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Schistosoma mansoni
cluster # 8532 cluster # 8532       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8532#0 length = 1393 sequences # 6  
consensus_8532#1 length = 427 sequences # 1  

consensusID : consensus_8532#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1393
fasta sequence
                              [CAACTTTATTATGATATCAGAGGTAGGATCAATTCATACGTATGAGCACAAACCAATAAATTAAATCAAATCAAATATAATGAAGTATGAAAATGATCAACTCTTCTTTGAGCCGAACACATACACACACACACAGTAAAAGAAAACACAACGAAACAGAACAGAAACAAAAATCACTTCAAGTGAATGAAAATAGTTACTAAGAGAAAGAAAAATTGTTATGGGTGATGAAAACAGAAATGAGCAACATAGGTACCTAACTACTATCACATACACTCACACATACATACGTTCAACTAGAACCGCAAGTATCATGTACACTGTGCAGACCAATGTTCATCCTGTTGTGCTAACGAGGTATGGCAACTTGGACCGATGCATAAATGTGCCTGGTTCTACGTTGCAGCTGACTGACATTGTGCAGATCACTTTTTGTCTCATAGCCGAATACAATGTAAGAATAAAGCAAAATCATCCAAATGAATCACACATGAAACGAAGATAATAATGATAATAATAACTGAAACTACTACTGAAATTATTATTGCTTGGGAAGATATAATAACATGAAAGACTAATTTTGCCACAGCTTAAATCCAACCAAAATACAACAAATGAACAAGTTATAAAATTAGGCAAC--AAAAAAGAAAACAATATCCACAAACAATGTAAACAGCATGATATTATGATTGTCATTGTCACAGGGATAGATGGATAGATAGATCAGTAGGTAGGTAGGTGGGTAGGTGGAGTAGATTAGTTTAGTATTATTTACTCAGTGACAAAATGAAATTGACGAAATGAAAGATAATCCTTTAAAATATTTGGTAAGTAAAGTTCTTTAACTGGTGATAATTTAGCAGAGCGTAATAAAGAAAAAATAGCCAATCTTGAAAGGGATTGTAACGATGGAACTTGATTTTGTACAGATTTTAATAACTGGTAAACTGGACTCGTATTTGGCACATAATCAATTGGAATACGGTTCTCTTTATCTACAGAAATCGGAGATGCACCGAATTCTAGCAGTAAATATGTTATGTCAACATCATTTAATTTCGCTGCCATGTGTAAAGGAGTTGTCAATCGTACTCCACAATTCGGGTCTGCACCTTTAGAAAGCAGAAGGTAAACACCAGCATAAAATCTCCTTTGGATAGCTATATGTAGCGGACAAAGA-CCATTGCGTTCAGGAGAATTTAAGCTTGCACCA-GCGTCTATCAAAACCTTCATT-GCATTTATAGATTCATTCTGTGTAGCATAGATTAACGGAGAACCCCAATATGATGGTGGATTAACATCAACCTTACTTCTTAATAAAAGGGAAATTATCTCAGCTGATCCGCTTAGTGCTGCATCGCAAATTGGAGTCTGTCCATCAATATTTGAGGCA]

[+] EMBL CD077128             [CAACTTTATTATGATATCAGAGGTAGGATCAATTCATACGTATGAGCACAAACCAATAAATTAAATCAAATCAAATATAATGAAGTATGAAAATGATCAACTCTTCTTTGAGCCGAACACATACACACACACACAGTAAAAGAAAACACAACGAAACAGAACAGAAACAAAAATCACTTCAAGTGAATGAAAATAGTTACTAAGAGAAAGAAAAATTGTTATGGGTGATGAAAACAGAAATGAGCAACATAGGTACCTAACTACTATCACATACACTCACACATACATACGTTCAACTAGAACCGCAAGTATCATGTACACTGTGCAGACCAATGTTCATCCTGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD078464             [                                                                                                                                                                   GAAACAAAAATCNCTTCAAGTAAATGAAAATAGTTACTAAGAGAAAGAAAAATTGTCATGGGTGATGAAAACAGAAATGAGCAACATAAGTACCTAACTACTATCACATACACACACACATACATACGTACAACTAGAACCGCAAGTATCATATACACTGTGCAGACCAATGTTCATCCTGTTGTGCTAACGAGGTATGGCAACTTGGACCGATGCATAAATGTGCCTGGTTCTACGTTGCAGCTGACTGACATTGTGCAGATCACTTTTTGTCTCATAGCCGAATACAATGTAAGAATAAAGCAAAATCATCCAAATGAATCACACATGAAACGAAGATAATAATGATAATAATAACTGAAACTACTACTGAAATTATTATTGCTTGGGAAGATATAATAACATGAAAGACTAATTTTGCCACAGCTTAAATCCAACCAAAATACAACAAATGAACAAGTTATAAAATTAGGCAACAAAAAAAAGAAAACAATATCCACAAACAATGTAAACAGCATGATATTATGATTGTCATTGTCACAGGGATAGATGGATAGATAGATCAGTAGGTAGGTAGGTGGGTAGGTGGAGTAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD169394             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AATAATGATAATAATAACTGAAACTACTACTGAAATTATTATTGCTTGGGAAGATATAATAACATGAAAGACTAATTTTGCCACAGCTTAAATCCAACCAAAATACAACAAATGAACAAGTTATAAAATTAGGCAAC  AAAAAAGAAAACAATATCCACAAACAATGTAAACAGCATGATATTATGATTGTCATTGTCACAGGGATAGATGGATAGATAGATCAGTAGGTAGGTAGGTGGGTAGGTGGAGTAGATTAGTTTAGTATTATTTACTCAGTGACAAAATGAAATTGACGAAATGAAAGATAATCCTTTAAAATATTTGGTAAGTAAAGTTCTTTAACTGGTGATAATTTAGCAGAGCGTAATAAAGAAAAAATAGCCAATCTTGAAAGGGATTGTAACGATGGAACTTGATTTTGTACAGATTTTAATAACTGGTAAACTGGACTCGTATTTGGCACATAATCAATTGGAATACGGTTCTCTTTATCTACAGAAATCGGAGATGCACCGAATTCTAGCAGTAAATATGTTATGTCAACATCATTT                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD068666             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AGATAGATCAGTAGGTAGGTAGGTGGGTAGGTGGAGTAGATTAGTTTAGTATTATTTACTCAGTGACAAAATGAAATTGACGAAATGAAAGATAATCCTTTAAAATATTTGGTAAGTAAAGTTCTTTAACTGGTGATAATTTAGCAGAGCGTAATAAAGAAAAAATAGCCAATCTTGAAAGGGATTGTAACGATGGAACTTGATTTTGTACAGATTTTAATAACTGGTAAACTGGACTCGTATTTGGCACATAATCAATTGGAATACGGTTCTC TTATCTACAGAAATCGGAGATGC CCG ATTCTAGCAGTAAATATGTTATG C ACATCA TTAAT                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD129272             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TTTAGTATTATTTACTCAGTGACAAAATGAAATTGACGAAATGAAAGATAATCCTTTAAAATATTTGGTAAGTAAAGTTCTTTAACTGGTGATAATTTAGCAGAGCGTAATAAAGAAAAAATAGCCAATCTTGAAAGGGATTGTAACGATGGAACTTGATTTTGTACAGATTTTAATAACTGGTAAACTGGACTCGTATTTGGCACATAATCAATTGGAATACGGTTCTCTTTATCTACAGAAATCGGAGATGCACCGAATTCTAGCAGTAAATATGTTATGTCAACATCATTTAATTTCGCTGCCATGTGTAAAGGAGTTGTCAATCGTACTCCACAATTCGGGTCTGCACCTTTAGAAAGCAGAAGGTAAACACCAGCATAAAATCTCCTTTGGATAGCTATATGTAGCGGACAAAGA CCATTGCGTTCAGGAGAATTTAAGCTTGCACCA GCGTCTATCAAAACCTTCATT GCATTTATAGATTCATTCTGTGTAGCATAGATTAACGGAGAACCCCAATATGATGGTGGATTAACATCAACCTTACTTCTTAATAAAAGGGAAATTATCTCAGCTGATCCGCTTAGTGCTGCATCGCAAATTGGAGTCTGTCCATCAATATTTGAGGCA]
[-] EMBL BF936411             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AAGCAGAAGGTAACCACCAGCATAAAATCTCCTTTGGATAGCTATATGTAGCGGACAAAGACCCATTGCGTTCAGGAGAATTTAAGCTTGCACCAGGCGTCTATCAAAACCTTCATTGGCATTTATAGATTCATTCTGTGTAGCATAGATTAACGGAGAACCCCAA ATGA GGTGGATTAACATCAACCTTACTTCTTAATAAAAGGGAAATTATCTCAGCTGATC                                                  ]


>consensus_8532#0 CAACTTTATTATGATATCAGAGGTAGGATCAATTCATACGTATGAGCACAAACCAATAAA TTAAATCAAATCAAATATAATGAAGTATGAAAATGATCAACTCTTCTTTGAGCCGAACAC ATACACACACACACAGTAAAAGAAAACACAACGAAACAGAACAGAAACAAAAATCACTTC AAGTGAATGAAAATAGTTACTAAGAGAAAGAAAAATTGTTATGGGTGATGAAAACAGAAA TGAGCAACATAGGTACCTAACTACTATCACATACACTCACACATACATACGTTCAACTAG AACCGCAAGTATCATGTACACTGTGCAGACCAATGTTCATCCTGTTGTGCTAACGAGGTA TGGCAACTTGGACCGATGCATAAATGTGCCTGGTTCTACGTTGCAGCTGACTGACATTGT GCAGATCACTTTTTGTCTCATAGCCGAATACAATGTAAGAATAAAGCAAAATCATCCAAA TGAATCACACATGAAACGAAGATAATAATGATAATAATAACTGAAACTACTACTGAAATT ATTATTGCTTGGGAAGATATAATAACATGAAAGACTAATTTTGCCACAGCTTAAATCCAA CCAAAATACAACAAATGAACAAGTTATAAAATTAGGCAACAAAAAAGAAAACAATATCCA CAAACAATGTAAACAGCATGATATTATGATTGTCATTGTCACAGGGATAGATGGATAGAT AGATCAGTAGGTAGGTAGGTGGGTAGGTGGAGTAGATTAGTTTAGTATTATTTACTCAGT GACAAAATGAAATTGACGAAATGAAAGATAATCCTTTAAAATATTTGGTAAGTAAAGTTC TTTAACTGGTGATAATTTAGCAGAGCGTAATAAAGAAAAAATAGCCAATCTTGAAAGGGA TTGTAACGATGGAACTTGATTTTGTACAGATTTTAATAACTGGTAAACTGGACTCGTATT TGGCACATAATCAATTGGAATACGGTTCTCTTTATCTACAGAAATCGGAGATGCACCGAA TTCTAGCAGTAAATATGTTATGTCAACATCATTTAATTTCGCTGCCATGTGTAAAGGAGT TGTCAATCGTACTCCACAATTCGGGTCTGCACCTTTAGAAAGCAGAAGGTAAACACCAGC ATAAAATCTCCTTTGGATAGCTATATGTAGCGGACAAAGACCATTGCGTTCAGGAGAATT TAAGCTTGCACCAGCGTCTATCAAAACCTTCATTGCATTTATAGATTCATTCTGTGTAGC ATAGATTAACGGAGAACCCCAATATGATGGTGGATTAACATCAACCTTACTTCTTAATAA AAGGGAAATTATCTCAGCTGATCCGCTTAGTGCTGCATCGCAAATTGGAGTCTGTCCATC AATATTTGAGGCA



consensusID : consensus_8532#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 427
fasta sequence
                              [AGAAGCTGATCCGCTTAGTGCTGCATCGCAAATTGGAGTCTGTCCATCAATATTTGAGGCATTCGCATGAACACCGCTATCTAATAAAAGACGCACAGCTTTAACATTTCCTAATAAACAGGCATGGTGAAGCAACGTATTGTTGTCTGCATCACGAGAATGTATATTGAATGTTTGCAAAAGGTTTTGGAGGTCATCATTGTCACCTGACTTCAGGATTCTGATTGCATCAATCATTTGCTTAATTTCAATCCTTTTACATCACCGAGACTTAGTAGCAAAAAAATTAAGCTTTCCGGAGAATTTAAGCTTGCACCAGCGTCTATCANAACCTTCATTGCATCTATAGATTCATTCTGTGTAGCATAGATTAACGGAGAACCCCCATATGATGGTGGGATTACATCACCTTTACTTTCTAATAGAA]

[+] EMBL CD181698             [AGAAGCTGATCCGCTTAGTGCTGCATCGCAAATTGGAGTCTGTCCATCAATATTTGAGGCATTCGCATGAACACCGCTATCTAATAAAAGACGCACAGCTTTAACATTTCCTAATAAACAGGCATGGTGAAGCAACGTATTGTTGTCTGCATCACGAGAATGTATATTGAATGTTTGCAAAAGGTTTTGGAGGTCATCATTGTCACCTGACTTCAGGATTCTGATTGCATCAATCATTTGCTTAATTTCAATCCTTTTACATCACCGAGACTTAGTAGCAAAAAAATTAAGCTTTCCGGAGAATTTAAGCTTGCACCAGCGTCTATCANAACCTTCATTGCATCTATAGATTCATTCTGTGTAGCATAGATTAACGGAGAACCCCCATATGATGGTGGGATTACATCACCTTTACTTTCTAATAGAA]


>consensus_8532#1 AGAAGCTGATCCGCTTAGTGCTGCATCGCAAATTGGAGTCTGTCCATCAATATTTGAGGC ATTCGCATGAACACCGCTATCTAATAAAAGACGCACAGCTTTAACATTTCCTAATAAACA GGCATGGTGAAGCAACGTATTGTTGTCTGCATCACGAGAATGTATATTGAATGTTTGCAA AAGGTTTTGGAGGTCATCATTGTCACCTGACTTCAGGATTCTGATTGCATCAATCATTTG CTTAATTTCAATCCTTTTACATCACCGAGACTTAGTAGCAAAAAAATTAAGCTTTCCGGA GAATTTAAGCTTGCACCAGCGTCTATCANAACCTTCATTGCATCTATAGATTCATTCTGT GTAGCATAGATTAACGGAGAACCCCCATATGATGGTGGGATTACATCACCTTTACTTTCT AATAGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8532#0      CAACTTTATTATGATATCAGAGGTAGGATCAATTCATACGTATGAGCACAAACCAATAAA 60
consensus_8532#1      ------------------------------------------------------------
                                                                                  

consensus_8532#0      TTAAATCAAATCAAATATAATGAAGTATGAAAATGATCAACTCTTCTTTGAGCCGAACAC 120
consensus_8532#1      ------------------------------------------------------------
                                                                                  

consensus_8532#0      ATACACACACACACAGTAAAAGAAAACACAACGAAACAGAACAGAAACAAAAATCACTTC 180
consensus_8532#1      ------------------------------------------------------------
                                                                                  

consensus_8532#0      AAGTGAATGAAAATAGTTACTAAGAGAAAGAAAAATTGTTATGGGTGATGAAAACAGAAA 240
consensus_8532#1      ------------------------------------------------------------
                                                                                  

consensus_8532#0      TGAGCAACATAGGTACCTAACTACTATCACATACACTCACACATACATACGTTCAACTAG 300
consensus_8532#1      ------------------------------------------------------------
                                                                                  

consensus_8532#0      AACCGCAAGTATCATGTACACTGTGCAGACCAATGTTCATCCTGTTGTGCTAACGAGGTA 360
consensus_8532#1      ------------------------------------------------------------
                                                                                  

consensus_8532#0      TGGCAACTTGGACCGATGCATAAATGTGCCTGGTTCTACGTTGCAGCTGACTGACATTGT 420
consensus_8532#1      ------------------------------------------------------------
                                                                                  

consensus_8532#0      GCAGATCACTTTTTGTCTCATAGCCGAATACAATGTAAGAATAAAGCAAAATCATCCAAA 480
consensus_8532#1      ------------------------------------------------------------
                                                                                  

consensus_8532#0      TGAATCACACATGAAACGAAGATAATAATGATAATAATAACTGAAACTACTACTGAAATT 540
consensus_8532#1      ------------------------------------------------------------
                                                                                  

consensus_8532#0      ATTATTGCTTGGGAAGATATAATAACATGAAAGACTAATTTTGCCACAGCTTAAATCCAA 600
consensus_8532#1      ------------------------------------------------------------
                                                                                  

consensus_8532#0      CCAAAATACAACAAATGAACAAGTTATAAAATTAGGCAACAAAAAAGAAAACAATATCCA 660
consensus_8532#1      ------------------------------------------------------------
                                                                                  

consensus_8532#0      CAAACAATGTAAACAGCATGATATTATGATTGTCATTGTCACAGGGATAGATGGATAGAT 720
consensus_8532#1      ------------------------------------------------------------
                                                                                  

consensus_8532#0      AGATCAGTAGGTAGGTAGGTGGGTAGGTGGAGTAGATTAGTTTAGTATTATTTACTCAGT 780
consensus_8532#1      ------------------------------------------------------------
                                                                                  

consensus_8532#0      GACAAAATGAAATTGACGAAATGAAAGATAATCCTTTAAAATATTTGGTAAGTAAAGTTC 840
consensus_8532#1      ------------------------------------------------------------
                                                                                  

consensus_8532#0      TTTAACTGGTGATAATTTAGCAGAGCGTAATAAAGAAAAAATAGCCAATCTTGAAAGGGA 900
consensus_8532#1      -----------------------------------AGAAGCTGATCCGCTTAGTGCTGCA 25
                                                         * **  *   *    * *    * *

consensus_8532#0      TTGTAACGATGGAACTTGATTTTGTACAGATTTTAATAACTGGTAAACTGGACTCGTATT 960
consensus_8532#1      TCGCAA-ATTGGAGTCTG--TCCATCAATATTTGAGGCATTCGCATGA-ACACCGCTATC 81
                      * * **   ****   **  *   *  * **** *   * * * *      **   *** 

consensus_8532#0      TGGCACATAATCAATTGGAATACGGTTCTCTTTATCTACAGAAATCGGAGATGCACCGAA 1020
consensus_8532#1      TAATAAAAGACGCACAGCTTTAACATT-TCCTAATAAACAGGCAT-GGTGAAGCAACGTA 139
                      *   * *  *   *  *   **   ** ** * **  ****  ** ** ** *** ** *

consensus_8532#0      TTCTAGCAGTAAATATGTTATGTCAACAT-CATTTAATTTCGCTGCCATGTGTAAAGGAG 1079
consensus_8532#1      TTGTTGTC-----TGCATCACGAGAATGTATATTGAATGTT--TGCAAAAGGTTTTGGAG 192
                      ** * *       *   * * *  **  *  *** *** *   *** *   **   ****

consensus_8532#0      TTGTCAATCGTACTCCACAATTCGGGTCTGCACCTTTAGAAAGCAGAAGGTAAACACCAG 1139
consensus_8532#1      GTCATCATTGT-CACCTGACTTCAGGATTCTGATTGCATCAATCATTTGCTTAATTTCA- 250
                       *    ** ** * **  * *** **  *     *  *  ** **   * * **   ** 

consensus_8532#0      CATAAAATCTCCTTTGGATAGCTATATGTAGCGGACAAAGACCATTGCGTTCAGGAGAAT 1199
consensus_8532#1      ------ATCCTTTTACATCACCGAGACTTAGTAGCAAAAAAATTAAGCTTTCCGGAGAAT 304
                            ***   **     * * * *  ***  *  *** *     ** *** *******

consensus_8532#0      TTAAGCTTGCACCAGCGTCTATCAAAACCTTCATTGCATTTATAGATTCATTCTGTGTAG 1259
consensus_8532#1      TTAAGCTTGCACCAGCGTCTATCANAACCTTCATTGCATCTATAGATTCATTCTGTGTAG 364
                      ************************ ************** ********************

consensus_8532#0      CATAGATTAACGGAGAACCCCAATATGATGGTGGATTAACATCAACCTTACTTCTTAATA 1319
consensus_8532#1      CATAGATTAACGGAGAACCCCCATATGATGGTGGGATTACATCACCTTTACTTTCTAATA 424
                      ********************* ************  * ****** * ******  *****

consensus_8532#0      AAAGGGAAATTATCTCAGCTGATCCGCTTAGTGCTGCATCGCAAATTGGAGTCTGTCCAT 1379
consensus_8532#1      GAA--------------------------------------------------------- 427
                       **                                                         

consensus_8532#0      CAATATTTGAGGCA 1393
consensus_8532#1      --------------
                                    




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)