These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8502#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1005 fasta sequence [TCGGCACGAGGTCATATTGTGTTGTATGCAACTTACTTACGTACGCCTGTTACTCGTAATGGAACATAGACCGCCAACCAGCATTCTCCAACCCACTCTGTCTTGGGCCTTCTTTTCTAGTTCTATCCATTTTTTTGTTCATTCTTCTCATTTCTGTCTCTGTTTCTCGGCATCATGTGTTTTTTGGTCTTCCTCTTCTTCTTTGGTCTTCAGGATTCCATGTGGCTACAGGTGGAGTTGTGTTGTATGCACACATATACCTATATATTGTAGAGTTCTCCCCTTTCTCTCTCTCCCCCCTTGAAATATAATGTACATTGGAATGCCAAAAAAAAGAAAAAAAACCTAGGCAATTGATTGTTTGTTTTACCGGATATATTTATTATAATTATTTCAGTCTCTTATTATTCTTTTCTTGTCGTTTACAGACAATAAATATTTCACACACCCCCTCCCGGGGAATAAATATCCCAGTAATAAACATTCTACACTATAACTGTAACAAATAAGTACTACTGAATAGTACTACTTACTTGATTCAATGTACATTTGTTCTTTTTTTTCGTTTATAATTTTGTGTGGATTGTTTTCTTTCCTTTTTTTTATAGTTTAATTGTACAGATATATAATTTCTCTTCTATCATATTGTATTCCAATCATTTGGATATGGAATATACCTATCAGTGTATGTATGTGTGTGTAAGTGGAGACGTTTCTTTTGTGCCCCTGTCTGGATATTTGGTTTAACCTTTCTATTGTAAGTAACCTATTCTTCTTTTCTTCTTCTCCATTATCATCATTGACTGTTTTTTGTTTAGTTATGAATATGAGATTACTTGTTTTCTATGAGAATGTGCAAACAGGTTATTATTCATTACGGAAATATATATCTCTGTTTTTACTCAACTGATTTAAAACAAAACATTTATTATTTTTGTTTGGTTCTTATTATTCTTGCTTTTTAATATTCTATGTATGTTAAATAAAAAAAAAGTAAAAAAAANC] [+] EMBL CD077362 [TCGGCACGAGGTCATATTGTGTTGTATGCAACTTACTTACGTACGCCTGTTACTCGTAATGGAACATAGACCGCCAACCAGCATTCTCCAACCCACTCTGTCTTGGGCCTTCTTTTCTAGTTCTATCCATTTTTTTGTTCATTCTTCTCATTTCTGTCTCTGTTTCTCGGCATCATGTGTTTTTTGGTCTTCCTCTTCTTCTTTGGTCTTCAGGATTCCATGTGGCTACAGGTGGAGTTGTGTTGTATGCACACATATACCTATATATTGTAGAGTTCTCCCCTTTCTCTCTCTCCCCCCTTGAAATATAATGTACATTGGAATGCCAAAAAAAAGAAAAAAAACCTAGGCAATTGATTGTTTGTTTTACCGGATATATTTATTATAATTATTTCAGTCTCTTATTATTCTTTTCTTGTCGTTTACAGACAATAAATATTTCACACACCCCCTCCCGGGGAATAAATATCCCAGTAATAAACATTCTACACTATAACTGTAACAAATAAGTACTACTGAATAGTACTACTTACTTGATTCA ] [+] EMBL CD083590 [ aggCTCATTTCTGTCTCTGTTTCTCGGCATCATGTGTTTTTTGGTCTTCCTCTTCTTCTTTGGTCTTCAGGATTCCATGTGGCTACAGGTGGAGTTGTGTTGTATGCACACATATACCTATATATTGTAGAGTTCTCCCCTTTCTCTCTCTCCCCCCTTGAAATAT ATGTACA ] [+] EMBL CD083591 [ TGATTGTTTGTTTTTTTGGATATATTTATTATAATTATTTCAGTCTCTTATTATTTTTTTCTTGTCGTTTACAGACAATAAATATTTCACACACCCCCTCCCGGGGAATAAATATCCCAGTAATAAACATTCTACACTATAACTGTAACAAATAAGTACTACTGAATAGTACTACTTAATTGATTCAATGTACATTTGTTCTTTTTTTTCGTTTATAATTTTGTGTGGATTGTTTTCTTTCCTTTTTTTTATAGTTTAATTGTACAGATATATAATTTCTCTTCTATCATATTGTATTCCAATCATTTGGATATGGAATA ] [+] EMBL CD082479 [ TTGTACAGATATATAATTTCTCTTCTATCATATTGTATTCCAATCATTTGGATATGGAATATACCTATCAGTGTATGTATGTGTGTGTAAGTGGAGACGTTTCTTTTGTGCCCCTGTCTGGATATTTGGTTTAACCTTTCTATTGTAAGTAACCTATTCTTCTTTTCTTCTTCTCCATTATCATCATTGACTGTTTTTTGTTTAGTTATGAATATGAGATTACTTGTTTTCTATGAGAATGTGCAAACAGGTTATTATTCATTACGGAAATATATATCTCTGTTTTTACTCAACTGATTTAAAACAAAACATTTATTATTTTTGTTTGGTTCTTATTATTCTTGCTTTTTAATATTC ] [-] EMBL CD076077 [ TGTACAGATATATAATTTCTCTTCTATCATATTGTATTCCAATCATTTGGATATGGAATATACCTATCAGTGTATGTATGTGTGTGTAAGTGGAGACGTTTCTTTTGTGCCCCTGTCTGGATATTTGGTTTAACCTTTCTATTGTAAGTAACCTATTCTTCTTTTCTTCTTCTCCATTATCATCATTGACTGTTTTTTGTTTAGTTATGAATATGAGATTACTTGTTTTCTATGAGAATGTGCAAACAGGTTATTATTCATTACGGAAATATATATCTCTGTTTTTACTCAACTGATTTAAAACAAAACATTTATTATTTTTGTTTGGGTCTTATTATTCTTGCTTAAAAATATTCTATGTATGTTAAATAAAAAAAAAGTAAAAAAAANC] consensusID : consensus_8502#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 401 fasta sequence [CTTACCCTTATATTTTGCTTTAAAAAGTAAATGTATTTGTACCAGTAATGTAATTTAAAGTTGAAATTGTCTCTTTAATCATTTCAGTTTAATTGTTCATATTGTGTTGTATGCAACTNACTTACGTACGCCTGTTACTCGTAATGGAACATAGACCACCAACCAGCATTCTCCAACCCACTCTGTCTTGGGCCTTCTTTTCTAGTTCTATCCATTTTTTTGTTCATTCTTCTCATTTCTGTCTCTGTTTCTCGGCATCATGTGTTTTTTGGTCTTCCTCTTCTTCTTTGGTCTTCAGGATTCCATGTGGCTACAGGTGGAGTTGTGTTGTATGCACACATATACCTATATATTGTAGAGTTCTCCCCTTTCTCTCCCCCCTCCTTGAAATATATGTACAT] [-] EMBL AA999644 [CTTACCCTTATATTTTGCTTTAAAAAGTAAATGTATTTGTACCAGTAATGTAATTTAAAGTTGAAATTGTCTCTTTAATCATTTCAGTTTAATTGTTCATATTGTGTTGTATGCAACTNACTTACGTACGCCTGTTACTCGTAATGGAACATAGACCACCAACCAGCATTCTCCAACCCACTCTGTCTTGGGCCTTCTTTTCTAGTTCTATCCATTTTTTTGTTCATTCTTCTCATTTCTGTCTCTGTTTCTCGGCATCATGTGTTTTTTGGTCTTCCTCTTCTTCTTTGGTCTTCAGGATTCCATGTGGCTACAGGTGGAGTTGTGTTGTATGCACACATATACCTATATATTGTAGAGTTCTCCCCTTTCTCTCCCCCCTCCTTGAAATATATGTACAT] consensusID : consensus_8502#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence [TTTCGGCGCATTGTGGAGACGTTTCTTTTGTGCCCCTGTCTGGATATTTGGTTTAACCTTTCTATTGTAAGTAACCTATTCTTCTTTTCTTCTTCTCCATTATCATCATTGACTGTTTTTTGTTTAGTTATGAATATGAGATTACTTGTTTTCTATGAGAATGTGCAAACAGGTTATTATTCATTACGGAAATATATATCTCTGTTTTAACTCAACTGATTTAAAACAAAACATTTATTTTTGTTGGGTTCTTATAAATTCTGGCTTTTTAATATCCTATG] [+] EMBL AW018286 [TTTCGGCGCATTGTGGAGACGTTTCTTTTGTGCCCCTGTCTGGATATTTGGTTTAACCTTTCTATTGTAAGTAACCTATTCTTCTTTTCTTCTTCTCCATTATCATCATTGACTGTTTTTTGTTTAGTTATGAATATGAGATTACTTGTTTTCTATGAGAATGTGCAAACAGGTTATTATTCATTACGGAAATATATATCTCTGTTTTAACTCAACTGATTTAAAACAAAACATTTATTTTTGTTGGGTTCTTATAAATTCTGGCTTTTTAATATCCTATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8502#0 TCGGCACGAGGTCATATTGTGTTGTATGCAACTTACTTACGTACGCCTGTTACTCGTAAT 60 consensus_8502#2 ------------------------------------------------------------ consensus_8502#1 ------------------------------------------------------------ consensus_8502#0 GGAACATAGACCGCCAACCAGCATTCTCCAACCCACTCTGTCTTGGGCCTTCTTTTCTAG 120 consensus_8502#2 ------------------------------------------------------------ consensus_8502#1 ------------------------------------------------------------ consensus_8502#0 TTCTATCCATTTTTTTGTTCATTCTTCTCATTTCTGTCTCTGTTTCTCGGCATCATGTGT 180 consensus_8502#2 ------------------------------------------------------------ consensus_8502#1 ------------------------------------------------------------ consensus_8502#0 TTTTTGGTCTTCCTCTTCTTCTTTGGTCTTCAGGATTCCATGTGGCTACAGGTGGAGTTG 240 consensus_8502#2 ------------------------------------------------------------ consensus_8502#1 ------------------------------------------------------------ consensus_8502#0 TGTTGTATGCACACATATACCTATATATTGTAGAGTTCTCCCCTTTCTCTCTCTCCCCCC 300 consensus_8502#2 ------------------------------------------------------------ consensus_8502#1 ------------------------------------------------------------ consensus_8502#0 TTGAAATATAATGTACATTGGAATGCCAAAAAAAAGAAAAAAAACCTAGGCAATTGATTG 360 consensus_8502#2 ------------------------------------------------------------ consensus_8502#1 ------------------------------------------------------------ consensus_8502#0 TTTGTTTTACCGGATATATTTATTATAATTATTTCAGTCTCTTATTATTCTTTTCTTGTC 420 consensus_8502#2 ------------------------------------------------------------ consensus_8502#1 ------------------------------------------------------------ consensus_8502#0 GTTTACAGACAATAAATATTTCACACACCCCCTCCCGGGGAATAAATATCCCAGTAATAA 480 consensus_8502#2 ------------------------------------------------------------ consensus_8502#1 ------------------------------------------------------------ consensus_8502#0 ACATTCTACACTATAACTGTAACAAATAAGTACTACTGAATAGTACTACTTACTTGATTC 540 consensus_8502#2 ------------------------------------------------------------ consensus_8502#1 ------------------------------------------------------------ consensus_8502#0 AATGTACATTTGTTCTTTTTTTTCGTTTATAATTTTGTGTGGATTGTTTTCTTTCCTTTT 600 consensus_8502#2 ------------------------------------------------------------ consensus_8502#1 ------------------------------------------------------------ consensus_8502#0 TTTTATAGTTTAATTGTACAGATATATAATTTCTCTTCTATCATATTGTATTCCAATCAT 660 consensus_8502#2 ------------------------------------------------------------ consensus_8502#1 --------------------------------------------------------CTTA 4 consensus_8502#0 TTGGATATGGAATATACCTATCAGTGTATGTATGTGTGTGTAAGTGGAGACGTTTCTTTT 720 consensus_8502#2 ------------------------------TTTCGGCGCATT-GTGGAGACGTTTCTTTT 29 consensus_8502#1 CCCTTATATTTTGCTTTAAAAAGTAAATGTATTTGTACCAGTAATGTAATTTAAAGTTGA 64 * ** * ** consensus_8502#0 GTGCCCCTGTCTGGATATTT-GGTTTAACCTTTC------TATTGTAAGTAACCTATTCT 773 consensus_8502#2 GTGCCCCTGTCTGGATATTT-GGTTTAACCTTTC------TATTGTAAGTAACCTATTCT 82 consensus_8502#1 AATTGTCTCTTTAATCATTTCAGTTTAATTGTTCATATTGTGTTGTATGCAACTNACTTA 124 ** * * **** ****** *** * ***** * *** * * consensus_8502#0 TCTTTTCTTCTTCTCCATTATC-ATCATTGACTGTTTTTTGTTTAGTTATGAATATGAGA 832 consensus_8502#2 TCTTTTCTTCTTCTCCATTATC-ATCATTGACTGTTTTTTGTTTAGTTATGAATATGAGA 141 consensus_8502#1 CGTACGCCTGTTACTCGTAATGGAACATAGACCACCAACCAGC-ATTCTCCAACCCACTC 183 * * * ** * * ** * *** *** * * ** consensus_8502#0 TTACTTG--TTTTCTATGAGAATGTGCAAACAGGTTATTATTCATTACGGAAATATATAT 890 consensus_8502#2 TTACTTG--TTTTCTATGAGAATGTGCAAACAGGTTATTATTCATTACGGAAATATATAT 199 consensus_8502#1 TGTCTTGGGCCTTCTTTTCTAGT-TCTATCCATTTTTTTGTTCATTCTTCTCATTTCTGT 242 * **** **** * * * * * ** ** ** ****** ** * * * consensus_8502#0 CTCTGTTTT---TACTCAACTGATTTAAAACAAAACATTTATTATT---TTTGTTTGGTT 944 consensus_8502#2 CTCTGTTTT---AACTCAACTGATTTAAAACAAAACATTTATT------TTTGTTGGGTT 250 consensus_8502#1 CTCTGTTTCTCGGCATCATGTGTTTTTTGGTCTTCCTCTTCTTCTTTGGTCTTCAGGATT 302 ******** *** ** *** * ** ** * * * ** consensus_8502#0 CT-TATTA-TTCTTGCTTTTTAATATTCTATGTATGTTAAATAAAAAAAAAGTAAAAAAA 1002 consensus_8502#2 CT-TATAAATTCTGGCTTTTTAATATCCTATG---------------------------- 281 consensus_8502#1 CCATGTGGCTACAGGTGGAGTTGTGTTGTATGCACACATATACCTATATATTGTAGAGTT 362 * * * * * * * * * **** consensus_8502#0 ANC------------------------------------ 1005 consensus_8502#2 --------------------------------------- consensus_8502#1 CTCCCCTTTCTCTCCCCCCTCCTTGAAATATATGTACAT 401 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||