These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8532#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1393 fasta sequence [CAACTTTATTATGATATCAGAGGTAGGATCAATTCATACGTATGAGCACAAACCAATAAATTAAATCAAATCAAATATAATGAAGTATGAAAATGATCAACTCTTCTTTGAGCCGAACACATACACACACACACAGTAAAAGAAAACACAACGAAACAGAACAGAAACAAAAATCACTTCAAGTGAATGAAAATAGTTACTAAGAGAAAGAAAAATTGTTATGGGTGATGAAAACAGAAATGAGCAACATAGGTACCTAACTACTATCACATACACTCACACATACATACGTTCAACTAGAACCGCAAGTATCATGTACACTGTGCAGACCAATGTTCATCCTGTTGTGCTAACGAGGTATGGCAACTTGGACCGATGCATAAATGTGCCTGGTTCTACGTTGCAGCTGACTGACATTGTGCAGATCACTTTTTGTCTCATAGCCGAATACAATGTAAGAATAAAGCAAAATCATCCAAATGAATCACACATGAAACGAAGATAATAATGATAATAATAACTGAAACTACTACTGAAATTATTATTGCTTGGGAAGATATAATAACATGAAAGACTAATTTTGCCACAGCTTAAATCCAACCAAAATACAACAAATGAACAAGTTATAAAATTAGGCAAC--AAAAAAGAAAACAATATCCACAAACAATGTAAACAGCATGATATTATGATTGTCATTGTCACAGGGATAGATGGATAGATAGATCAGTAGGTAGGTAGGTGGGTAGGTGGAGTAGATTAGTTTAGTATTATTTACTCAGTGACAAAATGAAATTGACGAAATGAAAGATAATCCTTTAAAATATTTGGTAAGTAAAGTTCTTTAACTGGTGATAATTTAGCAGAGCGTAATAAAGAAAAAATAGCCAATCTTGAAAGGGATTGTAACGATGGAACTTGATTTTGTACAGATTTTAATAACTGGTAAACTGGACTCGTATTTGGCACATAATCAATTGGAATACGGTTCTCTTTATCTACAGAAATCGGAGATGCACCGAATTCTAGCAGTAAATATGTTATGTCAACATCATTTAATTTCGCTGCCATGTGTAAAGGAGTTGTCAATCGTACTCCACAATTCGGGTCTGCACCTTTAGAAAGCAGAAGGTAAACACCAGCATAAAATCTCCTTTGGATAGCTATATGTAGCGGACAAAGA-CCATTGCGTTCAGGAGAATTTAAGCTTGCACCA-GCGTCTATCAAAACCTTCATT-GCATTTATAGATTCATTCTGTGTAGCATAGATTAACGGAGAACCCCAATATGATGGTGGATTAACATCAACCTTACTTCTTAATAAAAGGGAAATTATCTCAGCTGATCCGCTTAGTGCTGCATCGCAAATTGGAGTCTGTCCATCAATATTTGAGGCA] [+] EMBL CD077128 [CAACTTTATTATGATATCAGAGGTAGGATCAATTCATACGTATGAGCACAAACCAATAAATTAAATCAAATCAAATATAATGAAGTATGAAAATGATCAACTCTTCTTTGAGCCGAACACATACACACACACACAGTAAAAGAAAACACAACGAAACAGAACAGAAACAAAAATCACTTCAAGTGAATGAAAATAGTTACTAAGAGAAAGAAAAATTGTTATGGGTGATGAAAACAGAAATGAGCAACATAGGTACCTAACTACTATCACATACACTCACACATACATACGTTCAACTAGAACCGCAAGTATCATGTACACTGTGCAGACCAATGTTCATCCTGTT ] [-] EMBL CD078464 [ GAAACAAAAATCNCTTCAAGTAAATGAAAATAGTTACTAAGAGAAAGAAAAATTGTCATGGGTGATGAAAACAGAAATGAGCAACATAAGTACCTAACTACTATCACATACACACACACATACATACGTACAACTAGAACCGCAAGTATCATATACACTGTGCAGACCAATGTTCATCCTGTTGTGCTAACGAGGTATGGCAACTTGGACCGATGCATAAATGTGCCTGGTTCTACGTTGCAGCTGACTGACATTGTGCAGATCACTTTTTGTCTCATAGCCGAATACAATGTAAGAATAAAGCAAAATCATCCAAATGAATCACACATGAAACGAAGATAATAATGATAATAATAACTGAAACTACTACTGAAATTATTATTGCTTGGGAAGATATAATAACATGAAAGACTAATTTTGCCACAGCTTAAATCCAACCAAAATACAACAAATGAACAAGTTATAAAATTAGGCAACAAAAAAAAGAAAACAATATCCACAAACAATGTAAACAGCATGATATTATGATTGTCATTGTCACAGGGATAGATGGATAGATAGATCAGTAGGTAGGTAGGTGGGTAGGTGGAGTAGA ] [+] EMBL CD169394 [ AATAATGATAATAATAACTGAAACTACTACTGAAATTATTATTGCTTGGGAAGATATAATAACATGAAAGACTAATTTTGCCACAGCTTAAATCCAACCAAAATACAACAAATGAACAAGTTATAAAATTAGGCAAC AAAAAAGAAAACAATATCCACAAACAATGTAAACAGCATGATATTATGATTGTCATTGTCACAGGGATAGATGGATAGATAGATCAGTAGGTAGGTAGGTGGGTAGGTGGAGTAGATTAGTTTAGTATTATTTACTCAGTGACAAAATGAAATTGACGAAATGAAAGATAATCCTTTAAAATATTTGGTAAGTAAAGTTCTTTAACTGGTGATAATTTAGCAGAGCGTAATAAAGAAAAAATAGCCAATCTTGAAAGGGATTGTAACGATGGAACTTGATTTTGTACAGATTTTAATAACTGGTAAACTGGACTCGTATTTGGCACATAATCAATTGGAATACGGTTCTCTTTATCTACAGAAATCGGAGATGCACCGAATTCTAGCAGTAAATATGTTATGTCAACATCATTT ] [-] EMBL CD068666 [ AGATAGATCAGTAGGTAGGTAGGTGGGTAGGTGGAGTAGATTAGTTTAGTATTATTTACTCAGTGACAAAATGAAATTGACGAAATGAAAGATAATCCTTTAAAATATTTGGTAAGTAAAGTTCTTTAACTGGTGATAATTTAGCAGAGCGTAATAAAGAAAAAATAGCCAATCTTGAAAGGGATTGTAACGATGGAACTTGATTTTGTACAGATTTTAATAACTGGTAAACTGGACTCGTATTTGGCACATAATCAATTGGAATACGGTTCTC TTATCTACAGAAATCGGAGATGC CCG ATTCTAGCAGTAAATATGTTATG C ACATCA TTAAT ] [+] EMBL CD129272 [ TTTAGTATTATTTACTCAGTGACAAAATGAAATTGACGAAATGAAAGATAATCCTTTAAAATATTTGGTAAGTAAAGTTCTTTAACTGGTGATAATTTAGCAGAGCGTAATAAAGAAAAAATAGCCAATCTTGAAAGGGATTGTAACGATGGAACTTGATTTTGTACAGATTTTAATAACTGGTAAACTGGACTCGTATTTGGCACATAATCAATTGGAATACGGTTCTCTTTATCTACAGAAATCGGAGATGCACCGAATTCTAGCAGTAAATATGTTATGTCAACATCATTTAATTTCGCTGCCATGTGTAAAGGAGTTGTCAATCGTACTCCACAATTCGGGTCTGCACCTTTAGAAAGCAGAAGGTAAACACCAGCATAAAATCTCCTTTGGATAGCTATATGTAGCGGACAAAGA CCATTGCGTTCAGGAGAATTTAAGCTTGCACCA GCGTCTATCAAAACCTTCATT GCATTTATAGATTCATTCTGTGTAGCATAGATTAACGGAGAACCCCAATATGATGGTGGATTAACATCAACCTTACTTCTTAATAAAAGGGAAATTATCTCAGCTGATCCGCTTAGTGCTGCATCGCAAATTGGAGTCTGTCCATCAATATTTGAGGCA] [-] EMBL BF936411 [ AAGCAGAAGGTAACCACCAGCATAAAATCTCCTTTGGATAGCTATATGTAGCGGACAAAGACCCATTGCGTTCAGGAGAATTTAAGCTTGCACCAGGCGTCTATCAAAACCTTCATTGGCATTTATAGATTCATTCTGTGTAGCATAGATTAACGGAGAACCCCAA ATGA GGTGGATTAACATCAACCTTACTTCTTAATAAAAGGGAAATTATCTCAGCTGATC ] consensusID : consensus_8532#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence [AGAAGCTGATCCGCTTAGTGCTGCATCGCAAATTGGAGTCTGTCCATCAATATTTGAGGCATTCGCATGAACACCGCTATCTAATAAAAGACGCACAGCTTTAACATTTCCTAATAAACAGGCATGGTGAAGCAACGTATTGTTGTCTGCATCACGAGAATGTATATTGAATGTTTGCAAAAGGTTTTGGAGGTCATCATTGTCACCTGACTTCAGGATTCTGATTGCATCAATCATTTGCTTAATTTCAATCCTTTTACATCACCGAGACTTAGTAGCAAAAAAATTAAGCTTTCCGGAGAATTTAAGCTTGCACCAGCGTCTATCANAACCTTCATTGCATCTATAGATTCATTCTGTGTAGCATAGATTAACGGAGAACCCCCATATGATGGTGGGATTACATCACCTTTACTTTCTAATAGAA] [+] EMBL CD181698 [AGAAGCTGATCCGCTTAGTGCTGCATCGCAAATTGGAGTCTGTCCATCAATATTTGAGGCATTCGCATGAACACCGCTATCTAATAAAAGACGCACAGCTTTAACATTTCCTAATAAACAGGCATGGTGAAGCAACGTATTGTTGTCTGCATCACGAGAATGTATATTGAATGTTTGCAAAAGGTTTTGGAGGTCATCATTGTCACCTGACTTCAGGATTCTGATTGCATCAATCATTTGCTTAATTTCAATCCTTTTACATCACCGAGACTTAGTAGCAAAAAAATTAAGCTTTCCGGAGAATTTAAGCTTGCACCAGCGTCTATCANAACCTTCATTGCATCTATAGATTCATTCTGTGTAGCATAGATTAACGGAGAACCCCCATATGATGGTGGGATTACATCACCTTTACTTTCTAATAGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8532#0 CAACTTTATTATGATATCAGAGGTAGGATCAATTCATACGTATGAGCACAAACCAATAAA 60 consensus_8532#1 ------------------------------------------------------------ consensus_8532#0 TTAAATCAAATCAAATATAATGAAGTATGAAAATGATCAACTCTTCTTTGAGCCGAACAC 120 consensus_8532#1 ------------------------------------------------------------ consensus_8532#0 ATACACACACACACAGTAAAAGAAAACACAACGAAACAGAACAGAAACAAAAATCACTTC 180 consensus_8532#1 ------------------------------------------------------------ consensus_8532#0 AAGTGAATGAAAATAGTTACTAAGAGAAAGAAAAATTGTTATGGGTGATGAAAACAGAAA 240 consensus_8532#1 ------------------------------------------------------------ consensus_8532#0 TGAGCAACATAGGTACCTAACTACTATCACATACACTCACACATACATACGTTCAACTAG 300 consensus_8532#1 ------------------------------------------------------------ consensus_8532#0 AACCGCAAGTATCATGTACACTGTGCAGACCAATGTTCATCCTGTTGTGCTAACGAGGTA 360 consensus_8532#1 ------------------------------------------------------------ consensus_8532#0 TGGCAACTTGGACCGATGCATAAATGTGCCTGGTTCTACGTTGCAGCTGACTGACATTGT 420 consensus_8532#1 ------------------------------------------------------------ consensus_8532#0 GCAGATCACTTTTTGTCTCATAGCCGAATACAATGTAAGAATAAAGCAAAATCATCCAAA 480 consensus_8532#1 ------------------------------------------------------------ consensus_8532#0 TGAATCACACATGAAACGAAGATAATAATGATAATAATAACTGAAACTACTACTGAAATT 540 consensus_8532#1 ------------------------------------------------------------ consensus_8532#0 ATTATTGCTTGGGAAGATATAATAACATGAAAGACTAATTTTGCCACAGCTTAAATCCAA 600 consensus_8532#1 ------------------------------------------------------------ consensus_8532#0 CCAAAATACAACAAATGAACAAGTTATAAAATTAGGCAACAAAAAAGAAAACAATATCCA 660 consensus_8532#1 ------------------------------------------------------------ consensus_8532#0 CAAACAATGTAAACAGCATGATATTATGATTGTCATTGTCACAGGGATAGATGGATAGAT 720 consensus_8532#1 ------------------------------------------------------------ consensus_8532#0 AGATCAGTAGGTAGGTAGGTGGGTAGGTGGAGTAGATTAGTTTAGTATTATTTACTCAGT 780 consensus_8532#1 ------------------------------------------------------------ consensus_8532#0 GACAAAATGAAATTGACGAAATGAAAGATAATCCTTTAAAATATTTGGTAAGTAAAGTTC 840 consensus_8532#1 ------------------------------------------------------------ consensus_8532#0 TTTAACTGGTGATAATTTAGCAGAGCGTAATAAAGAAAAAATAGCCAATCTTGAAAGGGA 900 consensus_8532#1 -----------------------------------AGAAGCTGATCCGCTTAGTGCTGCA 25 * ** * * * * * * consensus_8532#0 TTGTAACGATGGAACTTGATTTTGTACAGATTTTAATAACTGGTAAACTGGACTCGTATT 960 consensus_8532#1 TCGCAA-ATTGGAGTCTG--TCCATCAATATTTGAGGCATTCGCATGA-ACACCGCTATC 81 * * ** **** ** * * * **** * * * * * ** *** consensus_8532#0 TGGCACATAATCAATTGGAATACGGTTCTCTTTATCTACAGAAATCGGAGATGCACCGAA 1020 consensus_8532#1 TAATAAAAGACGCACAGCTTTAACATT-TCCTAATAAACAGGCAT-GGTGAAGCAACGTA 139 * * * * * * ** ** ** * ** **** ** ** ** *** ** * consensus_8532#0 TTCTAGCAGTAAATATGTTATGTCAACAT-CATTTAATTTCGCTGCCATGTGTAAAGGAG 1079 consensus_8532#1 TTGTTGTC-----TGCATCACGAGAATGTATATTGAATGTT--TGCAAAAGGTTTTGGAG 192 ** * * * * * * ** * *** *** * *** * ** **** consensus_8532#0 TTGTCAATCGTACTCCACAATTCGGGTCTGCACCTTTAGAAAGCAGAAGGTAAACACCAG 1139 consensus_8532#1 GTCATCATTGT-CACCTGACTTCAGGATTCTGATTGCATCAATCATTTGCTTAATTTCA- 250 * ** ** * ** * *** ** * * * ** ** * * ** ** consensus_8532#0 CATAAAATCTCCTTTGGATAGCTATATGTAGCGGACAAAGACCATTGCGTTCAGGAGAAT 1199 consensus_8532#1 ------ATCCTTTTACATCACCGAGACTTAGTAGCAAAAAAATTAAGCTTTCCGGAGAAT 304 *** ** * * * * *** * *** * ** *** ******* consensus_8532#0 TTAAGCTTGCACCAGCGTCTATCAAAACCTTCATTGCATTTATAGATTCATTCTGTGTAG 1259 consensus_8532#1 TTAAGCTTGCACCAGCGTCTATCANAACCTTCATTGCATCTATAGATTCATTCTGTGTAG 364 ************************ ************** ******************** consensus_8532#0 CATAGATTAACGGAGAACCCCAATATGATGGTGGATTAACATCAACCTTACTTCTTAATA 1319 consensus_8532#1 CATAGATTAACGGAGAACCCCCATATGATGGTGGGATTACATCACCTTTACTTTCTAATA 424 ********************* ************ * ****** * ****** ***** consensus_8532#0 AAAGGGAAATTATCTCAGCTGATCCGCTTAGTGCTGCATCGCAAATTGGAGTCTGTCCAT 1379 consensus_8532#1 GAA--------------------------------------------------------- 427 ** consensus_8532#0 CAATATTTGAGGCA 1393 consensus_8532#1 -------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||