These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8514#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 689 fasta sequence [AGACCAGTAAGTGCAGATGCAGATGTTCTGTTAGGTGGAATGTCGAAAACCAAGAAAACAGATAGAATGCAGAACTTTTCAAATTTAAATCATGTTATGCCATCACGAATGACTACTTCACAATATACTCTTGGACGCGATCCAGGAAATAAATCACGTGGTTCTAATGGGAATAAAAGCACCGGTGTTCTTTCCAATCAAACTCGAGTGAAAAATAATCGAATCGATCCTAACCAAAATCCTGACTGTATTGGTAGTGCTATCCAACCACCCTCTCCAGATGTTCTTCTGGCTTTGTTTGATTTAGTCAACAAACTTTTAGTTCCTTATGGTAATTCAGTCCTCACATGTCCTGAGATCACAGCTCCAACTGCATTTCTACGCTTGTTATGTATATTGTTAAAATGTGCTTCTCAAGATTGCTATACTTTA-AAGTATTCATCTTCAAATAATACATTGGTCACATCAAATTCACCTTATCATGCAAATTCTTCAAAACATATAGACAGTTATGATTCTACTAAAGAGTTTATTCAACAACTGATATCAGATGAAACACATTTGTTTATTACAAACTTTTCTACTTATGGTTTAGATATTTCTTTAGTACGTTTATTAGCTTCACAACTTTTATCATCAACCTCATCATCACCATC-GTCAATGTCACTGTCATCACATGCTTCGTTGGC] [-] EMBL CD066948 [AGACCAGTAAGTGCAGATGCAGATGTTCTGTTAGGTGGAATGTCGAAAACCAAGAAAACAGATAGAATGCAGAACTTTTCAAATTTAAATCATGTTATGCCATCACGAATGACTACTTCACAATATACTCTTGGACGCGATCCAGGAAATAAATCACGTGGTTCTAATGGGAATAAAAGCACCGGTGTTCTTTCCAATCAAACTCGAGTGAAAAATAATCGAATCGATCCTAACCAAAATCCTGACTGTATTGGTAGTGCTATCCAACCACCCTCTCCAGATGTTCTTCTGGCTTTGTTTGATTTAGTCAACAAACTTTTAGTTCCTTATGGTAATTCAGTCCT ] [+] EMBL CD066883 [ GAATGCAAAACTTTTCAAATTTAAATCATGTTATGCCATCACGAATGACTACTTCACAATATACTCTTGGACGCGATCCAGGAAATAAATCACGTGGTTCTAATGGGAATAAAAGCACCGGTGTTCTTTCCAATCAAACTCGAGTGAAAAATAATCGAATCGATCCTAACCAAAATCCTGACTGTATTGGTAGTGCTATCCAACCACCCTCTCCAGATGTTCTTCTGGCTTTGTTTGATTTAGTCAACAAACTTTTAGTTCCTTATGGTAATTCAG ] [+] EMBL CD068535 [ TAAATCACGTGGTTCTAATGGGAATAAAAGCACCGGTGTACTTTCCAATCAAACTCGAGTGAAACATAATCGAATCGATCCTAACCAAAATCCTGACTGTATTGGTAGTGCTATCCAAGCACCCTCTACAGATGTTCTTCTGGCTTTGTTTGATATAGTCAACAAAATTTTAGTTCCTTATGGTAATTCAGTCCTCACATGTCCTGAGATCACAGCTCCAACTGCATTTCTACGCTTGTGATGTATATCGTCAAAATGTGGTTCTCAAGATTGCTATACTTGACAAGTATTCATCTTCAAATAATACATTGCTCACATCAAATTCACCTTATCATGCACATTCTTCAAAACATATAGACAGc ] [+] EMBL CD114670 [ TGTTATGTATATTGTTAAAATGTGCTTCTCAAGATTGCTATACTTTA AAGTATTCATCTTCAAATAATACATTGGTCACATCAAATTCACCTTATCATGCAAGTTCTTCAAAACATATAGACAGTTATGATTCTACTAAAGAGTTTATTCAACAACTGATATCAGATGAAACACATTTGTTTATTACAAACTTTTCTACTTATGGTTTAGATATTTCTTTAGTACGTTTATTAGCTTCACAACTTTTATCATCAACCTCATCATCACCATC GTCAATGTCACTGTCATCACATGCTTCGTTGG ] [-] EMBL CD114791 [ GTTATGTATATTGTTAAAATGTGCTTCTCAAGATTGCTATACTTTA AAGTATTCATCTTCAAATAATACATTGGTCACATCAAATTCACCTTATCATGCAAATTCTTCAAAACATATAGACAGTTATGATTCTACTAAAGAGTTTATTCAACAACTGATATCAGATGAAACACATTTGTTTATTACAAACTTTTCTACTTATGGTTTAGATATTTCTTTAGTACGTTTATTAGCTTCACAACTTTTATCATCAACCTCATCATCACCATCAGTCAATGTCACTGTCATCACATGCTTCGTTGGC] [-] EMBL CD114767 [ GTTATGTATATTGTTAGAATGTGCTTCTCAAGATTGCTATACTTTA AAGTATTCATCTTCAAATAATACATTGGTCACATCAAATTCACCTTATCATGCAAATTCTTCAAAACATATAGACAGTTATGATTCTACTAAAGAGTTTATTCAACAACTGATATCAGATGAAACACATTTGTTTATTACAAACTTTTCTACTTATGGTTTAGATATTTCTTTAGTACGTTTTTTAGCTTCACAACTTTTATCATCAACCTCATCATCACCATC GTCAATGTCACTGTCATCACATGCTTCGTTGGC] consensusID : consensus_8514#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence [GTTATGTATATTGTTAAAATGTGCTTCTCAAGATTGCTATACTTTAAAGTATTCATCTTCAAATAATACATTGGTCACCTCGAATTCACCTTATCATGCAAATTCTTCAAAACATATAGACACTTATGATTATACTCAAGAGATTATTCCACCACTGATACCAGATGAAACACATTTGGTTATTACGAACTTTTCTAATTATGGTTTAGATATTTGTGTAGTACGTTTATTAGCTTCACAACTTTGATCATCAACCTCATAATCACGATAGTGAATGTAGCTGTACATCACAGGTTCGTAGGC] [-] EMBL CD114833 [GTTATGTATATTGTTAAAATGTGCTTCTCAAGATTGCTATACTTTAAAGTATTCATCTTCAAATAATACATTGGTCACCTCGAATTCACCTTATCATGCAAATTCTTCAAAACATATAGACACTTATGATTATACTCAAGAGATTATTCCACCACTGATACCAGATGAAACACATTTGGTTATTACGAACTTTTCTAATTATGGTTTAGATATTTGTGTAGTACGTTTATTAGCTTCACAACTTTGATCATCAACCTCATAATCACGATAGTGAATGTAGCTGTACATCACAGGTTCGTAGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8514#0 AGACCAGTAAGTGCAGATGCAGATGTTCTGTTAGGTGGAATGTCGAAAACCAAGAAAACA 60 consensus_8514#1 ------------------------------------------------------------ consensus_8514#0 GATAGAATGCAGAACTTTTCAAATTTAAATCATGTTATGCCATCACGAATGACTACTTCA 120 consensus_8514#1 ------------------------------------------------------------ consensus_8514#0 CAATATACTCTTGGACGCGATCCAGGAAATAAATCACGTGGTTCTAATGGGAATAAAAGC 180 consensus_8514#1 ------------------------------------------------------------ consensus_8514#0 ACCGGTGTTCTTTCCAATCAAACTCGAGTGAAAAATAATCGAATCGATCCTAACCAAAAT 240 consensus_8514#1 ------------------------------------------------------------ consensus_8514#0 CCTGACTGTATTGGTAGTGCTATCCAACCACCCTCTCCAGATGTTCTTCTGGCTTTGTTT 300 consensus_8514#1 ------------------------------------------------------------ consensus_8514#0 GATTTAGTCAACAAACTTTTAGTTCCTTATGGTAATTCAGTCCTCACATGTCCTGAGATC 360 consensus_8514#1 ------------------------------------------------------------ consensus_8514#0 ACAGCTCCAACTGCATTTCTACGCTTGTTATGTATATTGTTAAAATGTGCTTCTCAAGAT 420 consensus_8514#1 --------------------------GTTATGTATATTGTTAAAATGTGCTTCTCAAGAT 34 ********************************** consensus_8514#0 TGCTATACTTTAAAGTATTCATCTTCAAATAATACATTGGTCACATCAAATTCACCTTAT 480 consensus_8514#1 TGCTATACTTTAAAGTATTCATCTTCAAATAATACATTGGTCACCTCGAATTCACCTTAT 94 ******************************************** ** ************ consensus_8514#0 CATGCAAATTCTTCAAAACATATAGACAGTTATGATTCTACTAAAGAGTTTATTCAACAA 540 consensus_8514#1 CATGCAAATTCTTCAAAACATATAGACACTTATGATTATACTCAAGAGATTATTCCACCA 154 **************************** ******** **** ***** ****** ** * consensus_8514#0 CTGATATCAGATGAAACACATTTGTTTATTACAAACTTTTCTACTTATGGTTTAGATATT 600 consensus_8514#1 CTGATACCAGATGAAACACATTTGGTTATTACGAACTTTTCTAATTATGGTTTAGATATT 214 ****** ***************** ******* ********** **************** consensus_8514#0 TCTTTAGTACGTTTATTAGCTTCACAACTTTTATCATCAACCTCATCATCACCATCGTCA 660 consensus_8514#1 TGTGTAGTACGTTTATTAGCTTCACAACTTTGATCATCAACCTCATAATCACGATAGTGA 274 * * *************************** ************** ***** ** ** * consensus_8514#0 ATGTCACTGT-CATCACATGCTTCGTTGGC 689 consensus_8514#1 ATGTAGCTGTACATCACA-GGTTCGTAGGC 303 **** **** ******* * ***** *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||