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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8502#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1005 fasta sequence
[TCGGCACGAGGTCATATTGTGTTGTATGCAACTTACTTACGTACGCCTGTTACTCGTAATGGAACATAGACCGCCAACCAGCATTCTCCAACCCACTCTGTCTTGGGCCTTCTTTTCTAGTTCTATCCATTTTTTTGTTCATTCTTCTCATTTCTGTCTCTGTTTCTCGGCATCATGTGTTTTTTGGTCTTCCTCTTCTTCTTTGGTCTTCAGGATTCCATGTGGCTACAGGTGGAGTTGTGTTGTATGCACACATATACCTATATATTGTAGAGTTCTCCCCTTTCTCTCTCTCCCCCCTTGAAATATAATGTACATTGGAATGCCAAAAAAAAGAAAAAAAACCTAGGCAATTGATTGTTTGTTTTACCGGATATATTTATTATAATTATTTCAGTCTCTTATTATTCTTTTCTTGTCGTTTACAGACAATAAATATTTCACACACCCCCTCCCGGGGAATAAATATCCCAGTAATAAACATTCTACACTATAACTGTAACAAATAAGTACTACTGAATAGTACTACTTACTTGATTCAATGTACATTTGTTCTTTTTTTTCGTTTATAATTTTGTGTGGATTGTTTTCTTTCCTTTTTTTTATAGTTTAATTGTACAGATATATAATTTCTCTTCTATCATATTGTATTCCAATCATTTGGATATGGAATATACCTATCAGTGTATGTATGTGTGTGTAAGTGGAGACGTTTCTTTTGTGCCCCTGTCTGGATATTTGGTTTAACCTTTCTATTGTAAGTAACCTATTCTTCTTTTCTTCTTCTCCATTATCATCATTGACTGTTTTTTGTTTAGTTATGAATATGAGATTACTTGTTTTCTATGAGAATGTGCAAACAGGTTATTATTCATTACGGAAATATATATCTCTGTTTTTACTCAACTGATTTAAAACAAAACATTTATTATTTTTGTTTGGTTCTTATTATTCTTGCTTTTTAATATTCTATGTATGTTAAATAAAAAAAAAGTAAAAAAAANC]
[+] EMBL CD077362 [TCGGCACGAGGTCATATTGTGTTGTATGCAACTTACTTACGTACGCCTGTTACTCGTAATGGAACATAGACCGCCAACCAGCATTCTCCAACCCACTCTGTCTTGGGCCTTCTTTTCTAGTTCTATCCATTTTTTTGTTCATTCTTCTCATTTCTGTCTCTGTTTCTCGGCATCATGTGTTTTTTGGTCTTCCTCTTCTTCTTTGGTCTTCAGGATTCCATGTGGCTACAGGTGGAGTTGTGTTGTATGCACACATATACCTATATATTGTAGAGTTCTCCCCTTTCTCTCTCTCCCCCCTTGAAATATAATGTACATTGGAATGCCAAAAAAAAGAAAAAAAACCTAGGCAATTGATTGTTTGTTTTACCGGATATATTTATTATAATTATTTCAGTCTCTTATTATTCTTTTCTTGTCGTTTACAGACAATAAATATTTCACACACCCCCTCCCGGGGAATAAATATCCCAGTAATAAACATTCTACACTATAACTGTAACAAATAAGTACTACTGAATAGTACTACTTACTTGATTCA ]
[+] EMBL CD083590 [ aggCTCATTTCTGTCTCTGTTTCTCGGCATCATGTGTTTTTTGGTCTTCCTCTTCTTCTTTGGTCTTCAGGATTCCATGTGGCTACAGGTGGAGTTGTGTTGTATGCACACATATACCTATATATTGTAGAGTTCTCCCCTTTCTCTCTCTCCCCCCTTGAAATAT ATGTACA ]
[+] EMBL CD083591 [ TGATTGTTTGTTTTTTTGGATATATTTATTATAATTATTTCAGTCTCTTATTATTTTTTTCTTGTCGTTTACAGACAATAAATATTTCACACACCCCCTCCCGGGGAATAAATATCCCAGTAATAAACATTCTACACTATAACTGTAACAAATAAGTACTACTGAATAGTACTACTTAATTGATTCAATGTACATTTGTTCTTTTTTTTCGTTTATAATTTTGTGTGGATTGTTTTCTTTCCTTTTTTTTATAGTTTAATTGTACAGATATATAATTTCTCTTCTATCATATTGTATTCCAATCATTTGGATATGGAATA ]
[+] EMBL CD082479 [ TTGTACAGATATATAATTTCTCTTCTATCATATTGTATTCCAATCATTTGGATATGGAATATACCTATCAGTGTATGTATGTGTGTGTAAGTGGAGACGTTTCTTTTGTGCCCCTGTCTGGATATTTGGTTTAACCTTTCTATTGTAAGTAACCTATTCTTCTTTTCTTCTTCTCCATTATCATCATTGACTGTTTTTTGTTTAGTTATGAATATGAGATTACTTGTTTTCTATGAGAATGTGCAAACAGGTTATTATTCATTACGGAAATATATATCTCTGTTTTTACTCAACTGATTTAAAACAAAACATTTATTATTTTTGTTTGGTTCTTATTATTCTTGCTTTTTAATATTC ]
[-] EMBL CD076077 [ TGTACAGATATATAATTTCTCTTCTATCATATTGTATTCCAATCATTTGGATATGGAATATACCTATCAGTGTATGTATGTGTGTGTAAGTGGAGACGTTTCTTTTGTGCCCCTGTCTGGATATTTGGTTTAACCTTTCTATTGTAAGTAACCTATTCTTCTTTTCTTCTTCTCCATTATCATCATTGACTGTTTTTTGTTTAGTTATGAATATGAGATTACTTGTTTTCTATGAGAATGTGCAAACAGGTTATTATTCATTACGGAAATATATATCTCTGTTTTTACTCAACTGATTTAAAACAAAACATTTATTATTTTTGTTTGGGTCTTATTATTCTTGCTTAAAAATATTCTATGTATGTTAAATAAAAAAAAAGTAAAAAAAANC]
consensusID : consensus_8502#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 401 fasta sequence
[CTTACCCTTATATTTTGCTTTAAAAAGTAAATGTATTTGTACCAGTAATGTAATTTAAAGTTGAAATTGTCTCTTTAATCATTTCAGTTTAATTGTTCATATTGTGTTGTATGCAACTNACTTACGTACGCCTGTTACTCGTAATGGAACATAGACCACCAACCAGCATTCTCCAACCCACTCTGTCTTGGGCCTTCTTTTCTAGTTCTATCCATTTTTTTGTTCATTCTTCTCATTTCTGTCTCTGTTTCTCGGCATCATGTGTTTTTTGGTCTTCCTCTTCTTCTTTGGTCTTCAGGATTCCATGTGGCTACAGGTGGAGTTGTGTTGTATGCACACATATACCTATATATTGTAGAGTTCTCCCCTTTCTCTCCCCCCTCCTTGAAATATATGTACAT]
[-] EMBL AA999644 [CTTACCCTTATATTTTGCTTTAAAAAGTAAATGTATTTGTACCAGTAATGTAATTTAAAGTTGAAATTGTCTCTTTAATCATTTCAGTTTAATTGTTCATATTGTGTTGTATGCAACTNACTTACGTACGCCTGTTACTCGTAATGGAACATAGACCACCAACCAGCATTCTCCAACCCACTCTGTCTTGGGCCTTCTTTTCTAGTTCTATCCATTTTTTTGTTCATTCTTCTCATTTCTGTCTCTGTTTCTCGGCATCATGTGTTTTTTGGTCTTCCTCTTCTTCTTTGGTCTTCAGGATTCCATGTGGCTACAGGTGGAGTTGTGTTGTATGCACACATATACCTATATATTGTAGAGTTCTCCCCTTTCTCTCCCCCCTCCTTGAAATATATGTACAT]
consensusID : consensus_8502#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence
[TTTCGGCGCATTGTGGAGACGTTTCTTTTGTGCCCCTGTCTGGATATTTGGTTTAACCTTTCTATTGTAAGTAACCTATTCTTCTTTTCTTCTTCTCCATTATCATCATTGACTGTTTTTTGTTTAGTTATGAATATGAGATTACTTGTTTTCTATGAGAATGTGCAAACAGGTTATTATTCATTACGGAAATATATATCTCTGTTTTAACTCAACTGATTTAAAACAAAACATTTATTTTTGTTGGGTTCTTATAAATTCTGGCTTTTTAATATCCTATG]
[+] EMBL AW018286 [TTTCGGCGCATTGTGGAGACGTTTCTTTTGTGCCCCTGTCTGGATATTTGGTTTAACCTTTCTATTGTAAGTAACCTATTCTTCTTTTCTTCTTCTCCATTATCATCATTGACTGTTTTTTGTTTAGTTATGAATATGAGATTACTTGTTTTCTATGAGAATGTGCAAACAGGTTATTATTCATTACGGAAATATATATCTCTGTTTTAACTCAACTGATTTAAAACAAAACATTTATTTTTGTTGGGTTCTTATAAATTCTGGCTTTTTAATATCCTATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8502#0 TCGGCACGAGGTCATATTGTGTTGTATGCAACTTACTTACGTACGCCTGTTACTCGTAAT 60
consensus_8502#2 ------------------------------------------------------------
consensus_8502#1 ------------------------------------------------------------
consensus_8502#0 GGAACATAGACCGCCAACCAGCATTCTCCAACCCACTCTGTCTTGGGCCTTCTTTTCTAG 120
consensus_8502#2 ------------------------------------------------------------
consensus_8502#1 ------------------------------------------------------------
consensus_8502#0 TTCTATCCATTTTTTTGTTCATTCTTCTCATTTCTGTCTCTGTTTCTCGGCATCATGTGT 180
consensus_8502#2 ------------------------------------------------------------
consensus_8502#1 ------------------------------------------------------------
consensus_8502#0 TTTTTGGTCTTCCTCTTCTTCTTTGGTCTTCAGGATTCCATGTGGCTACAGGTGGAGTTG 240
consensus_8502#2 ------------------------------------------------------------
consensus_8502#1 ------------------------------------------------------------
consensus_8502#0 TGTTGTATGCACACATATACCTATATATTGTAGAGTTCTCCCCTTTCTCTCTCTCCCCCC 300
consensus_8502#2 ------------------------------------------------------------
consensus_8502#1 ------------------------------------------------------------
consensus_8502#0 TTGAAATATAATGTACATTGGAATGCCAAAAAAAAGAAAAAAAACCTAGGCAATTGATTG 360
consensus_8502#2 ------------------------------------------------------------
consensus_8502#1 ------------------------------------------------------------
consensus_8502#0 TTTGTTTTACCGGATATATTTATTATAATTATTTCAGTCTCTTATTATTCTTTTCTTGTC 420
consensus_8502#2 ------------------------------------------------------------
consensus_8502#1 ------------------------------------------------------------
consensus_8502#0 GTTTACAGACAATAAATATTTCACACACCCCCTCCCGGGGAATAAATATCCCAGTAATAA 480
consensus_8502#2 ------------------------------------------------------------
consensus_8502#1 ------------------------------------------------------------
consensus_8502#0 ACATTCTACACTATAACTGTAACAAATAAGTACTACTGAATAGTACTACTTACTTGATTC 540
consensus_8502#2 ------------------------------------------------------------
consensus_8502#1 ------------------------------------------------------------
consensus_8502#0 AATGTACATTTGTTCTTTTTTTTCGTTTATAATTTTGTGTGGATTGTTTTCTTTCCTTTT 600
consensus_8502#2 ------------------------------------------------------------
consensus_8502#1 ------------------------------------------------------------
consensus_8502#0 TTTTATAGTTTAATTGTACAGATATATAATTTCTCTTCTATCATATTGTATTCCAATCAT 660
consensus_8502#2 ------------------------------------------------------------
consensus_8502#1 --------------------------------------------------------CTTA 4
consensus_8502#0 TTGGATATGGAATATACCTATCAGTGTATGTATGTGTGTGTAAGTGGAGACGTTTCTTTT 720
consensus_8502#2 ------------------------------TTTCGGCGCATT-GTGGAGACGTTTCTTTT 29
consensus_8502#1 CCCTTATATTTTGCTTTAAAAAGTAAATGTATTTGTACCAGTAATGTAATTTAAAGTTGA 64
* ** * **
consensus_8502#0 GTGCCCCTGTCTGGATATTT-GGTTTAACCTTTC------TATTGTAAGTAACCTATTCT 773
consensus_8502#2 GTGCCCCTGTCTGGATATTT-GGTTTAACCTTTC------TATTGTAAGTAACCTATTCT 82
consensus_8502#1 AATTGTCTCTTTAATCATTTCAGTTTAATTGTTCATATTGTGTTGTATGCAACTNACTTA 124
** * * **** ****** *** * ***** * *** * *
consensus_8502#0 TCTTTTCTTCTTCTCCATTATC-ATCATTGACTGTTTTTTGTTTAGTTATGAATATGAGA 832
consensus_8502#2 TCTTTTCTTCTTCTCCATTATC-ATCATTGACTGTTTTTTGTTTAGTTATGAATATGAGA 141
consensus_8502#1 CGTACGCCTGTTACTCGTAATGGAACATAGACCACCAACCAGC-ATTCTCCAACCCACTC 183
* * * ** * * ** * *** *** * * **
consensus_8502#0 TTACTTG--TTTTCTATGAGAATGTGCAAACAGGTTATTATTCATTACGGAAATATATAT 890
consensus_8502#2 TTACTTG--TTTTCTATGAGAATGTGCAAACAGGTTATTATTCATTACGGAAATATATAT 199
consensus_8502#1 TGTCTTGGGCCTTCTTTTCTAGT-TCTATCCATTTTTTTGTTCATTCTTCTCATTTCTGT 242
* **** **** * * * * * ** ** ** ****** ** * * *
consensus_8502#0 CTCTGTTTT---TACTCAACTGATTTAAAACAAAACATTTATTATT---TTTGTTTGGTT 944
consensus_8502#2 CTCTGTTTT---AACTCAACTGATTTAAAACAAAACATTTATT------TTTGTTGGGTT 250
consensus_8502#1 CTCTGTTTCTCGGCATCATGTGTTTTTTGGTCTTCCTCTTCTTCTTTGGTCTTCAGGATT 302
******** *** ** *** * ** ** * * * **
consensus_8502#0 CT-TATTA-TTCTTGCTTTTTAATATTCTATGTATGTTAAATAAAAAAAAAGTAAAAAAA 1002
consensus_8502#2 CT-TATAAATTCTGGCTTTTTAATATCCTATG---------------------------- 281
consensus_8502#1 CCATGTGGCTACAGGTGGAGTTGTGTTGTATGCACACATATACCTATATATTGTAGAGTT 362
* * * * * * * * * ****
consensus_8502#0 ANC------------------------------------ 1005
consensus_8502#2 ---------------------------------------
consensus_8502#1 CTCCCCTTTCTCTCCCCCCTCCTTGAAATATATGTACAT 401
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||