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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8506#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 962 fasta sequence
[CCGNAGGCCATTAATTCGGCACGCAGGTTTAAATACAAATGTCAAGACAGTTCTTCTGTATGGGGTGGGAACCTGGAGAACTACGAAAACCATCATCCAGAAGATATAAGTGTTTATTTACAGTTGTCTACTCAAATTACTTCGGATCCATTGGCTAGATACTATCTGAAACATTCCACTGTGGGAGAGAACAAACCAGATTCCAGCGGAGGAAGAAGCGCTGAAAGTGGGTTGGGCACACTTTGAGGAAATCACCCAATTGCGTCACAAGACAAGCTCTCACATGGAATCCTGAAGGCCAAAGGAGAAGAGGAAGACCAAAGAACACATTACTCCGAGAAATGAAGACAGACATGAGAAGAATGAACAAAAACTGGATAGAATTAGAAAGGAAGGCCCAGGACAGAGTGAGTGGGTTGGAGAATGCTGGTCGGCGGCTTATGCTCCATTGGGAGTAACAGGCGCTGAATTTCGAGCTGATACTGCTGAAGCAGAAGTTAATCGACGTCTTATGGAAATAAAGAAAGCAAAAGAACGCATCATTACGGAACGTACTATGTATGAAACATTACGTAAAGAAATGGATACAATGATCAATGAATTTCATTCGATCTAATCTGCATAACATATTTCACAACCTGAATACAAAATTGCATGTATTGTATGCATATGGTTGTATTGTTAGGCTTTTTTGTTTGTTCTGTCCGTTTTATTTATTAAAGCTTCTTTTGTCATGAATAATTAAACTTAATAAAATATGAATCGTTAATATGCATGTAGCTTGTCCATTGTTACTTTCCTTTTTTGGTTCTGGCTCTNTCTTTTCCCTTTCCCTT-CACAGTTTGTACTTTT-ATAATGCCCCATTTG-CCTAGTTTTCC-TTTGTTGNGCATTNTGCTTA-TTATATNTTG-TTTAACTTT-AAGCATCGNNGTG-TTATCTGGTTG-TTATTTT-ATCTTT-ATAAATTT]
[+] EMBL CD081796 [CCGNAGGCCATTAATTCGGCACGCAGGTTTAAATACAAATGTCAAGACAGTTCTTCTGTATGGGGTGGGAACCTGGAGAACTACGAAAACCATCATCCAGAAGATATAAGTGTTTATTTACAGTTGTCTACTCAAATTACTTCGGATCCATTGGCTAGATACTATCTGAAACATTCCACTGTGGGAGAGAACAAACCAGATTCCAGCGGAGGAAGAAGCGCTGAAAGTGGGTTGGGCACACTTTGAGGAAATCACCCAATTGCGTCACAAGACAAGCTCTCACATGGAATCCTGAAGGCCAAAGGAGAAGAGGAAGACCAAAGAACACATTACTCCGAGAAATGAAGACAGACATGAGAAGAATGAACAAAAACTGGATAGAATTAGAAAGGAAGGCCCAGGACAGAGTGAGTGGGTTGGAGAATGCTGGTCGGCGGCTTATGCTCCATTGGGAGTAACAGGCGCTGAATTTCGAGCTGATACTGCTGAAGCAGAAGTTAATCGACGTCTTATGGAAATAAAGAAAGCAAAAGAACGCATCATTACGGAACGTACTATGTATGAAACATTACGTAAAGAAATGGATACAATGATCAATGAATTTCATTCGATCTAATCTGCATAACATATTTCACAACCTGAATACAAAATTGCATGTATTGTATGCATATGGTTGTATTGTTAGGCTTTTTTGTTTGTTCTGTCCGTTTTATTTATTAAAGCTTCTTTTGTCATGAATAATTAAACTTAATAAAATATGAATCGTTAATATGCATGTAGCTTGTCCATTGTTACTTTCCTTTTTTGGTTCTGGCTCTNTCTTTTCCCTTTCCCTT CACAGTTTGTACTTTT ATAATGCCCCATTTG CCTAGTTTTCC TTTGTTGNGCATTNTGCTTA TTATATNTTG TTTAACTTT AAGCATCGNNGTG TTATCTGGTTG TTATTTT ATCTTT ATAAA ]
[-] EMBL CD075527 [ GCTGAAAGTGGGTTGGGCACACTTTGAGGAAATCACCCAATTGCGTCACAAGACAAGCTCTCACATGGAATCCTGAAGGCCAAAGGAGAAGAGGAAGACCAAAGAACACATTACTCCGAGAAATGAAGACAGACATGAGAAGAATGAACAAAAACTGGATAGAATTAGAAAGGAAGGCCCAGGACAGAGTGAGTGGGTTGGAGAATGCTGGTCGGCGGCTTATGCTCCATTGGGAGTAACAGGCGCTGAATTTCGAGCTGATACTGCTGAAGCAGAAGTTAATCGACGTCTTATGGAAATAAAGAAAGCAAAAGAACGCATCATTACGGAACGTACTATGTATGAAACATTACGTAAAGAAATGGATACAATGATCAATGAATTTCATTCGATCTAATCTGCATAACATATTTCACAACCTGAATACAAAATTGCATGTATTGTATGCATATGGTTGTATTGTTAGGCTTTTTTGTTTGTTCTGTCCGTTTTATTTATTAAAGCTTCTTTTGTCATGAATAATTAAACTTAATAAAATATGAATCGTTAATATGCATGTAGCTTGTCCATTGTTACTTTCCTTTTTTGGTTCTGGCTCTTTCTTTTCCCTTTCCCTTCCACAGTTTGTACTTTTAATAATGCCCAATTTGTCCTAGTTTTCCTTTTGTTGTGCATTTTGCTTATTTATATTTTGTTTTAACTTTAAAGCATCGTGTTGTTTATCTGTTTGTTTATTTTGATCTTTAATAAATTT]
consensusID : consensus_8506#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 583 fasta sequence
[TCTGAAGATGAAATTAATAAACAACTTGCTGATAAGGAACGTGTAGCAGCTGCTCTAGAAAATCCTGCTCTACTTAAACTAGTGAATAATTGTCTAGCAATTCAAAATGAGTAAAGTATATTTCACATGACCCTGT-TCATTCACTTGCCATTCCTTGTAAATAACAATACATATCTATTAACTGACAGATATTTTGGCTTCTATTTCATAAATTCTTGTATATTGTTGT-GAATCAACAGTAATTCAAATGTACTTTTGAAAACTTACTTACTCACGCCTGTTACCCCTCGTGGAGGAGCATAGGCCGCTCACCAGCATTCTCCATCCAACTCTGTCCATGGCAATCCTTTCCAGTTTCTTCCAGTTGTTATTCATTCTTTTTCCGAAAAGCAAATTATTTTTCTTTATTAATCTTAAGTATTTAAGTTTTAGAAAAGTTTGTAATTAAACTGTAATCTTGCCTTTTGAGGTCAAACTTGTCTGCTCATTTTTCAACTATTTTGTTAATTTAAACTGGTGACAATTTTCTATTTAGTCCTCAGTTTTACACAAACTAGATCATTCACGTTGCACAATTAAACCA]
[-] EMBL CD075748 [TCTGAAGATGAAATTAATAAACAACTTGCTGATAAGGAACGTGTAGCAGCTGCTCTAGAAAATCCTGCTCTACTTAAACTAGTGAATAATTGTCTAGCAATTCAAAATGAGTAAAGTATATTTCACATGACCCTGT TCATTCACTTGCCATTCCTTGTAAATAACAATACATATCTATTAACTGACAGATATTTTGGCTTCTATTTCATAAATTCTTGTATATTGTTGT GAATCAACAGTAATTCAAATGTACTTTTGAAAACTTACTTACTCACGCCTGTTACCCCTCGTGGAGGAGCATAGGCCGCTCACCAGCATTCTCCATCCAACTCTGTCCATGGCAATCCTTTCCAGTTTCTTCCAGTTGTTATTCATTCTTTTTCCGAAAAGCAAATTATTTTTCTTTATTAATCTTAAGTATTTAAGTTTTAGAAAAGTTTGTAATTAAACTGTAATCTTGCCTTTTGAGGTCAAACTTGTCTGCTCATTTTTCAACTATTTTGTTAATTTAAACTGGTGACAATTTTCTATTTAGTCCTCAGTTTTACACAAACTAGATCATTCACGTTGCACAATTAAACCA]
[+] EMBL CD126189 [ ATTTCACAT ACCCTGTGTCATTCACTTGCCATTCCTTGTAAATTACAATACATATCTATTAACTGACAGATATTCTGGCATCTATTTCATAAATTCTTGTATATTGTTGTAGAATCAACAGTAATTCAAATGTACTTTAGAAAACTTACTTACTCACGTCTGTTACCCCTCGTGGAGGAGCATAGGCCGCTCACCAGCATTCTCCATCCAACTCTGTCCATGGCAATCCTTTCCAGTTTCTTCCAGTTGTTATTCATTCTTTTTCCGAAAAGCAAATTATTTTTCTTTATTAATCTTAAGTATTTAAGTTTTAGAAAAGTTTGTAATTAAACTGTAATCTTGCCTTTTGAGGTCA ]
[+] EMBL CD063115 [ TTTCACATGACCCTGT TCATTCACTTGCCATTCCTTGTAAATAACAATACATATCTATTAACTGACAGATATTTTGGCTTCTATTTCATAAATTCTTGTATATTGTTGT GAATCAACAGTAATTCAAATGTACTTTTGAAAACTTACTTACTCACGCCTGTTACCCCTCGTGGAGGAGCATAGGCCGCTCACTAGCATTCTCCATCCAACTCTGTCCATGGCAATCCTTTCCAGTTTCTTCCAGTTGTTATTCATTCTTTTTCCGAAAAGCAAATTATTTTTCTTTATTAATCTTAAGTATTTAAGTTTTAGAAAAGTTTGTAATTAA ]
consensusID : consensus_8506#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 305 fasta sequence
[TAACACAGGCGCAAGTTAATCAGTTGGAAGATATGATAGTACAGTATGAGACCTGGTTGAACCAGCAAATGATGCAACAAAATCCTCGACCACAAACTTCAGATCCTGTAGTTAAAGTTACAGATATCATATCTCAACAGCAAGCCATGGAATCAGTGTGTCATCCCATTATCAATGCTCCATAATCTCCAAATGGTCGTGATATCTCCAGATGACTTCCAGCAACGCTAATTCGGTTGCTCGGCATATGTGTGTCCAGGTTAGTGGACCCGAAAAGGGAAAGTTCATGACCCATCAAGTTCGAA]
[+] EMBL CD126004 [TAACACAGGCGCAAGTTAATCAGTTGGAAGATATGATAGTACAGTATGAGACCTGGTTGAACCAGCAAATGATGCAACAAAATCCTCGACCACAAACTTCAGATCCTGTAGTTAAAGTTACAGATATCATATCTCAACAGCAAGCCATGGAATCAGTGTGTCATCCCATTATCAATGCTCCATAATCTCCAAATGGTCGTGATATCTCCAGATGACTTCCAGCAACGCTAATTCGGTTGCTCGGCATATGTGTGTCCAGGTTAGTGGACCCGAAAAGGGAAAGTTCATGACCCATCAAGTTCGAA]
consensusID : consensus_8506#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 254 fasta sequence
[GAGCGAGTGCGTATCTGTGTGTTGAGCTATTTCCTACCGGTTGATGTTGGTGCTGCATCTTCAAGAACAACGCGCCTCAATGTTTCATGCTGTGATCTGCTAATGCACCTTGTTACTGGGTAGAACTAATCGACTCCTAAAATTTGTGACTAGTGGTATCATGTGTGGTGGTAGTGTTTTAATGTGTTTTGTCGCCTTTGCTTAATAGTTGATAATTTTGTGTGTTTTACTTCCTCTTCTTCTTCTTCTCCCTC]
[+] EMBL CD087979 [GAGCGAGTGCGTATCTGTGTGTTGAGCTATTTCCTACCGGTTGATGTTGGTGCTGCATCTTCAAGAACAACGCGCCTCAATGTTTCATGCTGTGATCTGCTAATGCACCTTGTTACTGGGTAGAACTAATCGACTCCTAAAATTTGTGACTAGTGGTATCATGTGTGGTGGTAGTGTTTTAATGTGTTTTGTCGCCTTTGCTTAATAGTTGATAATTTTGTGTGTTTTACTTCCTCTTCTTCTTCTTCTCCCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8506#0 CCGNAGGCCATTAATTCGGCACGCAGGTTTAAATACAAATGTCAAGACAGTTCTTCTGTA 60
consensus_8506#3 ------------------------------------------------------------
consensus_8506#1 ------------------------------------------------------------
consensus_8506#2 ------------------------------------------------------------
consensus_8506#0 TGGGGTGGGAACCTGGAGAACTACGAAAACCATCATCCAGAAGATATAAGTGTTTATTTA 120
consensus_8506#3 ------------------------------------------------------------
consensus_8506#1 ------------------------------------------------------------
consensus_8506#2 ------------------------------------------------------------
consensus_8506#0 CAGTTGTCTACTCAAATTACTTCGGATCCATTGGCTAGATACTATCTGAAACATTCCACT 180
consensus_8506#3 ------------------------------------------------------------
consensus_8506#1 ------------------------------------------------------------
consensus_8506#2 ------------------------------------------------------------
consensus_8506#0 GTGGGAGAGAACAAACCAGATTCCAGCGGAGGAAGAAGCGCTGAAAGTGGGTTGGGCACA 240
consensus_8506#3 ------------------------------------------------------------
consensus_8506#1 ------------------------------------------------------------
consensus_8506#2 ------------------------------------------------------------
consensus_8506#0 CTTTGAGGAAATCACCCAATTGCGTCACAAGACAAGCTCTCACATGGAATCCTGAAGGCC 300
consensus_8506#3 ------------------------------------------------------------
consensus_8506#1 ------------------------------------------------------------
consensus_8506#2 ------------------------------------------------------------
consensus_8506#0 AAAGGAGAAGAGGAAGACCAAAGAACACATTACTCCGAGAAATGAAGACAGACATGAGAA 360
consensus_8506#3 ------------------------------------------------------------
consensus_8506#1 ------------------------------------------------------------
consensus_8506#2 ------------------------------------------------------------
consensus_8506#0 GAATGAACAAAAACTGGATAGAATTAGAAAGGAAGGCCCAGGACAGAGTGAGTGGGTTGG 420
consensus_8506#3 ------------------------------------------------------------
consensus_8506#1 -----TCTGAAGATGAAATTAATAAACAACTTGCTGATAAGGAACGTGTAGCAGCTGCTC 55
consensus_8506#2 ------------------------------------------------------------
consensus_8506#0 AGAATGCTGGTCGGCGGCTTATGCTCCATTGGGAGTAACAGGCGCTGAATTTCGAGCTGA 480
consensus_8506#3 ------------------------------------------------------------
consensus_8506#1 TAGAAAATCCTGCTCTACTTAAACTAGTGAATAATTGTCTAGCAATTCAAAATGAGTAAA 115
consensus_8506#2 ------------------------------------------------------------
consensus_8506#0 TACTGCTGAAGCAGAAGTTAATCGACGTCTTATGGAAATAAAGAAAGCAAAAGAACGCAT 540
consensus_8506#3 ------------------------------------------------------------
consensus_8506#1 GTATATTTCACATGACCCTGTTCATTCACTTGCCATTCCTTGTAAATAACAATACATATC 175
consensus_8506#2 ------------------------------------------------------------
consensus_8506#0 CATTACGGAACGTACTATGTATGAAACATTACGTAAAGAAATGGATACAATGATCAATGA 600
consensus_8506#3 ------------------------------------------------------------
consensus_8506#1 TATTAACTGACAGATATTTTGGCTTCTATTTCATAAATTCTTGTATATTGTTGTGAATCA 235
consensus_8506#2 ------------------------------------------------------------
consensus_8506#0 ATTTCATTCGATCTAATCTGCATAACATATTTCACAACCTGAATACAAAATTGCATGTAT 660
consensus_8506#3 ---------------------------------------------------------GAG 3
consensus_8506#1 A---CAGTAATTCAAATGTACTTTTGAAAACTTACTTACTCACGCCTGTTACCCCTCGTG 292
consensus_8506#2 ------------------------------------TAACACAGGCGCAAGTTAATCAGT 24
consensus_8506#0 TGTATGCATATGGTTGTATTGTTAGGCTTTTTTGTTTGTTCTGTCCGTTTTATTTATTAA 720
consensus_8506#3 CGAGTGCGTAT--CTGTGT-GTTGAGCTATT-------TCCTACCGGTTGATGTTGGTGC 53
consensus_8506#1 GAGGAGCATAGG-CCGCTCACCAGCATTCTCCATCCAACTCTGTCCATGGCAATCCTTTC 351
consensus_8506#2 TGGAAG-ATATGATAGTACAGTATGAGACCT-----GGTTGAACCAGCAAATGATGCAAC 78
* ** * *
consensus_8506#0 AGCTTCTTTTGTCATGA-ATAATTAAACTTAATAAAATATGAATCGTTAATATGCATGTA 779
consensus_8506#3 TGCATCTTCAAGAACAACGCGCCTCAATGTTTCATGCTGTGATCTGCTAATGCACCTTGT 113
consensus_8506#1 CAGTTTCTTCCAGTTGTTATTCATTCTTTTTCCGAAAAGCAAATTATTTTTCTTTATTAA 411
consensus_8506#2 AAAATCCTCGACCACAA-ACTTCAGATCCTGTAGTTAAAGTTACAGATATCATATCTCAA 137
* * * * *
consensus_8506#0 GCTTGTCCATTGTTACTTTCCT-----TTTTTGGTTCTGGCTCTNTCTTTTCCCTTTC-C 833
consensus_8506#3 TACTGGGTAGAACTAATCGACT-----CCTAAAATT-TGTGACTAGTGGTATCATGTG-T 166
consensus_8506#1 TCTTAAGTATTTAAGTTTTAGAAA-AGTTTGTAATT-AAACTGTAATCTTGCCTTTTG-A 468
consensus_8506#2 CAGCAAGCCATGGAATCAGTGTGTCATCCCATTATCAATGCTCCATAATCTCCAAATGGT 197
* * *
consensus_8506#0 CTTCACAGTTTGTACTTTTATAATGCCCCATTTGCCTAGTTTTCCTTTGTTGNGCATTNT 893
consensus_8506#3 GGTGGTAGTGTTTTAATGTGTTTTGTCGCCTTTGCTTAATA-------GTTGATAATTTT 219
consensus_8506#1 GGTCAAACTTGTCTGCTCATTTTTCAACTATTTTGTTAATTTAAACT-GGTGACAATTTT 527
consensus_8506#2 CGTGATATCTCCAGATGACTTCCAGCAACGCTAATTCGGTT-------GCTCGGCAT-AT 249
* * * * * * * ** *
consensus_8506#0 GCTTATTATATNTTGTTTAACTTTAAGCATCGNNGTGTTATCTGGTTGTTATTTTATCTT 953
consensus_8506#3 GTGTGTTTTACTTCCTCTTCTTCTTCTTCTCCCTC------------------------- 254
consensus_8506#1 CTATTTAGTCCTCAGTTTTACACAAACTAGATCATTCACGTTGCACAATTAAACCA---- 583
consensus_8506#2 GTGTGTCCAGGTTAGTGGACCCGAAAAGGGAAAGTTCATGACCCATCAAGTTCGAA---- 305
* * *
consensus_8506#0 TATAAATTT 962
consensus_8506#3 ---------
consensus_8506#1 ---------
consensus_8506#2 ---------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||