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Schistosoma mansoni
cluster # 8509 cluster # 8509       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8509#0 length = 1104 sequences # 3  
consensus_8509#1 length = 566 sequences # 3  
consensus_8509#2 length = 137 sequences # 1  

consensusID : consensus_8509#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1104
fasta sequence
                              [TCAATCAGTTGAGAACACGAGCACACAGACTGATCCGATGGCTCAAGTCCCTACTGTACTACCAAAAACCACATTCGATGTTGTGACTCAATCTGGTACTGTCCACTGTGCACAGTCAGTTCAGACTATTCCAGAGGAACGACCAGTATTCCACACTGTCAATGTAGGAGTAGATCTTACTGGGAAATTACAGTCCGTATTACAACTTTGGCTTTTGAAAATGCAACGGGCAATTATTTGTGGGTAGGAACTGATCGAGGCATAATCCAATCCTATTTATGTGATCCATCAACAGGTTTTATTATGAGATCACAACGT-GTCGATATATCATCACTGAATCTGTCTGTCG-TTCCAACCTGCCTTGAGAACGAAATAAAACTTGATGATTTGTTGCACGAAAGACCGCTTAGCACTCGGAAAACCTATCTCCTGTCTAAAGCAGATCAAAGTTTCAAAAGGTGGAGCAGTCTGAAGAGCCGAACACGTACGAATAGTGGGATAGTTAAGTTACGTAGTAGTGAAGGTACATCGTTAACGCCAAGCATAACTAGTCTTTCTATATATTCATGGCTATCCAAAGAAAAANNNNNNNNNNNNNNNNTGATCAATGCAGCTGGTATCGGGCTATTGTTGCTTCGACTAACATTACATAATAGGAGCGTAATTCTGGAGCAAAGGTTTCCTGTGCACCATCGTCCTTTCAATTCCGTCCCAACAACACTTCGTCTTATTCATGTTCTGGAGCTTGTGCTGCTAGTGGAAGTGAAGATTGCAATGTATACCTATATAATGTGTTGAGAAGTCGTAATGCAGACGCCGAGACAAGAAACAGTTCTTCTCCCAATAAACAAACATCTACGGGTGTTGTCACCATTTTACAGGGACATACGGCTCCAGTGCNNNNNNNNNNNNNNNNNNGGACGAGAATATGTTAGCGTCGGCAGATGAGAAGGGGCTCAGTATTATATGGCGAAGGCAGAAAAGTCTGAGGGGCAGTGAAGATGACCTCTCTGTAAGATCTAGTATTACATGAGCAAACACTTCGATCGAATTGTTTTTAAAACCACTTTTATTTTCTCTTTTCATCTCATATGGAAATATATG]

[-] EMBL CD060016             [TCAATCAGTTGAGAACACGAGCACACAGACTGATCCGATGGCTCAAGTCCCTACTGTACTACCAAAAACCACATTCGATGTTGTGACTCAATCTGGTACTGTCCACTGTGCACAGTCAGTTCAGACTATTCCAGAGGAACGACCAGTATTCCACACTGTCAATGTAGGAGTAGATCTTACTGGGAAATTACAGTCCGTATTACAACTTTGGCTTTTGAAAATGCAACGGGCAATTATTTGTGGGTAGGAACTGATCGAGGCATAATCCAATCCTATTTATGTGATCCATCAACAGGTTTTATTATGAGATCACAACGT GTCGATATATCATCACTGAATCTGTTTGTCGTTTCCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD081053             [                                                                                                                                                                                                                                                                                                                   GATCACAACGTNGTCGATATATCATCACTGAATCTGTCTGTCG TTCCAACCTGCCTTGAGAACGAAATAAAACTTGATGATTTGTTGCACGAAAGACCGCTTAGCACTCGGAAAACCTATCTCCTGTCTAAAGCAGATCAAAGTTTCAAAAGGTGGAGCAGTCTGAAGAGCCGAACACGTACGAATAGTGGGATAGTTAAGTTACGTAGTAGTGAAGGTACATCGTTAACGCCAAGCATAACTAGTCTTTCTATATATTCATGGCTATCCAAAGAAAAANNNNNNNNNNNNNNNNTGATCAATGCAGCTGGTATCGGGCTATTGTTGCTTCGACTAACATTACATAATAGGAGCGTAATTCTGGAGCAAAGGTTTCCTGTGCACCATCGTCCTTTCAATTCCGTCCCAACAACACTTCGTCTTATTCATGTTCTGGAGCTTGTGCTGCTAGTGGAAGTGAAGATTGCAATGTATACCTATATAATGTGTTGAGAAGTCGTAATGCAGACGCCGAGACAAGAAACAGTTCTTCTCCCAATAAACAAACATCTACGGGTGTTGTCACCATTTTACAGGGACATACGGCTCCAGTGCNNNNNNNNNNNNNNNNNNGGACGAGAATATGTTAGCGTCGGCAGATGAGAAGGGGCTCAGTATTATATGGCGAAGGCAGAAAAGTCTGAGGGGCAGTGAAGATGACCTCTCTGTAAGATCTAGTATTACATGAGCAAACACTTCGATCGAATTGTTTTTAAAACCACTTTTATTTTCTCTTTTCATCTCATATGGAAATATATG]
[-] EMBL CD161486             [                                                                                                                                                                                                                                                                                                                                   ATATATCATCACTGAATCTGTCTGTCG TTCCAACCTGCCTTGAGAACGAAATAAAACTTGATGATTTGTTGCACGAAAGACCGCTTAGCACTCGGAAAACCTATCTCCTGTCTAAAGCAGATCAAAGTTTCAAAAGGTGGAGCAGTCTGAAGAGCCGAACACGTACGAATAGTGGGATAGTTAAGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]


>consensus_8509#0 TCAATCAGTTGAGAACACGAGCACACAGACTGATCCGATGGCTCAAGTCCCTACTGTACT ACCAAAAACCACATTCGATGTTGTGACTCAATCTGGTACTGTCCACTGTGCACAGTCAGT TCAGACTATTCCAGAGGAACGACCAGTATTCCACACTGTCAATGTAGGAGTAGATCTTAC TGGGAAATTACAGTCCGTATTACAACTTTGGCTTTTGAAAATGCAACGGGCAATTATTTG TGGGTAGGAACTGATCGAGGCATAATCCAATCCTATTTATGTGATCCATCAACAGGTTTT ATTATGAGATCACAACGTGTCGATATATCATCACTGAATCTGTCTGTCGTTCCAACCTGC CTTGAGAACGAAATAAAACTTGATGATTTGTTGCACGAAAGACCGCTTAGCACTCGGAAA ACCTATCTCCTGTCTAAAGCAGATCAAAGTTTCAAAAGGTGGAGCAGTCTGAAGAGCCGA ACACGTACGAATAGTGGGATAGTTAAGTTACGTAGTAGTGAAGGTACATCGTTAACGCCA AGCATAACTAGTCTTTCTATATATTCATGGCTATCCAAAGAAAAANNNNNNNNNNNNNNN NTGATCAATGCAGCTGGTATCGGGCTATTGTTGCTTCGACTAACATTACATAATAGGAGC GTAATTCTGGAGCAAAGGTTTCCTGTGCACCATCGTCCTTTCAATTCCGTCCCAACAACA CTTCGTCTTATTCATGTTCTGGAGCTTGTGCTGCTAGTGGAAGTGAAGATTGCAATGTAT ACCTATATAATGTGTTGAGAAGTCGTAATGCAGACGCCGAGACAAGAAACAGTTCTTCTC CCAATAAACAAACATCTACGGGTGTTGTCACCATTTTACAGGGACATACGGCTCCAGTGC NNNNNNNNNNNNNNNNNNGGACGAGAATATGTTAGCGTCGGCAGATGAGAAGGGGCTCAG TATTATATGGCGAAGGCAGAAAAGTCTGAGGGGCAGTGAAGATGACCTCTCTGTAAGATC TAGTATTACATGAGCAAACACTTCGATCGAATTGTTTTTAAAACCACTTTTATTTTCTCT TTTCATCTCATATGGAAATATATG



consensusID : consensus_8509#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 566
fasta sequence
                              [CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAAACCAATCAGTGGACATCGCAATGCTTTGTTTTAATTAGACAGTCGGATTCCCCTGGTCCGTGCCAGTTCTGAGTTAGCCGTCGCGCGCCAGACCATGGAAGTACAGCCGCTTGACGCAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCACGACACTAACAGCTGAAACCGCCCACGATCGACCCGGGTCAGAATCCAGTAACCTCACCACAACGCGCACCGAAGCACACAAAGCAGCAAAGAAACCAGCCCCCAACTGGACCGACACGTATCTGATCTCGGCCTGTCTGACTCGGCCCCCAGAGCCAATCCTTCTCCCGAAGTTACGGATCCAATTTGCCGACTTCCCTTACCTACATTGTTCAATTGCCAGAGGCTGTTCACCTTGGAGACCTGCTGCGGATATGGGTACGGCCTGCCACGAAAATTATACTGCCTCGCTCGGATTTTCAAGGGCCGACAAGAGCGTTCCGGACACCACAAGAA]

[+] EMBL BG932000             [CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAAACCAATCAGTGGACATCGCAATGCTTTGTTTTAATTAGACAGTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL BF936419             [ CCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAAACCAATCAGTGGACATCGCAATGCTTTGTTTTAATTAGACAGTCGGATTCCCCTGGTCCGTGCCAGTTCTGAGTTAGCCGTCGCGCGCCAGACCATGGAAGTACAGCCGCTTGACGCAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCACGACACTAACAGCTGAAACCGCCCACGATCGACCCGGGTCAGAATCCAGTAACCTCACCACAACGCGCACCGAAGCACACAAAGCAGCAAAGAAACCAGCCCCCAACTGGACCGACACGTATCTGATCTCGGCCTGTCTGACTCGGCCCCCAGAGCCAATCCTTCTCCCGAAGTTACGGATCCAATTTGCCGACTTCCCTTACCTACATTGTTCAATTGCCAGAGGCTGTTCACCTTGGAGACCTGCTGCGGATATGGGTACGGCCTGCCACGAAAATTATACTGCCTCGCTCGGATTTTCAAGGGCCGACAAGAGCGTTCCGGACACCACAAGAA]
[+] EMBL BG931984             [ CCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAAACCAATCAGTGGACATCGCAATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]


>consensus_8509#1 CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG AAATCACATTGCGTCAAAACCAATCAGTGGACATCGCAATGCTTTGTTTTAATTAGACAG TCGGATTCCCCTGGTCCGTGCCAGTTCTGAGTTAGCCGTCGCGCGCCAGACCATGGAAGT ACAGCCGCTTGACGCAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCACGACACTAAC AGCTGAAACCGCCCACGATCGACCCGGGTCAGAATCCAGTAACCTCACCACAACGCGCAC CGAAGCACACAAAGCAGCAAAGAAACCAGCCCCCAACTGGACCGACACGTATCTGATCTC GGCCTGTCTGACTCGGCCCCCAGAGCCAATCCTTCTCCCGAAGTTACGGATCCAATTTGC CGACTTCCCTTACCTACATTGTTCAATTGCCAGAGGCTGTTCACCTTGGAGACCTGCTGC GGATATGGGTACGGCCTGCCACGAAAATTATACTGCCTCGCTCGGATTTTCAAGGGCCGA CAAGAGCGTTCCGGACACCACAAGAA



consensusID : consensus_8509#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 137
fasta sequence
                              [GTATTGTGATCGACGGAGGGTCTTCTTTCCCCGGTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC]

[+] EMBL BG930421             [GTATTGTGATCGACGGAGGGTCTTCTTTCCCCGGTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC]


>consensus_8509#2 GTATTGTGATCGACGGAGGGTCTTCTTTCCCCGGTGATTCTGCCAAGCCCGTTCCCTTGG CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC GTCACTAATTAGATGAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8509#1      ------------------------------------------------------------
consensus_8509#2      ------------------------------------------------------------
consensus_8509#0      TCAATCAGTTGAGAACACGAGCACACAGACTGATCCGATGGCTCAAGTCCCTACTGTACT 60
                                                                                  

consensus_8509#1      ------------------------------------------------------------
consensus_8509#2      ------------------------------------------------------------
consensus_8509#0      ACCAAAAACCACATTCGATGTTGTGACTCAATCTGGTACTGTCCACTGTGCACAGTCAGT 120
                                                                                  

consensus_8509#1      ------------------------------------------------------------
consensus_8509#2      ------------------------------------------------------------
consensus_8509#0      TCAGACTATTCCAGAGGAACGACCAGTATTCCACACTGTCAATGTAGGAGTAGATCTTAC 180
                                                                                  

consensus_8509#1      ------------------------------------------------------------
consensus_8509#2      ------------------------------------------------------------
consensus_8509#0      TGGGAAATTACAGTCCGTATTACAACTTTGGCTTTTGAAAATGCAACGGGCAATTATTTG 240
                                                                                  

consensus_8509#1      ------------------------------------------------------------
consensus_8509#2      ------------------------------------------------------------
consensus_8509#0      TGGGTAGGAACTGATCGAGGCATAATCCAATCCTATTTATGTGATCCATCAACAGGTTTT 300
                                                                                  

consensus_8509#1      ------------------------------------------------------------
consensus_8509#2      ------------------------------------------------------------
consensus_8509#0      ATTATGAGATCACAACGTGTCGATATATCATCACTGAATCTGTCTGTCGTTCCAACCTGC 360
                                                                                  

consensus_8509#1      ------------------------------------------------------------
consensus_8509#2      ------------------------------------------------------------
consensus_8509#0      CTTGAGAACGAAATAAAACTTGATGATTTGTTGCACGAAAGACCGCTTAGCACTCGGAAA 420
                                                                                  

consensus_8509#1      --------------------------------------------CCCGCCGTTTACCCGC 16
consensus_8509#2      ------------------------------------------------------------
consensus_8509#0      ACCTATCTCCTGTCTAAAGCAGATCAAAGTTTCAAAAGGTGGAGCAGTCTGAAGAGCCGA 480
                                                                                  

consensus_8509#1      GCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 76
consensus_8509#2      ------------------------------------------------------------
consensus_8509#0      ACACGTACGAATAGTGGGATAGTTAAGTTACGTAGTAGTGAAGGTACATCGTTAACGCCA 540
                                                                                  

consensus_8509#1      AAACCAATCAGTGGACATCGCAATGCTTTGTTTTAATTAGAC---AGTCGGATTCCCCTG 133
consensus_8509#2      ------------------------GTATTGTGATCGACGGAG---GGTCTTCTTTCCCCG 33
consensus_8509#0      AGCATAACTAGTCTTTCTATATATTCATGGCTATCCAAAGAAAAANNNNNNNNNNNNNNN 600
                                                 * *   *     **                   

consensus_8509#1      GT--CCGTGCCAGTTCTGAG---TTAGCCGTCGCG-CGCCAGACCATGGAAG-TACAGCC 186
consensus_8509#2      GTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA---TAGGGAC 90
consensus_8509#0      NTGATCAATGCAGCTGGTATCGGGCTATTGTTGCTTCGACTAACATTACATAATAGGAGC 660
                       *        **                 ** *   **    *   *  *   **    *

consensus_8509#1      G-----CTTGACGCAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCACGACACTAACA 241
consensus_8509#2      A-----GTGGGAATCTCGTT-AATCCATTCATGCGCGTCACTAATTAGATGAC------- 137
consensus_8509#0      GTAATTCTGGAGCAAAGGTTTCCTGTGCACCATCGTCCTTTCAATTCCGTCCCAACAACA 720
                             * *       **          *   **       *  *      *       

consensus_8509#1      GCTGAAACCGCCCACGATC---GACCCGGGTCAGAATCCAGTAACCTCACCACAACGCGC 298
consensus_8509#2      ------------------------------------------------------------
consensus_8509#0      CTTCGTCTTATTCATGTTCTGGAGCTTGTGCTGCTAGTGGAAGTGAAGATTGCAATGTAT 780
                                                                                  

consensus_8509#1      ACCGAAGCACACAAAGCAGCAAAGAAACCAGCCCCCAACTGGACCGACACGTATCTGATC 358
consensus_8509#2      ------------------------------------------------------------
consensus_8509#0      ACCTATATAATGTGTTGAGAAGTCGTAATGCAGACGCCGAGACAAGAAACAGTTCTTCTC 840
                                                                                  

consensus_8509#1      TCGGCCTGTCTGACTCGGCCCCCAGAGCCAATCCTTCTCCCGAAGTTACGGATCCAATTT 418
consensus_8509#2      ------------------------------------------------------------
consensus_8509#0      CCAATAAACAAACATCTACGGGTGTTGTCACCATTTTACAGGGACATACGGCTCCAGTGC 900
                                                                                  

consensus_8509#1      GCCGACTTCCCTTACCTACATTGTTCAATTGCCAGAGGCTGTTCACCTTGGAGACCTGCT 478
consensus_8509#2      ------------------------------------------------------------
consensus_8509#0      NNNNNNNNNNNNNNNNNNGGACGAGAATATGTTAGCGTCGGCAGATGAGAAGGGGCTCAG 960
                                                                                  

consensus_8509#1      GCGGATATGGGTACGGCCTGCCA-CGAAAATTATACTGCCTCGCTCGGATTTTCAAGGGC 537
consensus_8509#2      ------------------------------------------------------------
consensus_8509#0      TATTATATGGCGAAGGCAGAAAAGTCTGAGGGGCAGTGAAGATGACCTCTCTGTAAGATC 1020
                                                                                  

consensus_8509#1      CGACAAGAGCGTTCCGGACACCACAAGAA------------------------------- 566
consensus_8509#2      ------------------------------------------------------------
consensus_8509#0      TAGTATTACATGAGCAAACACTTCGATCGAATTGTTTTTAAAACCACTTTTATTTTCTCT 1080
                                                                                  

consensus_8509#1      ------------------------
consensus_8509#2      ------------------------
consensus_8509#0      TTTCATCTCATATGGAAATATATG 1104
                                              




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)