cluster # 8520

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Schistosoma mansoni
cluster # 8520 cluster # 8520 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8520#0 length = 702 sequences # 3

consensus_8520#1 length = 692 sequences # 3
consensus_8520#2 length = 319 sequences # 1

consensusID : consensus_8520#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 702
fasta sequence

                              [CGAGGCCAGAATCGGCACGAGGAATTTATATCCAGAGTATAAAGATGATGGATGAATAACATCTTTATATCCATATTTCAAAACTACTTATTTATTCGATGAGTAGTACAACTAGAAGGAATTGGAATGAATTGAGCAGAACAAGGTTGAATGGATAATGCTGGTAGGCAGCCTATACTCCTCCACGAAGAGTAACAGGAGTAAGTGA----CATTTCAACAGTTTTATTAAATCATGAAACTCCAACTTGAATCCACTTTGATTTGAACCAACTGAATTAATTTCAATGAAAGTAGTTGTAAAAATTTTCATAGTTTTTTCTCATTTAATTTACTTTTCTTCTTTTCGGTTTTCATAAACCATCCAGTTACTCTCTACATTACAACCAGCTATATTTTACCAATATATGTCACCACCAGCACCATCACATATCTTGATTGTTTTTGTAAATGATCTCACTGAAATACTCAATGGATCATCTTTTTGTTTCATGCGAATACATCAAAATCGCTTTAATATTACAATAATGCAGTACATATTGTTATAGCTGGATGTTGTTTGATCCAAACATTTCACACCATTGAACACATTTGAACTAATTGAAGTGAATTGTGAAACATGCATAATATATGTATCATAATGTTAAAATACTTGTATACATAAACAATTCCAATGTTCCTACAAAAATTAGGAATCGAAATTAGC]

[+] EMBL CD083697             [CGAGGCCAGAATCGGCACGAGGAATTTATATCCAGAGTATAAAGATGATGGATGAATAACATCTTTATATCCATATTTCAAAACTACTTATTTATTCGATGAGTAGTACAACTAGAAGGAATTGGAATGAATTGAGCAGAACAAGGTTGAATGGATAATGCTGGTAGGCAGCCTATACTCCTCCACGAAGAGTAACAGGAGTAAGTGA    CATTTCAACAGTTTTATTAAATCATGAAACTCCAACTTGAATCCACTTTGATTTGAACCAACTGAATTAATTTCAATGAAAGTAGTTGTAAAAATTTTCATAGTTTTTTCTCATTTAATTTACTTTTCTTCTTTTCGGTTTTCATAAACCATCCAGTTACTCTCTACATTACAACCAGCTATATTTTACCAATATATGTCACCACCAGCACCATCACATATCTTGATTGTTTTTGTAAATGATCTCACTGAAATACTCAATGGATCATCTTTTTGTTTCATGCGAATACATCAAAATCGCTTTAATATTACAATAATGCAGTACATATTGTTATAG                                                                                                                                                              ]
[+] EMBL CD083974             [                        TTTATATCCAGAGTATAAAGATGATGGATGAATAACATCTTTATATCCATATTTCAAAACTACTTATTTATTCGATGAGTAGTACAACTAGAAGGAATTGGAATGAATTGAGCAGAACAAGGTTGAATGGATAATGCTGGTAGGCAGCCTATACTCCTCCACGAAGAGTAACAGGAGTAAGTGA    CATTTCAACAGTTTTATTAAATCATGAAACTCCAACTTGAATCCACTTTGATTTGAACCAACTGAATTAATTTCAATGAAAGTAGTTGTAAAAATTTTCATAGTTTTTTCTCATTTAATTTACTTTTCTTCTTTTCGGTTTTCATAAACCATCCAGTTACTCTCTACATTACAACCAGCTATATTTTACCAATATATGTCACCACCAGCACCATCACATATCTTGATTGTTTTTGTAA                                                                                                                                                                                                                                                                ]
[-] EMBL CD075544             [                                     TATAAAGATGATGGATGAATAACATCTTTATATCCATATTTCAAAACTACTTATTTATTCGATGAGTAGTACAACTAGAAGGAATTGGAATGAATTGAGCAGAACAAGGTTGAATGGATAATGCTGGTAGGCAGCCTATACTCCTCCACGAAGAGTAACAGGAGTAAGTGAGTAGCATTTCAACAGTTTTATTAAATCATGAAACTCCAACTTGAATCCACTTTGATTTGAACCAACTGAATTAATTTCAATGAAAGTAGTTGTAAAAATTTTCATAGTTTTTTCTCATTTAATTTACTTTTCTTCTTTTCGGTTTTCATAAACCATCCAGTTACTCTTTACATTACAACCAGCTATATTTTACCAATATATGTCACCACCAGCACCATCACATATCTTGATTGTTTTTGTAAATGATCTCACTGAAATACTCAATGGATCATCTTTTTGTTTCATGCGAATACATCAAAATCGCTTTAATATTACAATAATGCAGTACATATTGTTATAGCTGGATGTTGTTTGATCCAAACATTTCACACCATTGAACACATTTGAACTAATTGAAGTGAATTGTGAAACATGCATAATATATGTATCATAATGTTAAAATACTTGTATACATAAACAATTCCAATGTTCCTACAAAAATTAGGAATCGAAATTAGC]




>consensus_8520#0
CGAGGCCAGAATCGGCACGAGGAATTTATATCCAGAGTATAAAGATGATGGATGAATAAC
ATCTTTATATCCATATTTCAAAACTACTTATTTATTCGATGAGTAGTACAACTAGAAGGA
ATTGGAATGAATTGAGCAGAACAAGGTTGAATGGATAATGCTGGTAGGCAGCCTATACTC
CTCCACGAAGAGTAACAGGAGTAAGTGACATTTCAACAGTTTTATTAAATCATGAAACTC
CAACTTGAATCCACTTTGATTTGAACCAACTGAATTAATTTCAATGAAAGTAGTTGTAAA
AATTTTCATAGTTTTTTCTCATTTAATTTACTTTTCTTCTTTTCGGTTTTCATAAACCAT
CCAGTTACTCTCTACATTACAACCAGCTATATTTTACCAATATATGTCACCACCAGCACC
ATCACATATCTTGATTGTTTTTGTAAATGATCTCACTGAAATACTCAATGGATCATCTTT
TTGTTTCATGCGAATACATCAAAATCGCTTTAATATTACAATAATGCAGTACATATTGTT
ATAGCTGGATGTTGTTTGATCCAAACATTTCACACCATTGAACACATTTGAACTAATTGA
AGTGAATTGTGAAACATGCATAATATATGTATCATAATGTTAAAATACTTGTATACATAA
ACAATTCCAATGTTCCTACAAAAATTAGGAATCGAAATTAGC

consensusID : consensus_8520#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 692
fasta sequence

                              [GCCTTTAATTCGGCACGCAGGGTATAAANGATGATGGATGAATAACATCTTTATATCCATATTTCAAAACTACTTATTTATTCGATGAGTAGTACAACTAGAAGGAATTGGAATGAATTGAGCAGAACAAGGTTGAATGGATAATGCTGGTAGGCAGCCTATACTCCTCCACGAAGAGTAACAGGAGTAAGTGAGTAGCATTTCAACAGTTTTATTAAATCATGAAACTCCAACTTGAATCCACTTTGATTTGAACCAACTGAATTAATTTCAATGAAAGTAGTTGTAAAAATTTTCATAGTTTTTTCTCATTTAATTTACTTTTCTTCTTTTCGGTTTTCATAAACCATCCAGTTACTCTCTACATTACAACCAGCTATATTTTACCAATATATGTCACCACCAGCACCATCACATATCTTGATTGTTTTTGTAAATGATCTCACTGAAATACTCAATGGATCATCTTTTTGTTTCATGCGAATACATCAAAATCGCTTTAATATTACAATAATGCAGTACATATTGTTATAGCTGGATGTTGTTTGATCCAAACATTTCACACCATTGAACACATTTGAACTAATTGAAGTGAATTGTGAAACATGCATAATATATGTATCATATTGTTAAAATACTTGTATACATAAACAATTCCAATGTTCCTACAAAAATTATATAAACGAAATTAG]

[+] EMBL CD081813             [GCCTTTAATTCGGCACGCAGGGTATAAANGATGATGGATGAATAACATCTTTATATCCATATTTCAAAACTACTTATTTATTCGATGAGTAGTACAACTAGAAGGAATTGGAATGAATTGAGCAGAACAAGGTTGAATGGATAATGCTGGTAGGCAGCCTATACTCCTCCACGAAGAGTAACAGGAGTAAGTGAGTAGCATTTCAACAGTTTTATTAAATCATGAAACTCCAACTTGAATCCACTTTGATTTGAACCAACTGAATTAATTTCAATGAAAGTAGTTGTAAAAATTTTCATAGTTTTTTCTCATTTAATTTACTTTTCTTCTTTTCGGTTTTCATAAACCATCCAGTTACTCTCTACATTACAACCAGCTATATTTTACCAATATATGTCACCACCAGCACCATCACATATCTTGATTGTTTTTGTAAATGATCTCACTGAAATACTCAATGGATCATCTTTTTGTTTCATGCGAATACATCAAAATCGCTTTAATATTACAATAATGCAGTACATATTGTTATAGCTGGATGTTGTTTGATCCAAACATTTCACACCATTGAACACATTTGAACTAATTGAAGTGAATTGTGAAACATGCATAATATATGTATCATATTGTTAAAATACTTGTATACATAAACAATTCCAATGTTCCTACAAAAATTATATAAACGAAATTAG]
[+] EMBL CD077851             [         ttatatacCAGAGTATAAA GATGATGGATGAATAACATCTTTATATCCATATTTCAAAACTACTTATTTATTCGATGAGTAGTACAACTAGAAGGAATTGGAATGAATTGAGCAGAACAAGGTTGAATGGATAATGCTGGTAGGCAGCCTATACTCCTCCACGAAGAGTAACAGGAGTAAGTGAGTAGCATTTCAACAGTTTTATTAAATCATGAAACTCCAACTTGAATCCACTTTGATTTGAACCAACTGAATTAATTTCAATGAAAGTAGTTGTA                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AW017434             [                                                      ATCCATATTTCAAAACTACTTATTTATTCGATGAGTAGTACAACTAGAAGGAATTGGAATGAATTGAGCAGAACAAGGTTGAATGGATAATGCTGGTAGGCAGCCTATACTCCTCCACGAAGAGTAACAGGAGTAAGTGAGTAGCATTTCAACAGTTTTATTAAATCATGAAACTCCAACTTGAATCCACTTTGATTTGAACCAACTGAATTAATTTCAATGAAAGTAGTTGTAAAAATTTTCATAGTTTTTTCTCATTTAATTTACTTTTCTTCTTTTCGGTTTTCATAAACCATCCAGTTACTCTCTACATTACAACCAGCTATATTTTACCAATATATGTCACCACCAGCACCATCACATATCTTGATTGTTTTTGTAAATGATCTCACTGAAATACTCAATGGATCATCTTTTTGTTTCATGCGAATACATCAAAATCGCTTTAATATTACAATAATGCAGTACATATTGTTATAGTTGGATGTTGTTTGATCCAAACATTTCACACCATTGAACACATTTGAACTAATTGAAGTGAATTGTGAAACATGCATAATATATG                                                                         ]




>consensus_8520#1
GCCTTTAATTCGGCACGCAGGGTATAAANGATGATGGATGAATAACATCTTTATATCCAT
ATTTCAAAACTACTTATTTATTCGATGAGTAGTACAACTAGAAGGAATTGGAATGAATTG
AGCAGAACAAGGTTGAATGGATAATGCTGGTAGGCAGCCTATACTCCTCCACGAAGAGTA
ACAGGAGTAAGTGAGTAGCATTTCAACAGTTTTATTAAATCATGAAACTCCAACTTGAAT
CCACTTTGATTTGAACCAACTGAATTAATTTCAATGAAAGTAGTTGTAAAAATTTTCATA
GTTTTTTCTCATTTAATTTACTTTTCTTCTTTTCGGTTTTCATAAACCATCCAGTTACTC
TCTACATTACAACCAGCTATATTTTACCAATATATGTCACCACCAGCACCATCACATATC
TTGATTGTTTTTGTAAATGATCTCACTGAAATACTCAATGGATCATCTTTTTGTTTCATG
CGAATACATCAAAATCGCTTTAATATTACAATAATGCAGTACATATTGTTATAGCTGGAT
GTTGTTTGATCCAAACATTTCACACCATTGAACACATTTGAACTAATTGAAGTGAATTGT
GAAACATGCATAATATATGTATCATATTGTTAAAATACTTGTATACATAAACAATTCCAA
TGTTCCTACAAAAATTATATAAACGAAATTAG

consensusID : consensus_8520#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 319
fasta sequence

                              [TGTCCCCACCAGCACAATCACCTCCACCATCACATATCTTGACTGTTTTTGTAAATGATTTCACTGAAATACTCAATGGATCATCTTTTTGTTTAATGCGAATACATCAAAATCGCTCTAATATTACAATAATGCACTACATATTGTTATAGCTGGATGTTGTTTGATCCAAACATTTCACACCATTGAACACATTTGAACTAATTGAAGTGAATTGTGAAACATGCATAATATATGTATCATATTGTTAAAATACTTGTATACATAAACAATTCCAATGTTCCTATAAAGATTATATAANCGGAAAAAAAAAAAAAAA]

[-] EMBL AI395629             [TGTCCCCACCAGCACAATCACCTCCACCATCACATATCTTGACTGTTTTTGTAAATGATTTCACTGAAATACTCAATGGATCATCTTTTTGTTTAATGCGAATACATCAAAATCGCTCTAATATTACAATAATGCACTACATATTGTTATAGCTGGATGTTGTTTGATCCAAACATTTCACACCATTGAACACATTTGAACTAATTGAAGTGAATTGTGAAACATGCATAATATATGTATCATATTGTTAAAATACTTGTATACATAAACAATTCCAATGTTCCTATAAAGATTATATAANCGGAAAAAAAAAAAAAAA]




>consensus_8520#2
TGTCCCCACCAGCACAATCACCTCCACCATCACATATCTTGACTGTTTTTGTAAATGATT
TCACTGAAATACTCAATGGATCATCTTTTTGTTTAATGCGAATACATCAAAATCGCTCTA
ATATTACAATAATGCACTACATATTGTTATAGCTGGATGTTGTTTGATCCAAACATTTCA
CACCATTGAACACATTTGAACTAATTGAAGTGAATTGTGAAACATGCATAATATATGTAT
CATATTGTTAAAATACTTGTATACATAAACAATTCCAATGTTCCTATAAAGATTATATAA
NCGGAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8520#0      CGAGGCCAGAATCGGCACGAGGAATTTA-TATCCAGAGTATAAAG-ATGATGGATGAATA 58
consensus_8520#1      ----------------GCCTTTAATTCGGCACGCAGGGTATAAANGATGATGGATGAATA 44
consensus_8520#2      ------------------------------------------------------------
                                                                                  

consensus_8520#0      ACATCTTTATATCCATATTTCAAAACTACTTATTTATTCGATGAGTAGTACAACTAGAAG 118
consensus_8520#1      ACATCTTTATATCCATATTTCAAAACTACTTATTTATTCGATGAGTAGTACAACTAGAAG 104
consensus_8520#2      ------------------------------------------------------------
                                                                                  

consensus_8520#0      GAATTGGAATGAATTGAGCAGAACAAGGTTGAATGGATAATGCTGGTAGGCAGCCTATAC 178
consensus_8520#1      GAATTGGAATGAATTGAGCAGAACAAGGTTGAATGGATAATGCTGGTAGGCAGCCTATAC 164
consensus_8520#2      ------------------------------------------------------------
                                                                                  

consensus_8520#0      TCCTCCACGAAGAGTAACAGGAGTAAGTGA----CATTTCAACAGTTTTATTAAATCATG 234
consensus_8520#1      TCCTCCACGAAGAGTAACAGGAGTAAGTGAGTAGCATTTCAACAGTTTTATTAAATCATG 224
consensus_8520#2      ------------------------------------------------------------
                                                                                  

consensus_8520#0      AAACTCCAACTTGAATCCACTTTGATTTGAACCAACTGAATTAATTTCAATGAAAGTAGT 294
consensus_8520#1      AAACTCCAACTTGAATCCACTTTGATTTGAACCAACTGAATTAATTTCAATGAAAGTAGT 284
consensus_8520#2      ------------------------------------------------------------
                                                                                  

consensus_8520#0      TGTAAAAATTTTCATAGTTTTTTCTCATTTAATTTACTTTTCTTCTTTTCGGTTTTCATA 354
consensus_8520#1      TGTAAAAATTTTCATAGTTTTTTCTCATTTAATTTACTTTTCTTCTTTTCGGTTTTCATA 344
consensus_8520#2      ------------------------------------------------------------
                                                                                  

consensus_8520#0      AACCATCCAGTTACTCTCTACATTACAACCAGCTATATTTTACCAATATATGTCACCACC 414
consensus_8520#1      AACCATCCAGTTACTCTCTACATTACAACCAGCTATATTTTACCAATATATGTCACCACC 404
consensus_8520#2      --------------------------------------TGTCCCCACCAGCACAATCACC 22
                                                            * * ** *        * ****

consensus_8520#0      AGCACCATCACATATCTTGATTGTTTTTGTAAATGATCTCACTGAAATACTCAATGGATC 474
consensus_8520#1      AGCACCATCACATATCTTGATTGTTTTTGTAAATGATCTCACTGAAATACTCAATGGATC 464
consensus_8520#2      TCCACCATCACATATCTTGACTGTTTTTGTAAATGATTTCACTGAAATACTCAATGGATC 82
                        ****************** **************** **********************

consensus_8520#0      ATCTTTTTGTTTCATGCGAATACATCAAAATCGCTTTAATATTACAATAATGCAGTACAT 534
consensus_8520#1      ATCTTTTTGTTTCATGCGAATACATCAAAATCGCTTTAATATTACAATAATGCAGTACAT 524
consensus_8520#2      ATCTTTTTGTTTAATGCGAATACATCAAAATCGCTCTAATATTACAATAATGCACTACAT 142
                      ************ ********************** ****************** *****

consensus_8520#0      ATTGTTATAGCTGGATGTTGTTTGATCCAAACATTTCACACCATTGAACACATTTGAACT 594
consensus_8520#1      ATTGTTATAGCTGGATGTTGTTTGATCCAAACATTTCACACCATTGAACACATTTGAACT 584
consensus_8520#2      ATTGTTATAGCTGGATGTTGTTTGATCCAAACATTTCACACCATTGAACACATTTGAACT 202
                      ************************************************************

consensus_8520#0      AATTGAAGTGAATTGTGAAACATGCATAATATATGTATCATAATGTTAAAATACTTGTAT 654
consensus_8520#1      AATTGAAGTGAATTGTGAAACATGCATAATATATGTATCATATTGTTAAAATACTTGTAT 644
consensus_8520#2      AATTGAAGTGAATTGTGAAACATGCATAATATATGTATCATATTGTTAAAATACTTGTAT 262
                      ****************************************** *****************

consensus_8520#0      ACATAAACAATTCCAATGTTCCTACAAAAATTAGG-AATCGAAATTAGC-------- 702
consensus_8520#1      ACATAAACAATTCCAATGTTCCTACAAAAATTATATAAACGAAATTAG--------- 692
consensus_8520#2      ACATAAACAATTCCAATGTTCCTATAAAGATTATATAANCGGAAAAAAAAAAAAAAA 319
                      ************************ *** ****   ** ** **  *