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Schistosoma mansoni
cluster # 8540 cluster # 8540       Sequences # 7       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8540#0 length = 750 sequences # 4  
consensus_8540#1 length = 716 sequences # 2  
consensus_8540#2 length = 324 sequences # 1  

consensusID : consensus_8540#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 750
fasta sequence
                              [CAGTTCCAAATTTGGGAGAATGTATCGTTGGACAGTTCTTTTCCTGCTGTTAAGTCCGGCACTTTGTCTCTTCAATACCAATGATGATGTTATCAAACTCACAGACCAAAACTTTGACAAAGTAATATCAAGCACGGAACTATGGTTTATTATGTTCTATGCATCTTGGTGTGGACACAGTAAAAATGCTGCTCCGGATTGGAAACTATTCGCCACTAATTTTAAGGGTATTATAAAAGTTGCTGCGGTTGATTCAGAAAACAACCCTACAGTAACTCAACGGTTCTCTGTTAAGGGCTTTCCAACAATTTTGATATTTGGAGATAATAAAAACAGTCCTAAACCATATACAGGTGGTAGAGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAGAACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAGCAATTTCGATGAGAAGGTTCTCAACAGTCAAGAGCCGTGGTTGGTAGAATTTTTCGCCCCTTGGTGTGGTCATTGTAAAAATTTAAAACCTCATTGGGACAAAGCAGCTCGTGAGTTGAAAGGAACTGTTAAAGTAGCCGCTTTGGATGCTACGGTTCATAGTCGAATGGCTCAGAAATATGGGATTCGAGGTTATCCTACCATCAAATNNTTCCCTGCTGGACCGAAAACAGATGACCCTATTGATTACGATGGTGCTCGAAAGTCAGA]

[+] EMBL AI976249             [CAGTTCCAAATTTGGGAGAATGTATCGTTGGACAGTTCTTTTCCTGCTGTTAAGTCCGGCACTTTGTCTCTTCAATACCAATGATGATGTTATCAAACTCACAGACCAAAACTTTGACAAAGTAATATCAAGCACGGAACTATGGTTTATTATGTTCTATGCATCTTGGTGTGGACACAGTAAAAATGCTGCTCCGGATTGGAAACTATTCGCCACTAATTTTAAGGGTATTATAAAAGTTGCTGCGGTTGATTCAGAAAACAACCCTACAGTAACTCAACGGTTCTCTGTTAAGGGCTTTCCAACAATTTTGATATTTGGAGATAATAAAAACAGTCCTAAACCATATACAGGTGGTAGAGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAGAACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAGCAATTTCGATGAGAAGGTTCTCAACAGTCAAGAGCCGTGGCTGGTAGAATTTTTCGCCCCTTGGTGTGGTCATTGTAAAAATTTACAACCTCATTGGGACAAAGCAGCTCGTGAGTTGAAAGGAACTGTTAAAGTAGCCGCTTTGGATGCTACGGTTCATAGT                                                                                                           ]
[+] EMBL CD112670             [                                                                                 TGATGATGTTATCAAACTCACAGACCAAAACTTTGACAAAGTAATATCGAGCAAGGAACTATGGTTTATTATGTTCTATGCATCTTGGTGTGGACACAGTAAAAATGCTGCTCCGGATTGGAAACTATTCGCCACTAATTTTAAGGGTATTATAAAAGTTGCTGCGGTTGATTCAGAAAACAACCCTACAGTAACTCAACGGTTCTCTGTTAAGGGCTTTCCAACAATTTTGATATTTGGAGATAATAAAAACAGTCCTAAACCATATACAGGTGGTAGAGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAGAACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAGCAATTTCGATGAGAAGGTTCTCA                                                                                                                                                                                                                                                       ]
[+] EMBL CD162571             [                                                                                                                                             ATGGTTTATTATGTTCTATGCATCTTGGTGTGGACACAGTAAAAATGCTGCTCCGGATTGGAAACTATTCGCCACTAATTTTAAGGGTATTATAAAAGTTGCTGCGGTTGATTCAGAAAACAACCCTACAGTAACTCAACGGTTCTCTGTTAAGGGCTTTCCAACAATTTTGATATTTGGAGATAATAAAAACAGTCCTAAACCATATACAGGTGGTAGAGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAGAACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAGCAATTTCGATGAGAAGGTTCTCAACAGTCAAGAGCCGTGGTTGGTAGAATTTTTCGCCCCTTGGTGTGGTCATTGTAAAAATTTAAAACCTCATTGNGACAAAGCAGCTCGTGAGTTGAAAGGAACTGTTAAAGTAGCCGCTTTGGATGCTACGGTTCATAGTCGAATGGCTCAGAAATATGGGATTCGAGGTTATCCTACCATCAAATNNTTCCCTGCTGGACCGAAAACAGATGACCCTATTGATTACGATGGTGCTCGAAAGTCAGA]
[-] EMBL CD130128             [                                                                                                                                                                                                                                                                                                                                                                          ATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAGAACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAGCAATTTCGATGAGAAGGTTCTCAACAGTCAAGAGCCGTGGTTGGTAGAATTTTTCGCCCCTTGGTGTGGTCATTGTAAAAATTTAAAACCTCATTGGGACAAAGCAGCTCGTGAGTTGAAAGGAACTGTTAAAGTAGCCGCTTTGGATGCTACGGTTC                                                                                                                ]


>consensus_8540#0 CAGTTCCAAATTTGGGAGAATGTATCGTTGGACAGTTCTTTTCCTGCTGTTAAGTCCGGC ACTTTGTCTCTTCAATACCAATGATGATGTTATCAAACTCACAGACCAAAACTTTGACAA AGTAATATCAAGCACGGAACTATGGTTTATTATGTTCTATGCATCTTGGTGTGGACACAG TAAAAATGCTGCTCCGGATTGGAAACTATTCGCCACTAATTTTAAGGGTATTATAAAAGT TGCTGCGGTTGATTCAGAAAACAACCCTACAGTAACTCAACGGTTCTCTGTTAAGGGCTT TCCAACAATTTTGATATTTGGAGATAATAAAAACAGTCCTAAACCATATACAGGTGGTAG AGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAG AACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAG CAATTTCGATGAGAAGGTTCTCAACAGTCAAGAGCCGTGGTTGGTAGAATTTTTCGCCCC TTGGTGTGGTCATTGTAAAAATTTAAAACCTCATTGGGACAAAGCAGCTCGTGAGTTGAA AGGAACTGTTAAAGTAGCCGCTTTGGATGCTACGGTTCATAGTCGAATGGCTCAGAAATA TGGGATTCGAGGTTATCCTACCATCAAATNNTTCCCTGCTGGACCGAAAACAGATGACCC TATTGATTACGATGGTGCTCGAAAGTCAGA



consensusID : consensus_8540#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 716
fasta sequence
                              [CCTGGCACGTTCAAACTCACAGACCAAAACTTTGACAAAGTAATATCAAGCAAGGAACTATGGTTTATTATGTTCTATGCATCTTGGTGTGGACACAGTAAAAATGCTGCTCCGGATTGGAAACTATTCGCCACTAATTTTAAGGGTATTATAAAAGTTGCTGCGGTTGATTCAGAAAACAACCCTACAGTAACTCAACGGTTCTCTGTTAAGGGCTTTCCAACAATTTTGATATTTGGAGATAATAAAAACAGTCCTAAACCATATACAGGTGGTAGAGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAGAACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAGCAATTTCGATGAGAAGGTTCTCAACAGTCAAGAGCCGTGGTTGGTAGAATTTTTCGCCCCTTGGTGTGGTCGTTGTAAAAATTTAAAACCTCATTGGGACAAAGCAGCTCGTGAGTTGAAAGGAACTGTTAAAGTAGCCGCTTTGGATGCTACGGTTCATAGTCGAATGGCTCAGAAATATGGGATTCGAGGTTATCCTACTATCAAATTTTTCCCTGCTGGACCGAAACAGATGACCCTATTGATTACGATGGTTGCTCCGAGTTCAGTTGCAATCGTTGCATGGGCCATGGGAAAAGCCGATGTTCTGCTCCAGCA]

[+] EMBL CD115564             [CCTGGCACGTTCAAACTCACAGACCAAAACTTTGACAAAGTAATATCAAGCAAGGAACTATGGTTTATTATGTTCTATGCATCTTGGTGTGGACACAGTAAAAATGCTGCTCCGGATTGGAAACTATTCGCCACTAATTTTAAGGGTATTATAAAAGTTGCTGCGGTTGATTCAGAAAACAACCCTACAGTAACTCAACGGTTCTCTGTTAAGGGCTTTCCAACAATTTTGATATTTGGAGATAATAAAAACAGTCCTAAACCATATACAGGTGGTAGAGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAGAACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAGCAATTTCGATGAGAAGGTTCTCAACAGTCAAGAGCCGTGGTTGGTAGAATTTTTCGCCCCTTGGTGTGGTCGTTGTAAAAATTTAAAACCTCATTGGGACAAAGCAGCTCGTGAGTTGAAAGGAACTGTTAAAGTAGCCGCTTTGGATGCTACGGTTCATAGTCGAATGGCTCAGAAATATGGGATTCGAGGTTATCCTACTATCAAATTTTTC                                                                                                        ]
[+] EMBL AI381057             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ACTGTT AAGTAGCCGC TTAGATGCTACGGTTCATAGTCGAATGGCTCAGAAATATGGGATTCGAGGTTATCCTACCATCAAATTTTTCCCTGCTGGACCGAAACAGATGACCCTATTGATTACGATGGTTGCTCCGAGTTCAGTTGCAATCGTTGCATGGGCCATGGGAAAAGCCGATGTTCTGCTCCAGCA]


>consensus_8540#1 CCTGGCACGTTCAAACTCACAGACCAAAACTTTGACAAAGTAATATCAAGCAAGGAACTA TGGTTTATTATGTTCTATGCATCTTGGTGTGGACACAGTAAAAATGCTGCTCCGGATTGG AAACTATTCGCCACTAATTTTAAGGGTATTATAAAAGTTGCTGCGGTTGATTCAGAAAAC AACCCTACAGTAACTCAACGGTTCTCTGTTAAGGGCTTTCCAACAATTTTGATATTTGGA GATAATAAAAACAGTCCTAAACCATATACAGGTGGTAGAGATATTGATCATCTCAACAAA GAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAGAACTGGTTCTGGATCCTCTGAT GGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAGCAATTTCGATGAGAAGGTTCTC AACAGTCAAGAGCCGTGGTTGGTAGAATTTTTCGCCCCTTGGTGTGGTCGTTGTAAAAAT TTAAAACCTCATTGGGACAAAGCAGCTCGTGAGTTGAAAGGAACTGTTAAAGTAGCCGCT TTGGATGCTACGGTTCATAGTCGAATGGCTCAGAAATATGGGATTCGAGGTTATCCTACT ATCAAATTTTTCCCTGCTGGACCGAAACAGATGACCCTATTGATTACGATGGTTGCTCCG AGTTCAGTTGCAATCGTTGCATGGGCCATGGGAAAAGCCGATGTTCTGCTCCAGCA



consensusID : consensus_8540#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 324
fasta sequence
                              [TATTTGGAGATAATAAAAACGGTCCTAAACCATATACAGGTGGTAGAGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAGAACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAGTTCCAAATTTGGGAGAATGTATCGTTGGACAGTTCTTTTCCTGCTGTTAAGTCCGGCACTTTGTCTCTTCAATACCAATGATGATGTTATCAAACTCACAGACCAAAACTTTGACAAAGTAATATCAAGCAAGGAACTATGGTTNATTATGTTCTATG]

[+] EMBL CD195911             [TATTTGGAGATAATAAAAACGGTCCTAAACCATATACAGGTGGTAGAGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAGAACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAGTTCCAAATTTGGGAGAATGTATCGTTGGACAGTTCTTTTCCTGCTGTTAAGTCCGGCACTTTGTCTCTTCAATACCAATGATGATGTTATCAAACTCACAGACCAAAACTTTGACAAAGTAATATCAAGCAAGGAACTATGGTTNATTATGTTCTATG]


>consensus_8540#2 TATTTGGAGATAATAAAAACGGTCCTAAACCATATACAGGTGGTAGAGATATTGATCATC TCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAGAACTGGTTCTGGAT CCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAGTTCCAAATTTGGGA GAATGTATCGTTGGACAGTTCTTTTCCTGCTGTTAAGTCCGGCACTTTGTCTCTTCAATA CCAATGATGATGTTATCAAACTCACAGACCAAAACTTTGACAAAGTAATATCAAGCAAGG AACTATGGTTNATTATGTTCTATG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8540#0      CAGTTCCAAATTTGGGAGAATGTATCGTTGGACAGTTCTTTTCCTGCTGTTAAGTCCGGC 60
consensus_8540#1      ------------------------------------------------------------
consensus_8540#2      ------------------------------------------------------------
                                                                                  

consensus_8540#0      ACTTTGTCTCTTCAATACCAATGATGATGTTATCAAACTCACAGACCAAAACTTTGACAA 120
consensus_8540#1      ----------------------CCTGGCACGTTCAAACTCACAGACCAAAACTTTGACAA 38
consensus_8540#2      ------------------------------------------------------------
                                                                                  

consensus_8540#0      AGTAATATCAAGCACGGAACTATGGTTTATTATGTTCTATGCATCTTGGTGTGGACACAG 180
consensus_8540#1      AGTAATATCAAGCAAGGAACTATGGTTTATTATGTTCTATGCATCTTGGTGTGGACACAG 98
consensus_8540#2      ------------------------------------------------------------
                                                                                  

consensus_8540#0      TAAAAATGCTGCTCCGGATTGGAAACTATTCGCCACTAATTTTAAGGGTATTATAAAAGT 240
consensus_8540#1      TAAAAATGCTGCTCCGGATTGGAAACTATTCGCCACTAATTTTAAGGGTATTATAAAAGT 158
consensus_8540#2      ------------------------------------------------------------
                                                                                  

consensus_8540#0      TGCTGCGGTTGATTCAGAAAACAACCCTACAGTAACTCAACGGTTCTCTGTTAAGGGCTT 300
consensus_8540#1      TGCTGCGGTTGATTCAGAAAACAACCCTACAGTAACTCAACGGTTCTCTGTTAAGGGCTT 218
consensus_8540#2      ------------------------------------------------------------
                                                                                  

consensus_8540#0      TCCAACAATTTTGATATTTGGAGATAATAAAAACAGTCCTAAACCATATACAGGTGGTAG 360
consensus_8540#1      TCCAACAATTTTGATATTTGGAGATAATAAAAACAGTCCTAAACCATATACAGGTGGTAG 278
consensus_8540#2      --------------TATTTGGAGATAATAAAAACGGTCCTAAACCATATACAGGTGGTAG 46
                                    ******************** *************************

consensus_8540#0      AGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAG 420
consensus_8540#1      AGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAG 338
consensus_8540#2      AGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAG 106
                      ************************************************************

consensus_8540#0      AACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAG 480
consensus_8540#1      AACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAG 398
consensus_8540#2      AACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAG 166
                      ************************************************************

consensus_8540#0      ---CAATTTCGATGAGAAGGTTCTCAACAGTCAAGAGCCGTGGTTGGTAGAATTTTTCGC 537
consensus_8540#1      ---CAATTTCGATGAGAAGGTTCTCAACAGTCAAGAGCCGTGGTTGGTAGAATTTTTCGC 455
consensus_8540#2      TTCCAAATTTGG-GAGAATGTA-TCGTTGGACA-GTTCTTTTCCTGCTGTTAAGTC-CGG 222
                         *** ** *  ***** **  **    * ** *  *  *   ** *   *  *  ** 

consensus_8540#0      CCCTTGGTGTGGTCATTGTAAAAATTTAAAACCTCATTGGGACAAAGCAGCTCGTGAGTT 597
consensus_8540#1      CCCTTGGTGTGGTCGTTGTAAAAATTTAAAACCTCATTGGGACAAAGCAGCTCGTGAGTT 515
consensus_8540#2      CACTTTGTCTCTTCAATACCAATGATGATGTTATCAAACTCACAGACCAAAACTT---TG 279
                      * *** ** *  **  *   **   * *     ***     *** * **   * *   * 

consensus_8540#0      GAAAGGAACTGTTAAAGTAGCCGCTTTGGATG-CTACGGTTCATAGTCGAATGGCTCAGA 656
consensus_8540#1      GAAAGGAACTGTTAAAGTAGCCGCTTTGGATG-CTACGGTTCATAGTCGAATGGCTCAGA 574
consensus_8540#2      ACAAAGTAATATCAAGCAAGGAACTATGGTTNATTATGTTCTATG--------------- 324
                        ** * * * * **   **   ** *** *   ** * *  **                

consensus_8540#0      AATATGGGATTCGAGGTTATCCTACCATCAAATNNTTCCCTGCTGGACCGAAAACAGATG 716
consensus_8540#1      AATATGGGATTCGAGGTTATCCTACTATCAAATTTTTCCCTGCTGGACCGAAA-CAGATG 633
consensus_8540#2      ------------------------------------------------------------
                                                                                  

consensus_8540#0      ACCCTATTGATTACGATGGT-GCTCGAAAGTCAGA------------------------- 750
consensus_8540#1      ACCCTATTGATTACGATGGTTGCTCCGAGTTCAGTTGCAATCGTTGCATGGGCCATGGGA 693
consensus_8540#2      ------------------------------------------------------------
                                                                                  

consensus_8540#0      -----------------------
consensus_8540#1      AAAGCCGATGTTCTGCTCCAGCA 716
consensus_8540#2      -----------------------
                                             




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)