cluster # 8508

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Schistosoma mansoni
cluster # 8508 cluster # 8508 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8508#0 length = 913 sequences # 4

consensus_8508#1 length = 714 sequences # 2
consensus_8508#2 length = 152 sequences # 1

consensusID : consensus_8508#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 913
fasta sequence

                              [ACGTTAGCACCCCAGGACTGTCTCCCATGCTCGCACTTGACGGTATTCAGAGTTTGCCATGGTTTGGTAAGTCGCGATGACCCCCTAGCCATAACAGTGCTTTACCCCCGTCAGTGATACATGAGGCACTACCTAAATAGTTTTCGAGGAGAACCAGCTATTTCCAAGTTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCCCTAACTTTGCAACGTTAGTGGGTTCGGACCTCCAGTGCGTGTTACCGCACCTTCATCCTGGCCATGGATAGATCACTTGGTTTCGGGTCTACGCCCAGCAACTGTGCGCCCTATTCGGACTCGGTTTCCCTACGCCTCCCCTATTTGGTTAAGCTTGCTACTGAACGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACTCCACGAAGGGAGCTCCCACTGTTTGTATGCATCCGGTTTCAGGTTCTATTTCACTCCCCTCCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATGATGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAGGGTTTCTCGTGCCCCGCCCTACTTGTCGCACGCTCAGACCCGCCATCTACCTTTCGCATACGGGACTATCACCCTGTATCGTCGGACTTTCCAGACCGTTTTGCTAAGTAAATGGTTTAGTCGTGCAGGCTACTCCCAGTTCGCTCGCCACTACTTTGGGAATCTCGGTTGATTTCTGTTCCTCGAGCTACTTAGATGTTTCAGTTCGCTCGGTTCGCTTCCTCTGGCCTATGTATTCAGCCAGGGATGACCCTTACGGGCCGGGTTTCCCCATTCGGACATCTGCGGATCAAAGCTTCATTGCCAGCTCCCCGCAGCTTTTCGCAGGCTTGCACGTCCTTCATC]

[+] EMBL CD088134             [ACGTTAGCACCCCAGGACTGTCTCCCATGCTCGCACTTGACGGTATTCAGAGTTTGCCATGGTTTGGTAAGTCGCGATGACCCCCTAGCCATAACAGTGCTTTACCCCCGTCAGTGATACATGAGGCACTACCTAAATAGTTTTCGAGGAGAACCAGCTATTTCCAAGTTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCCCTAACTTTGCAACGTTAGTGGGTTCGGACCTCCAGTGCGTGTTACCGCACCTTCATCCTGGCCATGGATAGATCACTTGGTTTCGGGTCTACGCCCAGCAACTGTGCGCCCTATTCGGACTCGGTTTCCCTACGCCTCCCCTATTTGGTTAAGCTTGCTACTGAACGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACTCCACGAAGGGAGCTCCCACTGTTTGTATGCATCCGGTTTCAGGTTCTATTTCACTCCCCTCCCGGGGTTCTTTTCACCTTTCCCTCACGGTACTG                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD088100             [ CGTTAGCACCCCAGGACTGTCTCCCATGCTCGCACTTGACGGTATTCAGAGTTTGCCATGGTTTGGTAAGTCGCGATGACCCCCTAGCCATAACAGTGCTTTACCCCCGTCAGTGATACATGAGGCACTACCTAAATAGTTTTCGAGGAGAACCAGCTATTTCCAAGTTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCCCTAACTTTGCAACGTTAGTGGGTTCGGACCTCCAGTGCGTGTTACCGCACCTTCATCCTGGCCATGGATAGATCACTTGGTTTCGGGTCTACGCCCAGCAACTGTGCGCCCTATTCGGACTCGGTTTCCCTACGCCTCCCCTATTTGGTTAAGCTTGCTACTGAACGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACTCCACGAAGGGAGCTCCCACTGTTTGTATGCATCCGGTCTCAGGTTCTATTTCACTCCCCTCCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGG                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD087416             [                                                                                                                                                                                                                                                                                                                                                                                                                                          ctACTTTTTGTAAGCATGCGGTTTCAGGATCTATTTCACTCCCCTCCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATGATGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAGGGTTTCTCGTGCCCCGCCCTACTTGTCGCACGCTCAGACCCGCCATCTACCTTTCGCATACGGGACTATCACCCTGTATCGTCGGACTTTCCAGACCGTTTTGCTAAGTAAATGGTTTAGTCGTGCAGGCTACTCCCAGTTCGCTCGCCACTACTTTGGGAA                                                                                                                                                                                       ]
[+] EMBL CD089667             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TTGGAGGATGGTCCCCCCATCTTCAAACAGGATTTCACGTGTCCCGCCCTACTTGTCGCACGCTCAGACCCGCCATCTACTTTTCGCATACGGGACTATCACCCTGTATCGTCGGACTTTCCAGACCGTTTTGCTAAGTAAATGGTTTAGTCGTGCAGGCTACTCCCAGTTCGCTCGCCACTACTTTGGGAATCTCGGTTGATTTCTGTTCCTCGAGCTACTTAGATGTTTCAGTTCGCTCGGTTCGCTTCCTCTGGCCTATGTATTCAGCCAGGGATGACCCTTACGGGCCGGGTTTCCCCATTCGGACATCTGCGGATCAAAGCTTCATTGCCAGCTCCCCGCAGCTTTTCGCAGGCTTGCACGTCCTTCATC]




>consensus_8508#0
ACGTTAGCACCCCAGGACTGTCTCCCATGCTCGCACTTGACGGTATTCAGAGTTTGCCAT
GGTTTGGTAAGTCGCGATGACCCCCTAGCCATAACAGTGCTTTACCCCCGTCAGTGATAC
ATGAGGCACTACCTAAATAGTTTTCGAGGAGAACCAGCTATTTCCAAGTTTGTTTAGCCT
TTCACCCCTATCCACAGCTCATCCCCTAACTTTGCAACGTTAGTGGGTTCGGACCTCCAG
TGCGTGTTACCGCACCTTCATCCTGGCCATGGATAGATCACTTGGTTTCGGGTCTACGCC
CAGCAACTGTGCGCCCTATTCGGACTCGGTTTCCCTACGCCTCCCCTATTTGGTTAAGCT
TGCTACTGAACGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACTCCACGAAGG
GAGCTCCCACTGTTTGTATGCATCCGGTTTCAGGTTCTATTTCACTCCCCTCCCGGGGTT
CTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATGATGAGTATTTAGCCTT
GGAGGATGGTCCCCCCATATTCAGACAGGGTTTCTCGTGCCCCGCCCTACTTGTCGCACG
CTCAGACCCGCCATCTACCTTTCGCATACGGGACTATCACCCTGTATCGTCGGACTTTCC
AGACCGTTTTGCTAAGTAAATGGTTTAGTCGTGCAGGCTACTCCCAGTTCGCTCGCCACT
ACTTTGGGAATCTCGGTTGATTTCTGTTCCTCGAGCTACTTAGATGTTTCAGTTCGCTCG
GTTCGCTTCCTCTGGCCTATGTATTCAGCCAGGGATGACCCTTACGGGCCGGGTTTCCCC
ATTCGGACATCTGCGGATCAAAGCTTCATTGCCAGCTCCCCGCAGCTTTTCGCAGGCTTG
CACGTCCTTCATC

consensusID : consensus_8508#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 714
fasta sequence

                              [TATAGCTTTAGAATCTCGGCATTTGACATTTGTTAGAGAGGATTCATGCCCGTCTCATTAGAATGACGTTCACTTTAATGTATTAATTTCCATACCATCTGAAGAAATCATTTCAGATAACACACTAGATATCTACTGCAACCTATCCACCTTGTTACCTTGTTAATCGATAATACCTCAAATTCTGAGTATCGACAGTCTTCTTATTGTAGATGTTTCAGCAAAGATGACTAGTGTAATACAACCAAATGGGAAAATAACTTTGTATTTTGATAACGTAAGTTGCACAATCTCATGAAAATGTAATTTTGTTCATGTACTTCAGATCATTCTACTGTTTCATATTATTAAATTCTGTCAAAGGTGTCTGGTTAAGTTGACCATGATAAAAAGAGATCAACATTATGTAATGAGCAAACGGACTAGTTGACAAGATTGTCAATCGTTTTAATGACACACTATTAAAGCACGTGTTGAAAATAATGAATAATCAGAAGTGAAAATCTATCAGAATAAGTAATCATGTGTTCGTGACGAATATTAAAGGATAGTGTATGTTTGAGTACTATACAGAATGTGTCATATTCTGTCATGCTCCATTTCATCTTGTTAAGATTAGCTGTTCGGATTGTTCATTGTTGAAAATCCAGGTTGCAGCATCCTCACAGTTATTTACCATCATATTTCATTTCAACAGACGAAAATTTACATTTC]

[-] EMBL CD162274             [TATAGCTTTAGAATCTCGGCATTTGACATTTGTTAGAGAGGATTCATGCCCGTCTCATTAGAATGACGTTCACTTTAATGTATTAATTTCCATACCATCTGAAGAAATCATTTCAGATAACACACTAGATATCTACTGCAACCTATCCACCTTGTTACCTTGTTAATCGATAATACCTCAAATTCTGAGTATCGACAGTCTTCTTATTGTAGATGTTTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD115086             [                                                                                                               TTCAGATAACACACTAGATATCTACTGCAACCTATCCACCTTGTTACCTTGTTAATCGATAATACCTCAAATTCTGAGTATCGACAGTCTTCTTATTGTAGATGTTTCAGCAAAGATGACTAGTGTAATACAACCAAATGGGAAAATAACTTTGTATTTTGATAACGTAAGTTGCACAATCTCATGAAAATGTAATTTTGTTCATGTACTTCAGATCATTCTACTGTTTCATATTATTAAATTCTGTCAAAGGTGTCTGGTTAAGTTGACCATGATAAAAAGAGATCAACATTATGTAATGAGCAAACGGACTAGTTGACAAGATTGTCAATCGTTTTAATGACACACTATTAAAGCACGTGTTGAAAATAATGAATAATCAGAAGTGAAAATCTATCAGAATAAGTAATCATGTGTTCGTGACGAATATTAAAGGATAGTGTATGTTTGAGTACTATACAGAATGTGTCATATTCTGTCATGCTCCATTTCATCTTGTTAAGATTAGCTGTTCGGATTGTTCATTGTTGAAAATCCAGGTTGCAGCATCCTCACAGTTATTTACCATCATATTTCATTTCAACAGACGAAAATTTACATTTC]




>consensus_8508#1
TATAGCTTTAGAATCTCGGCATTTGACATTTGTTAGAGAGGATTCATGCCCGTCTCATTA
GAATGACGTTCACTTTAATGTATTAATTTCCATACCATCTGAAGAAATCATTTCAGATAA
CACACTAGATATCTACTGCAACCTATCCACCTTGTTACCTTGTTAATCGATAATACCTCA
AATTCTGAGTATCGACAGTCTTCTTATTGTAGATGTTTCAGCAAAGATGACTAGTGTAAT
ACAACCAAATGGGAAAATAACTTTGTATTTTGATAACGTAAGTTGCACAATCTCATGAAA
ATGTAATTTTGTTCATGTACTTCAGATCATTCTACTGTTTCATATTATTAAATTCTGTCA
AAGGTGTCTGGTTAAGTTGACCATGATAAAAAGAGATCAACATTATGTAATGAGCAAACG
GACTAGTTGACAAGATTGTCAATCGTTTTAATGACACACTATTAAAGCACGTGTTGAAAA
TAATGAATAATCAGAAGTGAAAATCTATCAGAATAAGTAATCATGTGTTCGTGACGAATA
TTAAAGGATAGTGTATGTTTGAGTACTATACAGAATGTGTCATATTCTGTCATGCTCCAT
TTCATCTTGTTAAGATTAGCTGTTCGGATTGTTCATTGTTGAAAATCCAGGTTGCAGCAT
CCTCACAGTTATTTACCATCATATTTCATTTCAACAGACGAAAATTTACATTTC

consensusID : consensus_8508#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 152
fasta sequence

                              [GTCTCACGCGAATAAGTGCATGTGGTGGATGCCTTGGCGATTACAGGCGAAGAAGGACGTGCAAGCCTGCGAAAAGCTCCGGGGAGCTGGCAATGAAGCTTTGATCCGGAGATGTCCGAATGGGGAAACCCACCCCGCAAGGGGTATCGCAC]

[+] EMBL CD086682             [GTCTCACGCGAATAAGTGCATGTGGTGGATGCCTTGGCGATTACAGGCGAAGAAGGACGTGCAAGCCTGCGAAAAGCTCCGGGGAGCTGGCAATGAAGCTTTGATCCGGAGATGTCCGAATGGGGAAACCCACCCCGCAAGGGGTATCGCAC]




>consensus_8508#2
GTCTCACGCGAATAAGTGCATGTGGTGGATGCCTTGGCGATTACAGGCGAAGAAGGACGT
GCAAGCCTGCGAAAAGCTCCGGGGAGCTGGCAATGAAGCTTTGATCCGGAGATGTCCGAA
TGGGGAAACCCACCCCGCAAGGGGTATCGCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8508#0      -----------ACGTTAGCACCCCAGGACTGTCTCCCATGCTCGCACTTGACGGTATTCA 49
consensus_8508#2      ------------------------------------------------------------
consensus_8508#1      TATAGCTTTAGAATCTCGGCATTTGACATTTGTTAGAGAGGATTCATGCCCGTCTCATTA 60
                                                                                  

consensus_8508#0      GAGTTTGCCATGGTTTGGTAAGTCGCGATGACCCCCTAGCCATAACAGTGCTTTACCCCC 109
consensus_8508#2      -------------------------------------------------GTCTCACGCGA 11
consensus_8508#1      GAATGACGTTCACTTTAATGTATTAATTTCCATACCATCTGAAGAAATCATTTCAGATAA 120
                                                                          * *     

consensus_8508#0      GTCAGT-GATACATGAGGCAC--TACCTAAATAGTTTTCGAGGAGAACCAGCTATTTCCA 166
consensus_8508#2      ATAAGT-G-CATGTGGTGGA---TGCCTTGGCGATTAC--AGGCGAAGAAGG-ACGTGCA 63
consensus_8508#1      CACACTAGATATCTACTGCAACCTATCCACCTTGTTACCTTGTTAATCGATA-ATACCTC 179
                         * * *  *  *   * *   *  *       **     *   *   *   *      

consensus_8508#0      AGTTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCCCTAACTTTGCAACGTT--AGT 224
consensus_8508#2      AGCCTGCGAAAAGCTCCGGG--GAGCTGGCAATGAAGCTTTGATCCGGAGATGTCCGAAT 121
consensus_8508#1      AAATTCTGAGTATCGACAGT--CTTCTTATTGTAGATGTTTCAGCAAAGATGACTAGTGT 237
                      *   *           *        *      *       * *                *

consensus_8508#0      GGGTTCGGACCTCCAGTGCGTGTTACCGCACCTTCATCCTGGCCATGGATAGATCACTTG 284
consensus_8508#2      GGGGAAACCCACCCCGCAAGGGGTATCGCAC----------------------------- 152
consensus_8508#1      AATACAACCAAATGGGAAAATAACTTTGTATTTTGATAACGTAAGTTGCACAATCTCATG 297
                                     *           * *                              

consensus_8508#0      GTTTCGGGTCTACGCCCAGCAACTGTGCGCCCTATTCGGACTCGGTTTCCCTACGCCTCC 344
consensus_8508#2      ------------------------------------------------------------
consensus_8508#1      AAAATGTAATTTTGTTCATGTACTTCAGATCATTCTACTGTTTCATATTATTAAATTCTG 357
                                                                                  

consensus_8508#0      CCTATTTGGTTAAGCTTGCTACTGAACGTAAGTCGCTGACCCATTATACAAAAGGTACGC 404
consensus_8508#2      ------------------------------------------------------------
consensus_8508#1      TCAAAGGTGTCTGGTTAAGTTGACCATGATAAAAAGAGATCAACATTATGTAATGAGCAA 417
                                                                                  

consensus_8508#0      AGTCACTCCACGAAGGGAGCTCCCACTGTTTGTATGCATCCGGTTTCAGGTTCTATTTCA 464
consensus_8508#2      ------------------------------------------------------------
consensus_8508#1      ACGGACTAGTTGACAAGATTGTCAATCGTTTTAATGACACACTATTAAAGCACGTGTTGA 477
                                                                                  

consensus_8508#0      CTCCCCTCCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATG 524
consensus_8508#2      ------------------------------------------------------------
consensus_8508#1      AAATAATGAATAATCAGAAGTGAAAATCTATCAGAATAAGTAATCATGTGTTCGTGACGA 537
                                                                                  

consensus_8508#0      ATGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAGGGTTTCTCGTGCCCCG 584
consensus_8508#2      ------------------------------------------------------------
consensus_8508#1      ATATTAAAGGATAGTGTATGTTTGAGTACTATACAGAATGTGTCATATTCTGTCATGCTC 597
                                                                                  

consensus_8508#0      CCCTACTTGTCGCACGCTCAGACCCGCCATCTACCTTTCGCATACGGGACTATCACCCTG 644
consensus_8508#2      ------------------------------------------------------------
consensus_8508#1      CATTTCATCTTGTTAAGATTAGCTGTTCGGATTGTTCATTGTTGAAAATCCAGGTTGCAG 657
                                                                                  

consensus_8508#0      TATCGTCGGACTTTCCAGACCGTTTTGCTAAGTAAATGGTTTAGTCGTGCAGGCTACTCC 704
consensus_8508#2      ------------------------------------------------------------
consensus_8508#1      CATCCTCACAGTTATTTACCATCATATTTCATTTCAACAGACGAAAATTTACATTTC--- 714
                                                                                  

consensus_8508#0      CAGTTCGCTCGCCACTACTTTGGGAATCTCGGTTGATTTCTGTTCCTCGAGCTACTTAGA 764
consensus_8508#2      ------------------------------------------------------------
consensus_8508#1      ------------------------------------------------------------
                                                                                  

consensus_8508#0      TGTTTCAGTTCGCTCGGTTCGCTTCCTCTGGCCTATGTATTCAGCCAGGGATGACCCTTA 824
consensus_8508#2      ------------------------------------------------------------
consensus_8508#1      ------------------------------------------------------------
                                                                                  

consensus_8508#0      CGGGCCGGGTTTCCCCATTCGGACATCTGCGGATCAAAGCTTCATTGCCAGCTCCCCGCA 884
consensus_8508#2      ------------------------------------------------------------
consensus_8508#1      ------------------------------------------------------------
                                                                                  

consensus_8508#0      GCTTTTCGCAGGCTTGCACGTCCTTCATC 913
consensus_8508#2      -----------------------------
consensus_8508#1      -----------------------------