These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8524#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 538 fasta sequence [TTCAAAACAGAAACCAACATTACAGGATATGTCGGCTGTTGCAGCTCAAAGCGATGGGGTAGCCAAACTGCAACAGGCTCGCACAGCAGCTCTGGCGAAAATAGAGGAAGCTCGCAATC-GGAGGGCAAAACGACTCAAGGAAGCT-AAAGGAGAAGC-AAATTTGGAAGTC-GATGCTTTCAAA-GCACAACAGGAAGCTCATTATAATTCACTTGAGCTTCAAGTTAACTCACAATATGGTCCCTACGAAGAATTGTGTCGTCAAATGACAGACGAACAGCTAAACTCAATGCAACGTTCGTTCCAGTCAAACAAAAATGCAGCTTTGCAGTTATTGTTGTCTAAAGTTTTAGATGTAAAGCCTGTCGTCCACGTCAACTTTGGTTTCAAGAGTCCAGGGTCGTAGTAGGTTTATGTTCTTTCAAAAGCAGAATTAGACCAAACCACTTACAAGCATAATATACCTTCAATTGTGATTAAGAATCTAATTATTTTAACCACTATAATAGACGTTAATTTGCTTAAAAAAAAAAAAAAAAAA] [+] EMBL CD183665 [TTCAAAACAGAAACCAACATTACAGGATATGTCGGCTGTTGCAGCTCAAAGCGATGGGGTAGCCAAACTGCAACAGGCTCGCACAGCAGCTCTGGCGAAAATAGAGGAAGCTCGCAATC GGAGGGCAAAACGACTCAAGGAAGCT AAAGGAGAAGC AAATTTGGAAGTC GATGCTTTCAAA GCACAACAGGAAGCTCATTATAATTCACTTGAGCTTCAAGTTAACTCACAATATGGTCCCTACGAAGAATTGTGTCGTCAAATGACAGACGAACAGCTAAACTCAATGCAACGTTCGTTCCAGTCAAACAAAAATGCAGCTTTGCAGTTATTGTTGTCTAAAGTTTTGGATGTAAAGCCTGTCGTCCACGTCAACTTTGGTTTCAAG ] [+] EMBL CD079940 [ TCAAAACAGAAACCAACATTACAGGATATGTCGGCTGTTGCAGCTCAAAGCGATGGGGTAGCCAAACTGCAACAGGCTCGCACAGCAGCTCTGGCGAAAATAGAGGAAGCTCGCAATC GGAGGGCAAAACGACTCAAGGAAGCT AAAGGAGAAGC AAATTTGGAAGTC GATGCTTTCAAA GCACAACAGGAAGCTCATTATAATTCACTTGAGCTTCAAGTTAACTCACAATATGGTCCCTACGAAGAATTGTGTCGTCAAATGACAGACGAACAGCTAAACTCAATGCAACGTTCGTTCCAGTCAAACAAAAATGCAGCTTTGCAGTTATTGTTGTCTAAAGTTTTAGATGTAAAGCCTGTCGTCCACGTCAACTTTGGTTTCAAGAGTCCAGGGTCGTAGTAGGTTTATGTTCTTTCAAAAGCAGAATTAGACCAAACCACTTACAAGCATAATATACCTTCAATTGTGATTAAGAATCTAATTATTTTAACCACTATAATAGACGT ] [-] EMBL CD074137 [ CAAAACAGAAACCAACATTACAGGATATGTCGGCTGTTGCAGCTCAAAGCGATGGGGTAGCCAAACTGCAACAGGCTCGCACAGCAGCTCTGGCGAAAATAGAGGAAGCTCGCAATC GGAGGGCAAAACGACTCAAGGAAGCT AAAGGAGAAGC AAATTTGGAAGTC GATGCTTTCAAA GCACAACAGGAAGCTCATTATAATTCACTTGAGCTTCAAGTTAACTCACAATATGGTCCCTACGAAGAATTGTGTCGTCAAATGACAGACGAACAGCTAAACTCAATGCAACGTTCGTTCCAGTCAAACAAAAATGCAGCTTTGCAGTTATTGTTGTCTAAAGTTTTAGATGTAAAGCCTGTCGTCCACGTCAACTTTGGTTTCAAGAGTCCAGGGTCGTAGTAGGTTTATGTTCTTTCAAAAGCAGAATTAGACCAAACCACTTACAAGCATAATATACCTTCAATTGTGATTAAGAATCTAATTATTTTAACCACTATAATAGACGTT ] [+] EMBL SMAA69184 [ AGCTCAAAGCGATGGGGTAGCCAAACTGCAACAGGCTCGCACAGCAGCTCTGGCGAAAATAGAGGAAG TCG AATC GGAGGG AAAACGA TCAAGGAAG T AAAGGAGAATG AAA ] [-] EMBL CD141569 [ angAGAGGAAGCTCGC ATCGGGAGGGCAAAACGACTCAAGGAAGCT AAAGGAGAAGC AAATTTGGAAGTC GATGCTTTCAAA GCACAACAGGAAGCTCATTATAATTCACTTGAGCTTCAAGTTAACTCACAATATGGTCCCTACGAAGAATTGTGTCGTCAAATGACAGACGAACAGCTAAACTCAATGCAACGTTCGTTCCAGTCAAACAGAAATGCAGCTTTGCAGTTATTGTTGTCTAAAGTTTTAGATGTAAAGCCTGTCGTCCACGTCAACTTTGGTTTCAAGAGTCCAGGGTCGTAGTAGGTTAATGTTCTTT ] [-] EMBL AI394972 [ GAACCTAAAAGGCTAATCAAAATTTGGACCTCTGATGATTTCAAATTCACTACAGGAATCTCATTATAGCTCACCTGAGGTCCAAGTTAACTGACAATATGATCCATACGAAGAATTATGTCGTCAAATGACAGACGAACAGCTAAACTCAATGCAACGTTCGTTCCAGTCAAACAAAAATGCAGCTTTGCAGTTATTATTGTCTAAAGTTTTAGATGTAAAGCCTGTCGTCCACGTCAACTTTGGTTTCAAGAGTCCAGGGTCGTAGTAGGTTTATGTTCTTTCAAAAGCAGAATTAGACCAAACCACTTACAAGCATAATATACCTTCAATTGTGATTAAGAATCTAATTATTTTAACCACTATAATAGACGTTAATTTGCTTAAAAAAAAAAAAAAAAAA] consensusID : consensus_8524#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 492 fasta sequence [CACGAGGGCCCAAAATTTACCAGGGTTGGACAAGCAGCTTTTGGGGAAAATAGGAGAAGATTCCCATTAGGGAGGGGAAAAACGGTTTCAAGGAAGGTTATAGGGGAAGGCAAATTTGGAAATCGATGTTTTCAAAGCGCAACCGGGAAGTCCTTTTAAATCACCTGAGGCTCAAGGTAACTTACAATATTGTCCCTTCGAAGAATTTTGTTGTCAAATTACCGGCGAACCGGTAAACTCAATGCAACGTTTGTTCCCGTAAAACAAAATGCCGCTNTGCAGTTATTGTTGTCTAAAGTTTTAGATGTAAAGCCTGTCGTCCACGTCAACTTTGGTTTCAAGAGTCCAGGGTCGTAGTAGGTTTATGTTCTTTCAAAAGCAGAATTAGACCAAACCACTTACAAGCATAATATACCTTCAATTGTGATTAAGAATCTAATTATTTTAACCACTATAATAGACGTTAATTTGCTTAAAAAAAAAAAAAAAAAA] [-] EMBL AI395353 [CACGAGGGCCCAAAATTTACCAGGGTTGGACAAGCAGCTTTTGGGGAAAATAGGAGAAGATTCCCATTAGGGAGGGGAAAAACGGTTTCAAGGAAGGTTATAGGGGAAGGCAAATTTGGAAATCGATGTTTTCAAAGCGCAACCGGGAAGTCCTTTTAAATCACCTGAGGCTCAAGGTAACTTACAATATTGTCCCTTCGAAGAATTTTGTTGTCAAATTACCGGCGAACCGGTAAACTCAATGCAACGTTTGTTCCCGTAAAACAAAATGCCGCTNTGCAGTTATTGTTGTCTAAAGTTTTAGATGTAAAGCCTGTCGTCCACGTCAACTTTGGTTTCAAGAGTCCAGGGTCGTAGTAGGTTTATGTTCTTTCAAAAGCAGAATTAGACCAAACCACTTACAAGCATAATATACCTTCAATTGTGATTAAGAATCTAATTATTTTAACCACTATAATAGACGTTAATTTGCTTAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8524#0 TTCAAAACAGAAACCAACATTACAGGATATGTCGGCTGTTGCAGCTCAAAGCGATGGGGT 60 consensus_8524#1 ----------------------------------------------------CACGAGG- 7 * * ** consensus_8524#0 AGCCAAACTGCAACAGGCTCGCACA-GCAGCTCT-GGCGAAAATAGAGGAAGCTCGCAAT 118 consensus_8524#1 GCCCAAAATTTACCAGGGTTGGACAAGCAGCTTTTGGGGAAAATAGGAGAAGATTCCCAT 67 ***** * * **** * * *** ****** * ** ******** **** * * ** consensus_8524#0 CGGAG---GGCAAAACGACT-CAAGGAAG-CTAAAGGAGAAG-CAAATTTGGAAGTCGAT 172 consensus_8524#1 TAGGGAGGGGAAAAACGGTTTCAAGGAAGGTTATAGGGGAAGGCAAATTTGGAAATCGAT 127 * * ** ****** * ******** ** *** **** *********** ***** consensus_8524#0 GCTTTCAAAGCACAACAGGAAGCTCATTATAATTCACTTGAGCTTCAAGTTAACTCACAA 232 consensus_8524#1 GTTTTCAAAGCGCAACCGGGAAGTCCTTTTAAATCACCTGAGGCTCAAGGTAACTTACAA 187 * ********* **** ** * ** ** *** **** **** ***** ***** **** consensus_8524#0 TATGGTCCCTACGAAGAATTGTGTCGTCAAATGACAGACGAACAGCTAAACTCAATGCAA 292 consensus_8524#1 TATTGTCCCTTCGAAGAATTTTGTTGTCAAATTACCGGCGAACCGGTAAACTCAATGCAA 247 *** ****** ********* *** ******* ** * ***** * ************** consensus_8524#0 CGTTCGTTCCAGTCAAACAAAAATGCAGCTTTGCAGTTATTGTTGTCTAAAGTTTTAGAT 352 consensus_8524#1 CGTTTGTTCCCGTAAAACAAAA-TGCCGCTNTGCAGTTATTGTTGTCTAAAGTTTTAGAT 306 **** ***** ** ******** *** *** ***************************** consensus_8524#0 GTAAAGCCTGTCGTCCACGTCAACTTTGGTTTCAAGAGTCCAGGGTCGTAGTAGGTTTAT 412 consensus_8524#1 GTAAAGCCTGTCGTCCACGTCAACTTTGGTTTCAAGAGTCCAGGGTCGTAGTAGGTTTAT 366 ************************************************************ consensus_8524#0 GTTCTTTCAAAAGCAGAATTAGACCAAACCACTTACAAGCATAATATACCTTCAATTGTG 472 consensus_8524#1 GTTCTTTCAAAAGCAGAATTAGACCAAACCACTTACAAGCATAATATACCTTCAATTGTG 426 ************************************************************ consensus_8524#0 ATTAAGAATCTAATTATTTTAACCACTATAATAGACGTTAATTTGCTTAAAAAAAAAAAA 532 consensus_8524#1 ATTAAGAATCTAATTATTTTAACCACTATAATAGACGTTAATTTGCTTAAAAAAAAAAAA 486 ************************************************************ consensus_8524#0 AAAAAA 538 consensus_8524#1 AAAAAA 492 ****** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||