATTCATCTCGAATTCAAACACGACTATATTACAGTGAGTTGAATTGAGAGGTGTGTAGAAAAATATGACAGTGGAGAGTGTGACACAAACAAATTAGAATG ATCCACAACTCAACTGGTGCCTCAGTAACCGCCTCCATAATGGCTGGGTTTGTAAGTGCCACCTTTGCCGCCTTTGCCACCTTTGCCACCACCCTTACCCTTACCGCTACCACCGCCATAACCCTTTCCATAATTGTTGCCTTTACTACCACCTTTTCCAAAGCCGTTGCCACCGTTACCATAATCACCGCCATGTAAACAAAGGGTTACTGTTTAAAGATGTTATGGCTTCCATAAAACAGAAGGAAGAAGAAG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8493#0 CACATAGCGTGACGCTGTTAACCGCTCATGAATACACTGTTATACACACACCTATCGTAC 60
consensus_8493#1 ------------------------------------------------------------
consensus_8493#0 TTCATTGCCTGTGGTCATGATAATTGGATCGCAAAATAACTTTCATCTATATTTATAGAC 120
consensus_8493#1 ------------------------------------------------------------
consensus_8493#0 TGTGGTAACATTTCCATTATATTCTACGTTTGGCTATATTACTGGAGCCATATCAACCTC 180
consensus_8493#1 ------------------------------------------------------------
consensus_8493#0 ACTGGAATTATTAATTATCTATAATTGTGGATTCTGGTACCAAACGTAGCAGAACACTCA 240
consensus_8493#1 ------------------------------------------------------------
consensus_8493#0 CCAATCAGCTGATTTAAGTAACGTCCCCTAACTTTTATTTGTGTTCATAACTTATAAATT 300
consensus_8493#1 ---------------------TTTTTTTTTTTTTTTTTTTTTTTTTAGAATGAATAGGTT 39
* * **** *** * ** * ** *** **
consensus_8493#0 GTAGTATAGGTAACATTAAACCATACTGCCGACCTTTGAACGAATCTTAAATGACCTTGA 360
consensus_8493#1 TTATT-CATCTCGAATTCAAACAC---GACTATATTACAGTGAGT-TGAATTGA----GA 90
** * * * *** ** ** * * * ** * ** * * ** *** **
consensus_8493#0 GAAATATTAGCCAATCAAACGATAGTTAGTATACAGTAAAAATATATTATACAAAACCAA 420
consensus_8493#1 GGTGTGTAGAAAAATAGGACAGTGG--AGAGTGTGACACAAACAAATTAGAATGATCCAC 148
* * * *** ** * * ** * * *** * **** * * ***
consensus_8493#0 AGAATTAAAGTGGAAACAGTTCTTTTACATGGGTCAAAAACTTCTCAAGGTCAGATATAG 480
consensus_8493#1 A--ACTCAACTGG------------TGCCTCAGTAACCGCCTCCATAATGGC-----TGG 189
* * * ** *** * * * ** * ** * ** * * * *
consensus_8493#0 GTTCAGAAGTTCTAAACTCATAGTGCATACGGTACAGGAACACATCCATATGGCTTTATA 540
consensus_8493#1 GTTTGTAAGTGCCACCTTTGCCGCCTTTGCCACCTTTGCCACCACCCTTAC--CCTTACC 247
*** **** * * * * * * * ** ** ** * ***
consensus_8493#0 GTAGTCGACATCTGAAACCATGACAAGGTCTCAAAAATTCTTTTAGCCCCGACCACATAG 600
consensus_8493#1 GCTACCACCGCCATAACCCTTTCCATAATTGTTGCCTTTACTACCACCTTTTCCA-AAGC 306
* * * * ** ** * ** * ** * ** *** *
consensus_8493#0 CTTCAATAATGTTAGTATATTGGTATGGTTTATTGGTTAGGGTTAGAGTTAAGGTTTAGG 660
consensus_8493#1 CGTTGCCACCGTTACCATAATCAC-CGCCATGTTAACAAAGG-----GTTACTGTTTAA- 359
* * * **** *** * * * ** * ** **** *****
consensus_8493#0 TGTAGGGTTTAGGGTTATGGGTGAGACTATAAGTTATGGACAACATTTGAGCGA 714
consensus_8493#1 ---AGATGTTATGGCT-TCCATAAAACAGAAGGAAGAAGAAGAA---------- 399
** *** ** * * * * ** * * ** *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||