These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8510#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1070 fasta sequence [AGGCCAGAATAGGGCACGAGGCCAGGCCGACGTCGTGGTGGTGGTCCAAGTTTATCGGGTCTTCGTGATGGCCTGAAGCGTCGTTTATTCGATCCTCATTCTGTTCCTACCAAGCCCGATCCTAAGTTCGAGGTCAGCCGTTTGATACCTTTCTCCGTCCCTAAGGTTACTATTAACTCGTCTTTAAGCGATTCCAGCACTAACAACAATCCAGACGTAGTAAAAGATGATATTGATAGTTTGCAGATAAATTTGTTTGAGTTAACGGCCAAAATGGAAGCTGCATTTCGTTCTGGTCCATTTTATCACTCAGTTCCAGAGCTATCAGAAGGAGTCGATGTATCTTCTTTATTATCCAGTAACAGCTTAAATCTCAGAAAAAAATCACAAAATATGGTATCTCTTTTACATCTTTTGGTCTCTCATGAAATTAACCAGTGGTCTGATGAAGACAGGAACATAAAAGAACCTGATGATTTCTATCCCAAAGAACTTATTTCTCGAACCCGAATCAATTTAAAAAGTAATAGGCGTGCCACGCGAAAATCAAAATTGGCTTCCCAGCGTAGTAGGCAGTATTACAGCGATATTGATCAAGTTATAACTGACAGTTTCATCCAACAAGTTACTGAAACTCTCCCAGAAAATGACGAAGATGTAGAGAAAATCGATGTAAATAATAGTGAAAATGAAGATGCAGATTCAGAAGATGCTCGGTGGAATGGTGATGCTAATCAAGTTGATGAAATTGATGAACTTGATGATGATGAATTCGATAATGATTATTGTCAAGAATATTTTGACAATGGTGAAAAAGATTTTAGTGATGATGGTCGGGGTGG--TGGAGATGAGGACGGAGGAGGTGCTAAATATTATGAATAACAAATTTCTTCAAAAAATATTCTCTTTCTTTACATGAAACAATTTATTCTTTATGTATAAATGCTTGTAAAATAATACTACTTTCATATTGCATTATTTCTAAAAAGTCGATTACGATTTTATATTTCTAGATCTTTTCATATGTACCATTTATAAAAATCAAAAGAGATTTCCGACAAATCACACGT] [+] EMBL CD081354 [AGGCCAGAATAGGGCACGAGGCCAGGCCGACGTCGTGGTGGTGGTCCAAGTTTATCGGGTCTTCGTGATGGCCTGAAGCGTCGTTTATTCGATCCTCATTCTGTTCCTACCAAGCCCGATCCTAAGTTCGAGGTCAGCCGTTTGATACCTTTCTCCGTCCCTAAGGTTACTATTAACTCGTCTTTAAGCGATTCCAGCACTAACAACAATCCAGACGTAGTAAAAGATGATATTGATAGTTTGCAGATAAATTTGTTTGAGTTAACGGCCAAAATGGAAGCTGCATTTCGTTCTGGTCCATTTTATCACTCAGTTCCAGAGCTATCAGAAGGAGTCGATGTATCTTCTTTATTATCCAGTAACAGCTTAAATCTCAGAAAAAAATCACAAAATATGGTATCTCTTTTACATCTTTTGGTCTCTCATGAAATTAACCAGTGGTCTGATGAAGACAGGAACATAAAAGAACCTGATGATTTCTATCCCAAAGAACTTATTTCTCGAACCCGAATCAATTTAAAAAGTAATAGGCGTGCCACGCGAAAATCAAAATTGGCTTCCCAGCGTAGTAGGCAGTATTACAGCGATATTGATCAAGTTATAACTGACAGTTTCATCCAACAAGTTACTGAAACTCTCCCAGAAAATGACGAAGATGTAGA ] [+] EMBL CD135217 [ CAGAAGGAGTCGATGTATCTTCTTTATTATCCAGTAACAGCTTAAATCTCAGAAAAAAATCACAAAATATGGTATCTCTTTTACATCTTTTGGTCTCTCATGAAATTAACCAGTGGTCTGATGAAGACAGGAACATAAAAGAACCTGATGATTTCTATCCCAAAGAACTTATTTCTCGAACCCGAATCAATTTAAAAAGTAATAGGCGTGCCACGCGAAAATCAAAATTGGCTTCCCAGCGTAGTAGGCAGTATTACAGCGATATTGATCAAGTTATAACTGACAGTTTCATCCAACAAGTTACTGAAACTCTCCCAGAAAA ] [-] EMBL CD075186 [ GACAGGAACATAAAAGAACCTGATGATTTCTATCCCAAAGAACTTATTTCTCGAACCCGAATCAATTTAAAAAGTAATAGGCGTGCCACGCGAAAATCAAAATTGGCTTCCCAGCGTAGTAGGCAGTATTACAGCGATATTGATCAAGTTATAACTGACAGTTTCATCCAACAAGTTACTGAAACTCTCCCAGAAAATGACGAAGATGTAGAGAAAATCGATGTAAATAATAGTGAAAATGAAGATGCAGATTCAGAAGATGCTCGGTGGAATGGTGATGCTAATCAAGTTGATGAAATTGATGAACTTGATGATGATGAATTCGATAATGATTATTGTCAAGAATATTTTGACAATGGTGAAAAAGATTTTAGTGATGATGGTCTAGGTGG TGGAGATGAGGACGGAGGAGGTGCTAAATATTATGAATAACAAATTTCTTCAAAAAATATTCTCTTTCTTTACATGAAACAATTTATTCTTTATGTATAAATGCTTGTAAAATAATACTACTTTCATATTGCATTATTTCTAAAAAGTCGATTACGATTTTATATTTCTAGATCTTTTCATATGTACCATTTATAAAAATCAAAAGAGATTTCCGACAAATCACACGT] [+] EMBL CD148937 [ GTGATGCTAATCAAGTTGATGAAATTGATGAACTTGATGATGATGAATTCGATAATGATTATTGTCAAGAATATTTTGACAATGGTGAAAAAGATTTTAGTGATGATGGTCGGGGTGGCTTGGTGAgcgaaact ] [+] EMBL CD148920 [ GTGATGCTAATCAAGTTGATGAAATTGATGAACTTGATGATGATGAATTCGATAATGATTATTGTCAAGAATATTTTGACAATGGTGAAAAAGATTTTAGTGATGATGGTCGGG ] consensusID : consensus_8510#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 964 fasta sequence [ATTCCACTGCTTGGAGAAGCACCTTTCTGGTGCAGTTATTTGGACAGCCTTGTGGTCGAATGCGAACCAGATGTTACAACCATGTATGATGGTTATAAATTCATCACCCGTCAACAGCTAGCAGATTTGGGAATGTCAGAGCTCATCGGAACTCAGTTTCTGAGAGCTTACATGCACGGATATTTCATTTCTGCAAATCTGTACAACCAAGTACAAGACCATCTGGGGATTAATGAGAAATCTCTTACCCAAACTGTCAAGCCTAAATATCCTGACAACGTACCTAAAGCTTCATCGCGTTTTGAAAATATAATTGCAGAGTTCAACGAAGCCTCAGCCGACCAGCGCTTTTCCAAACTTTCAGATAATCCAAAGCTTACGTACAGTACTGTAGATGGCGATTCAGACCTCATTCAAATTCATCAAGCAAGATTGGAGAAGAAGCGCAGGCGTAAAGAACTGCAGAAAGAACGAGCTGCTCGAGCACAGGCTTTGGTTAATAAAGCCTCTAATGTGCATATATAAACTTCAAATGTTTTGTATCTAATTCTGTAAATAATGCCTTCAATAAGTTATGTTCTGAAAAATTTTCCGTGTTATTAGTTGTTAGTTCGCCTTATATGTTTTTCAGCATGAATCGAGGCCGACGTCGTGGTGGTGGTCCAAGTTTATCGGGTCTTCGTGATGGCGTGAAGCGTCGTTTATTCGATCCTCATTCTGTTCCTACCAAGCCCGATCCTAAGTTCGAGGTCAGCCGTTTGATACCTTTCTCCGTCCCTAAGGTTACTATTAACTCGTCTTTAAGCGATTCCAGCACTAACAACAATCCAGACGTAGTAAAAGATGATATTGATAGTTTGCAGATAAATTTGTTTGAGTTAACGGCCAAAATGGAAGCTGCATTTCGTTCTGGTCCATTTTATCACTCAGTTCCAGAGCTATCAGAAGGAGTCGATGTATCTTC] [-] EMBL CD073340 [ATTCCACTGCTTGGAGAAGCACCTTTCTGGTGCAGTTATTTGGACAGCCTTGTGGTCGAATGCGAACCAGATGTTACAACCATGTATGATGGTTATAAATTCATCACCCGTCAACAGCTAGCAGATTTGGGAATGTCAGAGCTCATCGGAACTCAGTTTCTGAGAGCTTACATGCACGGATATTTCATTTCTGCAAATCTGTACAACCAAGTACAAGACCATCTGGGGATTAATGAGAAATCTCTTACCCAAACTGTCAAGCCTAAATATCCTGACAACGTACCTAAAGCTTCATCGCGTTTTGAAAATATAATTGCAGAGTTCAACGAAGCCTCAGCCGACCAGCGCTTTTCCAAACTTTCAGATAATCCAAAGCTTACGTACAGTACTGTAGATGGCGATTCAGACCTCATTCAAATTCATCAAGCAAGATTGGAGAAGAAGCGCAGGCGTAAAGAACTGCAGAAAGAACGAGCTGCTCGAGCACAGGCTTTGGTTAATAAAGCCTCTAATGTGCATATATAAACTTCAAATGTTTTGTATCTAATTCTGTAAATAATGCCTTCAATAAGT ] [-] EMBL CD097828 [ AAAGCCTCTAATGTGCATATATAAACTTCAAATGTTTGGTATCTAATTCTGTAAATAATGCCTTCAATAAGTTATGTTCTGAAAAATTTTCCGTGTTATTAGTTGTTAGTTCGCCTTATATGTTTTTCAGCATGAATCGAGGCCGACGTCGTGGTGGTGGTCCAAGTTTATCGGGTCTTCGTGATGGCGTGAAGCGTCGTTTATTCGATCCTCATTCTGTTCCTACCAAGCCCGATCCTAAGTTCGAGGTCAGCCGTTTGATACCTTTCTCCGTCCCTAAGGTTACTATTAACTCGTCTTTAAGCGATTCCAGCACTAACAACAATCCAGACGTAGTAAAAGATGATATTGATAGTTTGCAGATAAATTTGTTTGAGTTAACGGCCAAAATGGAAGCTGCATTTCGTTCTGGTCCATTTTATCACTCAGTTCCAGAGCTATCAGAAGGAGTCGATGTATCTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8510#0 AGGCCAGAATAGGGCACGAGGCCAGGCCGACGTCGTGGTGGTGGTCCAAGTTTATCGGGT 60 consensus_8510#1 -------------------------------------------------ATTCCACTGCT 11 ** * * * consensus_8510#0 CTTCGTGATGGCCTGAAGCGTCGTTTATTCGATCCTCATTCTGTTCCTAC-CAAGCCCGA 119 consensus_8510#1 TGGAGAAGCACCTTTCTGGTGCAGTTATTTGGACAGCCTTGTGGTCGAATGCGAACCAGA 71 * * * * * ***** * * * ** ** ** * * * ** ** consensus_8510#0 TCCTAAGTTCGAGGTCAGCCGTTTGATACCTTTCTCCGTCCCTAAGGTTACTATTAACTC 179 consensus_8510#1 TGTTACAACCATGTATGATGGTTATAAA---TTCATCACCCGTCA----ACAGCTAGCAG 124 * ** * * *** * * *** * ** * * ** ** * consensus_8510#0 GTCTTTAAGCGATTCCAGCACTAACAACAATCCAGACGTAGTAAAAGATGATATTGATAG 239 consensus_8510#1 ATTT---GGGAATGTCAGAGCTCATCGGAACTCAG--TTTCTGAGAGCTTACATGCACGG 179 * * * ** *** ** * ** *** * * * ** * * ** * * consensus_8510#0 TTTGCAGATAAATTTGTTTGAGTTAACGGCCAAAATGGAAGCTGCATTTCGTTCTGGTCC 299 consensus_8510#1 ATATTTCAT--TTCTGCAAATCTGTACAACCAAGTACAAGAC--CATCTGG----GGATT 231 * ** * ** * ** **** * * *** * * ** consensus_8510#0 ATTTTATCACTCAGTTCCAGAGCTATCAGAAGGAGTCGATGTATCTTCTTTAT-TATCCA 358 consensus_8510#1 AATGAGAAATCTCTTACCCAAACTGTCA-----AGCCTAAATATCCTGACAACGTACCTA 286 * * * * ** * ** *** ** * * **** * * ** * * consensus_8510#0 GTAACAGCTTAAATCTCAGAAAAA-AATCACAAAATATGGTATCTCTTTTACATCTTTTG 417 consensus_8510#1 AAGCTTCATCGCGTTTTGAAAATATAATTGCAGAGTTCAACGAAGCCTCAGC--CGACCA 344 * * * *** * *** ** * * * * * * consensus_8510#0 GTCTCTCATGAAATTAACCAGTGGTCTGATGAAGACAGGAACATAAAAGAACCTGATGAT 477 consensus_8510#1 GCGCTTTTCCAAACTTTCAGATAATCCAA--AGCTTACGTACAGTACTGTAGATGGCGAT 402 * * *** * * * ** * * * * *** * * * ** *** consensus_8510#0 TTCTATCCCAAAGAACTTATTTCTCGAACCCGAATCAATTTAAAAAGTAATAGGCGTGCC 537 consensus_8510#1 TCAGACCTCATTCAA---ATTCATCAAGCAAGATTGGA---GAAGAAGCGCAGGCGTAAA 456 * * * ** ** *** ** * * ** * * ** * ****** consensus_8510#0 ACGCGAAAATCAAAATTGGCTTCCC-AGCGTAGTAGGCAGT--ATTACAGCGATATTGAT 594 consensus_8510#1 GAACTGCAGAAAGAACGAGCTGCTCGAGCACAGGCTTTGGTTAATAAAGCCTCTAATGTG 516 * * * ** *** * * *** ** ** ** * * ** ** consensus_8510#0 CAAGTTATAACTGACAGTTTCATCCAACAAGTTACTGAAACTCTCCCAGAAAATGACGAA 654 consensus_8510#1 CATATATAAACTTCAAATGTTTTGTATCTAATT-CTGTAAATAATGCCTTCAATAAGTTA 575 ** * **** * * * * * * * ** *** ** * * *** * * consensus_8510#0 GATGTAGAGAAAATCGATGTAAATAATAGTGAAAATGAAGATGCAGATTCAGAAGATGCT 714 consensus_8510#1 TGTTCTGAAAAATTTTCCGTGT-TATTAGT-----TGTTAGTTC-GCCTTATATGTTTTT 628 * ** *** * ** ** **** ** * * * * * * * * * consensus_8510#0 CGGTG-GAATGGTGATGCTAATCAAGTTGATGAAATTGATGAACTTGATGATGATGAATT 773 consensus_8510#1 CAGCATGAATCGAGGCCGACGTCGTGGTGGTGGTCCAAGTTTATCGGGTCTTCGTGA--- 685 * * **** * * ** * ** ** * * * * * *** consensus_8510#0 CGATAATGATTATTGTCAAGAATATTTTGACAATGGTGAAAAAGATTTTAGTGATGATGG 833 consensus_8510#1 TGGCGTGAAGCGTCGTTTATTCGATCCTCATTCTGTTCCTACCAAGCCCGATCCTAA-GT 744 * * * ** * ** * * ** * * * * * * * consensus_8510#0 TCGGGGTGGTGGAGATGAGGACGGAGGAGGTGCTAAATATTATGAATAACAAATTTCTTC 893 consensus_8510#1 TCGAGGTCAGCCGTTTGATACCTTTCTCCGTCCCTAAGGTTACTATTAAC--TCGTCTTT 802 *** *** *** * ** * ** *** * **** **** consensus_8510#0 AAAAAATATTCTCTTTCTTTACATGAAACAATTTATTCTTTATGTATAA--ATGCTTGTA 951 consensus_8510#1 AAGCGAT-------TCCAGCACTAACAACAATCCAGACGTAGTAAAAGATGATATTGATA 855 ** ** * * ** ****** * * * * * * ** * ** consensus_8510#0 AAATAATACTACTTTCATATTGCATTATTTCTAAAAAGTCGATTACGATTTTATATTTCT 1011 consensus_8510#1 GTTTGCAGATAAATTTGTTTGAGTTAACGGCCAAAATGGAAGCTGC-ATTTCG---TTCT 911 * ** ** * * * * * **** * * * **** **** consensus_8510#0 AGATCTTTTCATATGTACCATTTATAAAAATCAAAAGAGATTTCCGACAAATCACACGT 1070 consensus_8510#1 GGTCCATTTTATCACTCAGTTCCAGAGCTATCAGAAGGAGT---CGATGTATCTTC--- 964 * * *** ** * * * * **** *** * *** *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||