These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8499#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 973 fasta sequence [CCANAAACATAATCTTAATCATCAACAAGCTGAGATGTTGCATGAAGAAGACAAACTACATTGACACCAACAATCAACGAAAGAAGGTATAGCACAAACACATGAATCAACTAAATAAGAGGGAATGAAATGCACATTATCCCTCAACAATAAAGGATAAT-CAGGAGAATCAAGCACACTTTCGGGCGACTTCACTGACACACTGGTCGCACTATCCACAACACACACACTTTCCTTCACCGTCTGCACACAGGCTTCCAATGTTTGGATGGGTTTCGGTGGCTGCTGGACTGGAACAACTGGTGCATGTATCTCACTCCAAGAATCCACCATGCACAATTGGACAGGTTTGGCTTGTGACGTCGCATCGGTGCGTTTCAACGACAAATGGGCAGCACCGTCGAGTAGAGATTTGTGTGGCTCGGTCTGTGCACCCACGTCGGACGAGGAGACTGGTACTGTGTCGATTTGTTGGTCGACAGTGGAACGTTTCACGAACTGTGTGGCTTCCACTAGAGATGTTTTGCGAACAGGTTCAGGTGTCGGTAACTCTAATGAGGCGGTCTCGGTGATGAGAGGAGCTTTGACTTGAACGGTGCGTTTCGAGACAATCTCATGCTGACTGGATTCCACGATGTGTGTGGTGACGGAGGTCGCCTGTGTGGCAGTCTCAGTCAGATGACGAGGTGGTGGCTGTTGGACAGGCGACTCTGCGTAGGAGGCACTCACTGACATCATATGATCAGGTTTCACTGTCTTCAACTCTCTGTGATCCTCACTGGTCACAACTGGTCGTTCGGTTTGAGTCACCTGTACTTCTCGTTCTGCTACTTCCACTGCTTCCGTCACTGTGTGGCTGCTGGTCTGTTGCACCTGGTAGCCGGAGCTCATGACATCATATGATCAGGTTTCACTGTCTTCAACTCTCTGTGATCCTCACTGGTCACAACTGGTCGTTCGGTTTGAGTCACCT] [+] EMBL CD128989 [CCANAAACATAATCTTAATCATCAACAAGCTGAGATGTTGCATGAAGAAGACAAACTACATTGACACCAACAATCAACGAAAGAAGGTATAGCACAAACACATGAATCAACTAAATAAGAGGGAATGAAATGCACATTATCCCTCAACAATAAAGGATAAT CAGGAGAATCAAGCACACTTTCGGGCGACTTCACTGACACACTGGTCGCACTATCCACAACACACACACTTTCCTTCACCGTCTGCACACAGGCTTCCAATGTTTGGATGGGTTTCGGTGGCTGCTGGACTGGAACAACTGGTGCATGTATCTCACTCCAAGAATCCACCATGCACAATTGGACAGGTTTGGCTTGTGACGTCGCATCGGTGCGTTTCAACGACAAATGGGCAGCACCGTCGAGTAGAGATTTGTGTGGCTCGGTCTGTGCACCCACGTCGGACGAGGAGACTGGTACTGTGTCGATTTGTTGGTCGACAGTGGAACGTTTCACGAACTGTGTGGCTTCCACTAAAGATGTTTTGCGAACAGGTTCAGGTGTCGGTAACTCTAATGAGGCGGTCTCGGTGATGAGAGGAGCTTTGACTTGAACGGTGCGTTTCGAGACAATCTCATGCTGACTGG ] [+] EMBL CD128777 [ NAAAC TAAAC CAA NATCAACAAGCTGAGA GTTG ATGAAGAAGACAAACTACATTGACACCAACAATCAACGAAAGAAGGTATAGCACAAACACATGAATCAACTAAATAAGAGGGAATGAAATGCACATTATCCCTCAACAATAAAGGATAAT CAGGAGAATCAAGCACACTTTCGGGCGACTTCACTGACACACTGGTCGCACTATCCACAACACACACACTTTCCTTCACCGTCTGCACACAGGCTTCCAATGTTTGGATGGGTTTCGGTGGCTGCTGGACTGGAACAACTGGTGCATGTATCTCACTCCAAGAATCCACCATGCACAATTGGACAGGTTTGGCTTGTGACGTCGCATCGGTGCGTTTCAACGACAAATGGGCAGCACCGTCGAGTAGAGATTTGTGTGGCTCGGTCTGTGCACCCACGTCGGACGAGGAGACTGGTACTGTGTCGATTTGTTGGTCGACAGTGGAACGTTTCACGAACTGTGTGGCTTCCACTAGAGATGTTTTGCGAACAGGTTCAGGTGTCGGTAACTCTAATG ] [+] EMBL CD061727 [ AGAGGGAATGAAATGCACATTATCCCTCAACAATAAAGGATAAT CAGGAGAATCAAGCACACTTTCGGGCGACTTCACTGACACACTGGTCGCACTATCCACAACACACACACTTTCCTTCACCGTCTGCACACAGGCTTCCAATGTTTAGATGGGTTTCGGTGGCTGCTGGACTGGAACAACTGGTGCATGTATCTCACTCCAAGAATCCACCATGCACAATTGGACAGGTTTGGCTTGTGACGTCGCATCGGTGCGTTTCAACGACAAATGGGCAGCACCGTCGAGTAGAGATTTGTGTGGCTCGGTCTGTGCACCCACGTCGGACGAGGAGACTGGTACTGTGTCGATTTGTTGGTCGACAGTGGAACGTTTCACGAACTGTGTGGCTTCCACTAGAGATGTTTTGCGAACAGGTTCAGGTGTCGGTAACTCTAATGAGGCGGTCTCGGTGATGAGCGGAGCTTTGACTTGAACGGTGCGTCTCGAGACAATCTC ] [+] EMBL CD062403 [ tatGGATAATCCCTGAGAGTCAAGCACACTTTCGGGCGACTTCACTGACACACTGGTCGCACTATCCACAACACACACACTTTCCTTCACCGTCTGCACACAGGCTTCCAATGTTTGGATGGGTTTCGGTGGCTGCTGGACTGGAACAACTGGTGCATGTATCTCACTCCAAGAATCCACCATGCACAATTGGACAGGTTTGGCTTGTGACGTCGCATCGGTGCGTTTCAACGACAAATGGGCAGCACCGTCGAGTAGAGATTTGTGTGGCTCGGTCTGTGCACCCACGTCGGACGAGGAGACTGGTACTGTGTCGATTTGTTGGTCGACAGTGGAACGTTTCACGAACTGTGTGGCTTCCACTAGAGATGTTTTGCGAACAGGTTCAGGTGTCGGTAACTCTAATGAGGCGGTCTCGGTGATGAGAGGAGCTTTGACTTGAACGGTGCGTTTCGAGACAATCTC ] [-] EMBL CD194870 [ GTCTGTGCACCCACGTCGGACGAGGAGACTGGTACTGTGTCGATNTGTTGGTCGACAGTGAAACGTTTCACGAACTGTGTGGCTTCCACTAGAGATGTTTTGCGAACAGGTTTAGGTGTCGGTAACTCTAATGAGGCGGTCTCGGTGATGAGAGGAGCTTTGACTTGAACGGTGCGTTTCGAGACAATCTCATGCTGACTGGATTCCACGATGTGTGTGGTGACGGAGGTCGCCTGTGTGGCAGTCTCAGTCAGATGACGAGGTGGTGGCTGTTGGACAGGCGACTCTGCGTAGGAGGCACTCACTGACATCATATGATCAGGTTTCACTGTCTTCAACTCTCTGTGATCCTCACTGGTCACAACTGGTCGTTCGGTTTGAGTCACCTGTACTTCTCGTTCTGCTACTTCCACTGCTTCCGTCACTGTGTGGCTGCTGGTCTGTTGCACCTGGTAGCCGGAGCTCATGACATCATATGATCAGGTTTCACTGTCTTCAACTCTCTGTGATCCTCACTGGTCACAACTGGTCGTTCGGTTTGAGTCACCT] consensusID : consensus_8499#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [ACAGGAGGAGTGAAATTGATGCCCCATGTCCACTAATTTAACTTTAAACCAACTTTGATTCTCTGAGGATGAGGGAGTTAAAGTACTCAATTGATCATAAAGGTTTTCAAATTGGGCGCTGATTGTCAATTCATAAATTATATATCAGAGGAGGTTTTGTGGAGAATTTATTATTTTCACAGTCGAAATCATGAGTCAATTGAAGCTAGACCACCATCGAAAACCTGGAAGCACTGGACGGCCGTTTACTCCTATTATGGGACTCCTCAGCAGTGCGCATCCACGAATCCGCTCTCGCGAGCGAGATTCGAACCCAGGACCTACCAGTCCTGAGCCGAAGCCCTTAATCGACAGACCACTGAGCTGGCATCCAACGGTGTTAATGTCTAACTTCAACCAATCCACGATTTTGAGCGACCGTTCACCAATTGTCTTCAGTGACTTGAAACGTTTTAAAATATAATATTTAACAAACCATAAGAAATTATGCTCTAACTACAAAAGCTTGAAAAAACCGCGTTAAGCATCGTATACTTACTTACTTACGCTTGTTACCCCTCGTGTAGAAGTATAGGTCACTTATCAAGACACTCTGTCGAACTCTATCCTGGGCAATCCTTTCCAG] [+] EMBL CD086206 [ACAGGAGGAGTGAAATTGATGCCCCATGTCCACTAATTTAACTTTAAACCAACTTTGATTCTCTGAGGATGAGGGAGTTAAAGTACTCAATTGATCATAAAGGTTTTCAAATTGGGCGCTGATTGTCAATTCATAAATTATATATCAGAGGAGGTTTTGTGGAGAATTTATTATTTTCACAGTCGAAATCATGAGTCAATTGAAGCTAGACCACCATCGAAAACCTGGAAGCACTGGACGGCCGTTTACTCCTATTATGGGACTCCTCAGCAGTGCGCATCCACGAATCCGCTCTCGCGAGCGAGATTCGAACCCAGGACCTACCAGTCCTGAGCCGAAGCCCTTAATCGACAGACCACTGAGCTGGCATCCAACGGTGTTAATGTCTAACTTCAACCAATCCACGATTTTGAGCGACCGTTCACCAATTGTCTTCAGTGACTTGAAACGTTTTAAAATATAATATTTAACAAACCATAAGAAATTATGCTCTAACTACAAAAGCTTGAAAAAACCGCGTTAAGCATCGTATACTTACTTACTTACGCTTGTTACCCCTCGTGTAGAAGTATAGGTCACTTATCAAGACACTCTGTCGAACTCTATCCTGGGCAATCCTTTCCAG] consensusID : consensus_8499#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 204 fasta sequence [CACTCACTGACATCATATGATCAGGTTTCACTGTCTTCAACTCTCTGTGATCCTCACTGGTCACAACTGGTCGTTCGGTTTGAGTCACCTGTACTTCTCGTTCTGCTACTCCCACTGCCTCCTACGCGGAGTCGCCTGTCCAACAGCCACCACCTCGTCATCTGACTGAGACTGCCACACAGGCGACCTCCGTCACCACACACA] [+] EMBL CD187556 [CACTCACTGACATCATATGATCAGGTTTCACTGTCTTCAACTCTCTGTGATCCTCACTGGTCACAACTGGTCGTTCGGTTTGAGTCACCTGTACTTCTCGTTCTGCTACTCCCACTGCCTCCTACGCGGAGTCGCCTGTCCAACAGCCACCACCTCGTCATCTGACTGAGACTGCCACACAGGCGACCTCCGTCACCACACACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8499#0 CCANAAACATAATCTTAATCATCAACAAGCTGAGATGTTGCATGAAGAAGACAAACTACA 60 consensus_8499#2 ------------------------------------------------------------ consensus_8499#1 ------------------------------------------------------------ consensus_8499#0 TTGACACCAACAATCAACGAAAGAAGGTATAGCACAAACACATGAATCAACTAAATAAGA 120 consensus_8499#2 ------------------------------------------------------------ consensus_8499#1 ------------------------------------------------------------ consensus_8499#0 GGGAATGAAATGCACATTATCCCTCAACAATAAAGGATAATCAGGAGAATCAAGCACACT 180 consensus_8499#2 ------------------------------------------------------------ consensus_8499#1 ------------------------------------------------------------ consensus_8499#0 TTCGGGCGACTTCACTGACACACTGGTCGCACTATCCACAACACACACACTTTCCTTCAC 240 consensus_8499#2 ------------------------------------------------------------ consensus_8499#1 ------------------------------------------------------------ consensus_8499#0 CGTCTGCACACAGGCTTCCAATGTTTGGATGGGTTTCGGTGGCTGCTGGACTGGAACAAC 300 consensus_8499#2 ------------------------------------------------------------ consensus_8499#1 ------------------------------------------------------------ consensus_8499#0 TGGTGCATGTATCTCACTCCAAGAATCCACCATGCACAATTGGACAGGTTTGGCTTGTGA 360 consensus_8499#2 ------------------------------------------------------------ consensus_8499#1 ----------------------------------------------------ACAGGAGG 8 consensus_8499#0 CGTCGCATCGGTGCGTTTCAACGACAAATGGGCAGCACCGTCGAGTAGAGATTTGTGTGG 420 consensus_8499#2 ------------------------------------------------------------ consensus_8499#1 AGTGAAATTGATGCCCCATGTCCACTAATTTAACTTTAAACCAACTTTGATTCTCTGAGG 68 consensus_8499#0 CTCGGTCTGTGCACCCACGTCGGACGAGGAGACTGGTACTGTGTCGATTTGTTGGTCGAC 480 consensus_8499#2 ------------------------------------------------------------ consensus_8499#1 ATGAGGGAGTTAAAGTAC-TCAATTGATCATAAAGGTTTTCAAATTGGGCGCTGATTGTC 127 consensus_8499#0 AGTGGAACGTTTCACGAACTGTGTGGCTTCCACTAGAGATGTTTTGCGAACAGGTTCAGG 540 consensus_8499#2 ------------------------------------------------------------ consensus_8499#1 AATTCATAAATTATATATCAGAGGAGGTTTTGTGGAGAATTTATTATTTTCACAGTCGAA 187 consensus_8499#0 TGTCGG---TAACTCTAATGAGGCGGTCTCGGTGATGAGAGGAGCTTTGACTTGAACGGT 597 consensus_8499#2 ------------------------------------------------------------ consensus_8499#1 ATCATGAGTCAATTGAAGCTAGACCACCATCGAAAACCTGGAAGCACTGGACGGCCGTTT 247 consensus_8499#0 GCGTTTCGAGACAATCTCATGCTGACTGGATTCCACGATGTGTGTGGTGACGGAGGTCGC 657 consensus_8499#2 ------------------------------------------------------------ consensus_8499#1 ACTCCTATTATGGGACTCCTCAGCAGTGCGCATCCACGAATCCGCTCTCGCGAGCGAGAT 307 consensus_8499#0 CTGTGTGGCAGTCTCAGTCAGATGACGAGGTGGTGGCTGTTGGACAGGCGACTCTGCGTA 717 consensus_8499#2 ------------------------------------------------------------ consensus_8499#1 TCGAACCCAGGACCTACCAGTCCTGAGCCGAAGCCCTTAATCGACAGACCACTGAGCT-- 365 consensus_8499#0 GGAGGCACTCACTGACATCATATGATCAGGTTTCACTG-TCTTCAACTCTCTGTGATC-C 775 consensus_8499#2 -----CACTCACTGACATCATATGATCAGGTTTCACTG-TCTTCAACTCTCTGTGATC-C 53 consensus_8499#1 ---GGCATCCAACGGTGTTA-ATGTCTAACTTCAACCAATCCACGATTTTGAGCGACCGT 421 ** ** * * * *** * ** ** ** * * * * * ** * consensus_8499#0 TCACTGGTCACAACTGGTCGTTCG----GTTTGAGTCACCTGTACTTCTCGTTCTGC--- 828 consensus_8499#2 TCACTGGTCACAACTGGTCGTTCG----GTTTGAGTCACCTGTACTTCTCGTTCTGC--- 106 consensus_8499#1 TCACCAATTGTCTTCAGTGACTTGAAACGTTTTAAAATATAATATTTAACAAACCATAAG 481 **** * ** * * **** * ** ** * * consensus_8499#0 ------TACTTCCACTGCTTCCGTCACTGTGTGGC-TGCTGGTCTGTTGC-ACCTGGTAG 880 consensus_8499#2 ------TACTCCCACTGCCTCCTACGCGGAGTCGCCTGTCCAACAGCCACCACCTCGTCA 160 consensus_8499#1 AAATTATGCTCTAACTACAAAAGCTTGAAAAAACCGCGTTAAGCATCGTATACTTACTTA 541 * ** *** * * * * ** * * consensus_8499#0 CCGGAGCTCATGACATCATATG-ATCAGGTTTCACTGTC-TTCAACTCTCTGTGATCCTC 938 consensus_8499#2 TCTGA-CTGAGACTGCCACACA-GGCGACCTCCGTCACC-ACACACA------------- 204 consensus_8499#1 CTTACGCTTGTTACCCCTCGTGTAGAAGTATAGGTCACTTATCAAGACACTCTGTCGAAC 601 ** * * * consensus_8499#0 ACTGGTCACAACTGGTCGTTCGGTTTGAGTCACCT 973 consensus_8499#2 ----------------------------------- consensus_8499#1 TCTATCCTGGGCAATCCTTTCCAG----------- 625 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||