These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8538#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 555 fasta sequence [NTTTTTTTTTTTTTTTTTTTTTATGATTTAAGAAAATATTAGATATTGTATAACAGATCTGAATTTGTTTATGAAAATTGTCTCAATAATGAGATATTTAGGCATCGGTTTTTATCGAACTGCAATAAACAGGTGAGTTGGTATCCGGTGTGGTAATATTCAAACATTCCTTGACAGAATTCGAGAGCGTGCCAATATCATCAGTTTTATCCTCTTTATCAGAATAAGTACTTTCAATGCTGGGTCTATTGTCACTCAACTTTTCGTCAGTTGCTTGACAACCTTCCTCGAAAACCTTTCGAAATTCTTCCGCATACGTAGAGTTAGCATATCTAACACCTAATAATTCTGGTTTTACCACTTCGTCTGCGAAATCAGCTGTCGTACTCCA-AACAAAAGCTCTACTGCTGCTGCAGTTTGGACGTAAGTACATATTTTTAAGGAGATAATGGTTGGCGCAGACCTTGTACGTGCGATCCCGACGCATCAATAAGCGATAGCATCCACTGGTCCTGTTACGTAGAATTTTCAGAACTCCAACCCCACGCTCCTTCC] [+] EMBL AI395132 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGAAAATATTAGATATTGTATAACAGATCTGAATTTGTTTATGAAAATTGTCTCAATAATGAGATATTTAGGCATCGGTTTTTATCGAACTGCAATAAACAGGTGAGTTGGTATCCGGTGTGGTAATATTCAAACATTCCTTGACAGAATTCGAGAGCGTGCCAATATCATCAGTTTTATCCTCTTTATCAGAATAAGTACTTTCAATGCTGGGTCTATTGTCACTCAACTTTTCGTCAGTTGCTTGACAACCTTCCTCGAAAACCTTTCGAAATTCTTCCGCATACGTAGAGTTAGCATATCTAACACCTAATAATTCTGGATTTACCACGTCGTCAGCGAGATCAGCTGTCGTACTCCATGAC AAAGCTCTACTGCTGCTGCAATTTGGGCGTAAGTACA ] [+] EMBL AI394897 [ TTTTTTTTTTTTTTTTTTTATGATTTAAGAAAATATTAGATATTGTATAACAGATCTGAATTTGTTTATGAAAATTGTCTCAATAATGAGATATTTAGGCATCGGTTTTTATCGAACTGCAATAAACAGGTGAGTTGGTATCCGGTGTGGTAATATTCAAACATTCCTTGACAGAATTCGAGAGCGTGCCAATATCATCAGTTTTATCCTCTTTATCAGAATAAGTACTTTCAATGCTGGGTCTATTGTCACTCAACTTTTCGTCAGTTGCTTGACAACCTTCCTCGAAAACCTTTCGAAA TCTTCCGCATACGTAGAGTTAGCATATCTAACACCTAATAATTCTGGTTTTAACACTTCGTCTGCGAAATCAGCTGTCGTACTCCA AAC AAAGCTCTACTGCTGCTGCAGTTTGGACGTACGTACATATTTTTAAGGAGATAATGGTTGGCGCATACTTT ] [+] EMBL AI394766 [ntnntnTTTTTTTTTTTTTTTTATGATTTAAGAAAATATTAAATATTGTATAACAGATCTGAATTTGTTTATGAAAATTGTCTCAATAATGAGATATTTAGGCATCGGTTTTTATCGAACTGCAATAAACAGGTGAGTTGGTATCCGGTGTGGTAATATTCAAACATTCCTTGACAGAATTCGAGAGCGTGCCAATATCATCAGTTTTATCCTCTTTATCAGAATAAGTACTTTCAATGCTGGGTCTATTGTCACTCAACTTTTCGTCAGTTGCTTGACAACCTTCCTCGAAAACCTTTCGAAATTCTTCCGCATACGTAGAGTTAGCATATCTAACACCTAATAATTCTGGTTTTACCACTTCGTCTGCGAAATCAGCTGTCGTACTCCA AACAAAAGCTCTACTGCTGCTGCAGTTTGGACGTAAGTACATATTTTTAAGGAGATAATGGTTGG ] [-] EMBL AW466249 [ TGTATAACAGATCTGAATTTGTTTATGAAAATTGTCTCAATAATGAGATATTTAGGCATCGGTTTTTATCGAACTGCAATAAACAGGTGAGTTGGTATCCGGTGTGGTAATATTCAAACATTCCTTGACAGAATTCGAGAGCGTGCCAATATCATCAGTTTTATCCTCTTTATCAGAATAAGTACTTTCAATGCTGGGTCTATTGTCACTCAACTTTTCGTCAGTTGCTTGACAACCTTCCTCGAAAACCTTTCGAAATTCTTCCGCATACGTAGAGTTAGC ] [-] EMBL CD140968 [ AGATAGCATATCTAACACCTAATAATTCTGGTTTTACCACTTCGTCTGCGAAATCAGCTGTCGTACTCCA AACAAAAGCTCTACTGCTGCTGCAGTTTGGACGTAAGTACATATTTTTAAGGAGATAATGGTTGGCGCAGACCTTGTACGTGCGATCCCGACGCATCAATAAGCGATAGCATCCACTGGTCCTGTTACGTAGAATTTTCAGAACTCCAACCCCACGCTCCTTCC] [+] EMBL CD136471 [ CATATCTAACACCTAATAATTCTGGTTTTACCACTTCGTCTGCGAAATCAGCTGTCGTACTCCA AACAAAAGCTCTACTGCTGCTGCAGTTTGGACGTAAGTACATATTTTTAAGGAGATAATGGTTGGCGCAGACCTTGTACGTGCGATCCCGACGCATCAATAAGCG ] consensusID : consensus_8538#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence [GANATTGAANACAGATNTGATTTGTTATGAAATTGTCNCATATGAGATATTTAGCCTCGGTTTTTANCGACCTCCATAAACAGGTGAGTTGTATCCGTTGTGNTAATATCCAACATTCCTTGACAGATTCGAGAGCGTGCCAATATCATCAGTTTTATCCTCTTTATCAGAATAAGTACTTTCAATGCTGGTTCCTGAAAATAAGGAATGATGGAATATTTTAGGAGGATCAGGATCCAAAAAAATTTAAAAAGTATGGTTCCTTATTCTTTGCTTAATAAAAACTAAATATAACAGTAATTTTCACCTACATTGAATAGAAAGACTCCTAATTATACGAGAGCGTAATCAATTNAGAACACNAGATGAGAATTTATAACACAATTTACATCTGATATATAGCATATAGAAGATAGTACAAATTACNC] [-] EMBL SM9461 [GANATTGAANACAGATNTGATTTGTTATGAAATTGTCNCATATGAGATATTTAGCCTCGGTTTTTANCGACCTCCATAAACAGGTGAGTTGTATCCGTTGTGNTAATATCCAACATTCCTTGACAGATTCGAGAGCGTGCCAATATCATCAGTTTTATCCTCTTTATCAGAATAAGTACTTTCAATGCTGGTTCCTGAAAATAAGGAATGATGGAATATTTTAGGAGGATCAGGATCCAAAAAAATTTAAAAAGTATGGTTCCTTATTCTTTGCTTAATAAAAACTAAATATAACAGTAATTTTCACCTACATTGAATAGAAAGACTCCTAATTATACGAGAGCGTAATCAATTNAGAACACNAGATGAGAATTTATAACACAATTTACATCTGATATATAGCATATAGAAGATAGTACAAATTACNC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8538#0 NTTTTTTTTTTTTTTTTTTTTTATGATTTAAGAAAATATTAGATATTGTATAACAGATCT 60 consensus_8538#1 -----------------------------------------GANATTGAANA-CAGATNT 18 ** **** * * ***** * consensus_8538#0 GAATTTGTTTATGAAAATTGTCTCAATAATGAGATATTTAGGCATCGGTTTTTATCGAAC 120 consensus_8538#1 GA-TTTGTT-ATGAAA-TTGTCNCAT--ATGAGATATTTAGCC-TCGGTTTTTANCGACC 72 ** ****** ****** ***** ** ************* * ********** *** * consensus_8538#0 TGCAATAAACAGGTGAGTTGGTATCCGGTGTGGTAATATTCAAACATTCCTTGACAGAAT 180 consensus_8538#1 TCCA-TAAACAGGTGAGTTG-TATCCGTTGTGNTAATATCCAA-CATTCCTTGACAGA-T 128 * ** *************** ****** **** ****** *** ************** * consensus_8538#0 TCGAGAGCGTGCCAATATCATCAGTTTTATCCTCTTTATCAGAATAAGTACTTTCAATGC 240 consensus_8538#1 TCGAGAGCGTGCCAATATCATCAGTTTTATCCTCTTTATCAGAATAAGTACTTTCAATGC 188 ************************************************************ consensus_8538#0 TGGGTCTATTGTCACTCAACTTTTCGTCAGTTGCTTGACAACCTTCCTCGAAAACCTTTC 300 consensus_8538#1 TGGTTCCTGAAAATAAGGAATGATGGAATATTTTAGGAGGATCAGGATCCAAAAAAATTT 248 *** ** * * * * ** ** * * ** **** ** consensus_8538#0 GAAATTCTTCCGCATACGTAGAGTTAGCATATCTAACACCTAATAATTCTGGTTTTACCA 360 consensus_8538#1 AAAAAG--TATGGTTCCTTATTCTTTGCTTAATAAAAACTAAATATAACAGTAATTTTCA 306 *** * * * * ** ** ** ** ** ** **** * * ** ** consensus_8538#0 CTTCGTCTGCGAAATCAGCTGTCGTACTCCAAACAAAAGCTCTACTGCTGCTGCAGTTTG 420 consensus_8538#1 CCTACATTGAATAGAAAGACTCCTAATT--ATACGAGAGCGTAATCAATTNAGAACACNA 364 * * ** * ** * * * * ** * *** * * * * consensus_8538#0 GACGTAAGTACATATTTTTAAGGAGATAATGGTTGGCGCAGACCTTGTACGTGCGATCCC 480 consensus_8538#1 GATGAGAATTTATA-----ACACAATTTACATCTGATATATAGCATATAGAAGATAGTAC 419 ** * * * *** * * * * ** * * * * ** * * * consensus_8538#0 GACGCATCAATAAGCGATAGCATCCACTGGTCCTGTTACGTAGAATTTTCAGAACTCCAA 540 consensus_8538#1 AAATTACNC--------------------------------------------------- 428 * * consensus_8538#0 CCCCACGCTCCTTCC 555 consensus_8538#1 --------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||