These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8540#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 750 fasta sequence [CAGTTCCAAATTTGGGAGAATGTATCGTTGGACAGTTCTTTTCCTGCTGTTAAGTCCGGCACTTTGTCTCTTCAATACCAATGATGATGTTATCAAACTCACAGACCAAAACTTTGACAAAGTAATATCAAGCACGGAACTATGGTTTATTATGTTCTATGCATCTTGGTGTGGACACAGTAAAAATGCTGCTCCGGATTGGAAACTATTCGCCACTAATTTTAAGGGTATTATAAAAGTTGCTGCGGTTGATTCAGAAAACAACCCTACAGTAACTCAACGGTTCTCTGTTAAGGGCTTTCCAACAATTTTGATATTTGGAGATAATAAAAACAGTCCTAAACCATATACAGGTGGTAGAGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAGAACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAGCAATTTCGATGAGAAGGTTCTCAACAGTCAAGAGCCGTGGTTGGTAGAATTTTTCGCCCCTTGGTGTGGTCATTGTAAAAATTTAAAACCTCATTGGGACAAAGCAGCTCGTGAGTTGAAAGGAACTGTTAAAGTAGCCGCTTTGGATGCTACGGTTCATAGTCGAATGGCTCAGAAATATGGGATTCGAGGTTATCCTACCATCAAATNNTTCCCTGCTGGACCGAAAACAGATGACCCTATTGATTACGATGGTGCTCGAAAGTCAGA] [+] EMBL AI976249 [CAGTTCCAAATTTGGGAGAATGTATCGTTGGACAGTTCTTTTCCTGCTGTTAAGTCCGGCACTTTGTCTCTTCAATACCAATGATGATGTTATCAAACTCACAGACCAAAACTTTGACAAAGTAATATCAAGCACGGAACTATGGTTTATTATGTTCTATGCATCTTGGTGTGGACACAGTAAAAATGCTGCTCCGGATTGGAAACTATTCGCCACTAATTTTAAGGGTATTATAAAAGTTGCTGCGGTTGATTCAGAAAACAACCCTACAGTAACTCAACGGTTCTCTGTTAAGGGCTTTCCAACAATTTTGATATTTGGAGATAATAAAAACAGTCCTAAACCATATACAGGTGGTAGAGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAGAACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAGCAATTTCGATGAGAAGGTTCTCAACAGTCAAGAGCCGTGGCTGGTAGAATTTTTCGCCCCTTGGTGTGGTCATTGTAAAAATTTACAACCTCATTGGGACAAAGCAGCTCGTGAGTTGAAAGGAACTGTTAAAGTAGCCGCTTTGGATGCTACGGTTCATAGT ] [+] EMBL CD112670 [ TGATGATGTTATCAAACTCACAGACCAAAACTTTGACAAAGTAATATCGAGCAAGGAACTATGGTTTATTATGTTCTATGCATCTTGGTGTGGACACAGTAAAAATGCTGCTCCGGATTGGAAACTATTCGCCACTAATTTTAAGGGTATTATAAAAGTTGCTGCGGTTGATTCAGAAAACAACCCTACAGTAACTCAACGGTTCTCTGTTAAGGGCTTTCCAACAATTTTGATATTTGGAGATAATAAAAACAGTCCTAAACCATATACAGGTGGTAGAGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAGAACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAGCAATTTCGATGAGAAGGTTCTCA ] [+] EMBL CD162571 [ ATGGTTTATTATGTTCTATGCATCTTGGTGTGGACACAGTAAAAATGCTGCTCCGGATTGGAAACTATTCGCCACTAATTTTAAGGGTATTATAAAAGTTGCTGCGGTTGATTCAGAAAACAACCCTACAGTAACTCAACGGTTCTCTGTTAAGGGCTTTCCAACAATTTTGATATTTGGAGATAATAAAAACAGTCCTAAACCATATACAGGTGGTAGAGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAGAACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAGCAATTTCGATGAGAAGGTTCTCAACAGTCAAGAGCCGTGGTTGGTAGAATTTTTCGCCCCTTGGTGTGGTCATTGTAAAAATTTAAAACCTCATTGNGACAAAGCAGCTCGTGAGTTGAAAGGAACTGTTAAAGTAGCCGCTTTGGATGCTACGGTTCATAGTCGAATGGCTCAGAAATATGGGATTCGAGGTTATCCTACCATCAAATNNTTCCCTGCTGGACCGAAAACAGATGACCCTATTGATTACGATGGTGCTCGAAAGTCAGA] [-] EMBL CD130128 [ ATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAGAACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAGCAATTTCGATGAGAAGGTTCTCAACAGTCAAGAGCCGTGGTTGGTAGAATTTTTCGCCCCTTGGTGTGGTCATTGTAAAAATTTAAAACCTCATTGGGACAAAGCAGCTCGTGAGTTGAAAGGAACTGTTAAAGTAGCCGCTTTGGATGCTACGGTTC ] consensusID : consensus_8540#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 716 fasta sequence [CCTGGCACGTTCAAACTCACAGACCAAAACTTTGACAAAGTAATATCAAGCAAGGAACTATGGTTTATTATGTTCTATGCATCTTGGTGTGGACACAGTAAAAATGCTGCTCCGGATTGGAAACTATTCGCCACTAATTTTAAGGGTATTATAAAAGTTGCTGCGGTTGATTCAGAAAACAACCCTACAGTAACTCAACGGTTCTCTGTTAAGGGCTTTCCAACAATTTTGATATTTGGAGATAATAAAAACAGTCCTAAACCATATACAGGTGGTAGAGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAGAACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAGCAATTTCGATGAGAAGGTTCTCAACAGTCAAGAGCCGTGGTTGGTAGAATTTTTCGCCCCTTGGTGTGGTCGTTGTAAAAATTTAAAACCTCATTGGGACAAAGCAGCTCGTGAGTTGAAAGGAACTGTTAAAGTAGCCGCTTTGGATGCTACGGTTCATAGTCGAATGGCTCAGAAATATGGGATTCGAGGTTATCCTACTATCAAATTTTTCCCTGCTGGACCGAAACAGATGACCCTATTGATTACGATGGTTGCTCCGAGTTCAGTTGCAATCGTTGCATGGGCCATGGGAAAAGCCGATGTTCTGCTCCAGCA] [+] EMBL CD115564 [CCTGGCACGTTCAAACTCACAGACCAAAACTTTGACAAAGTAATATCAAGCAAGGAACTATGGTTTATTATGTTCTATGCATCTTGGTGTGGACACAGTAAAAATGCTGCTCCGGATTGGAAACTATTCGCCACTAATTTTAAGGGTATTATAAAAGTTGCTGCGGTTGATTCAGAAAACAACCCTACAGTAACTCAACGGTTCTCTGTTAAGGGCTTTCCAACAATTTTGATATTTGGAGATAATAAAAACAGTCCTAAACCATATACAGGTGGTAGAGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAGAACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAGCAATTTCGATGAGAAGGTTCTCAACAGTCAAGAGCCGTGGTTGGTAGAATTTTTCGCCCCTTGGTGTGGTCGTTGTAAAAATTTAAAACCTCATTGGGACAAAGCAGCTCGTGAGTTGAAAGGAACTGTTAAAGTAGCCGCTTTGGATGCTACGGTTCATAGTCGAATGGCTCAGAAATATGGGATTCGAGGTTATCCTACTATCAAATTTTTC ] [+] EMBL AI381057 [ ACTGTT AAGTAGCCGC TTAGATGCTACGGTTCATAGTCGAATGGCTCAGAAATATGGGATTCGAGGTTATCCTACCATCAAATTTTTCCCTGCTGGACCGAAACAGATGACCCTATTGATTACGATGGTTGCTCCGAGTTCAGTTGCAATCGTTGCATGGGCCATGGGAAAAGCCGATGTTCTGCTCCAGCA] consensusID : consensus_8540#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence [TATTTGGAGATAATAAAAACGGTCCTAAACCATATACAGGTGGTAGAGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAGAACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAGTTCCAAATTTGGGAGAATGTATCGTTGGACAGTTCTTTTCCTGCTGTTAAGTCCGGCACTTTGTCTCTTCAATACCAATGATGATGTTATCAAACTCACAGACCAAAACTTTGACAAAGTAATATCAAGCAAGGAACTATGGTTNATTATGTTCTATG] [+] EMBL CD195911 [TATTTGGAGATAATAAAAACGGTCCTAAACCATATACAGGTGGTAGAGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAGAACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAGTTCCAAATTTGGGAGAATGTATCGTTGGACAGTTCTTTTCCTGCTGTTAAGTCCGGCACTTTGTCTCTTCAATACCAATGATGATGTTATCAAACTCACAGACCAAAACTTTGACAAAGTAATATCAAGCAAGGAACTATGGTTNATTATGTTCTATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8540#0 CAGTTCCAAATTTGGGAGAATGTATCGTTGGACAGTTCTTTTCCTGCTGTTAAGTCCGGC 60 consensus_8540#1 ------------------------------------------------------------ consensus_8540#2 ------------------------------------------------------------ consensus_8540#0 ACTTTGTCTCTTCAATACCAATGATGATGTTATCAAACTCACAGACCAAAACTTTGACAA 120 consensus_8540#1 ----------------------CCTGGCACGTTCAAACTCACAGACCAAAACTTTGACAA 38 consensus_8540#2 ------------------------------------------------------------ consensus_8540#0 AGTAATATCAAGCACGGAACTATGGTTTATTATGTTCTATGCATCTTGGTGTGGACACAG 180 consensus_8540#1 AGTAATATCAAGCAAGGAACTATGGTTTATTATGTTCTATGCATCTTGGTGTGGACACAG 98 consensus_8540#2 ------------------------------------------------------------ consensus_8540#0 TAAAAATGCTGCTCCGGATTGGAAACTATTCGCCACTAATTTTAAGGGTATTATAAAAGT 240 consensus_8540#1 TAAAAATGCTGCTCCGGATTGGAAACTATTCGCCACTAATTTTAAGGGTATTATAAAAGT 158 consensus_8540#2 ------------------------------------------------------------ consensus_8540#0 TGCTGCGGTTGATTCAGAAAACAACCCTACAGTAACTCAACGGTTCTCTGTTAAGGGCTT 300 consensus_8540#1 TGCTGCGGTTGATTCAGAAAACAACCCTACAGTAACTCAACGGTTCTCTGTTAAGGGCTT 218 consensus_8540#2 ------------------------------------------------------------ consensus_8540#0 TCCAACAATTTTGATATTTGGAGATAATAAAAACAGTCCTAAACCATATACAGGTGGTAG 360 consensus_8540#1 TCCAACAATTTTGATATTTGGAGATAATAAAAACAGTCCTAAACCATATACAGGTGGTAG 278 consensus_8540#2 --------------TATTTGGAGATAATAAAAACGGTCCTAAACCATATACAGGTGGTAG 46 ******************** ************************* consensus_8540#0 AGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAG 420 consensus_8540#1 AGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAG 338 consensus_8540#2 AGATATTGATCATCTCAACAAAGAGGCTTTGCGAGAACTTACTTCTTTAGTGAAAACAAG 106 ************************************************************ consensus_8540#0 AACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAG 480 consensus_8540#1 AACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAG 398 consensus_8540#2 AACTGGTTCTGGATCCTCTGATGGCTCTGACAAAGACGATGTAATAGAGCTTACGGACAG 166 ************************************************************ consensus_8540#0 ---CAATTTCGATGAGAAGGTTCTCAACAGTCAAGAGCCGTGGTTGGTAGAATTTTTCGC 537 consensus_8540#1 ---CAATTTCGATGAGAAGGTTCTCAACAGTCAAGAGCCGTGGTTGGTAGAATTTTTCGC 455 consensus_8540#2 TTCCAAATTTGG-GAGAATGTA-TCGTTGGACA-GTTCTTTTCCTGCTGTTAAGTC-CGG 222 *** ** * ***** ** ** * ** * * * ** * * * ** consensus_8540#0 CCCTTGGTGTGGTCATTGTAAAAATTTAAAACCTCATTGGGACAAAGCAGCTCGTGAGTT 597 consensus_8540#1 CCCTTGGTGTGGTCGTTGTAAAAATTTAAAACCTCATTGGGACAAAGCAGCTCGTGAGTT 515 consensus_8540#2 CACTTTGTCTCTTCAATACCAATGATGATGTTATCAAACTCACAGACCAAAACTT---TG 279 * *** ** * ** * ** * * *** *** * ** * * * consensus_8540#0 GAAAGGAACTGTTAAAGTAGCCGCTTTGGATG-CTACGGTTCATAGTCGAATGGCTCAGA 656 consensus_8540#1 GAAAGGAACTGTTAAAGTAGCCGCTTTGGATG-CTACGGTTCATAGTCGAATGGCTCAGA 574 consensus_8540#2 ACAAAGTAATATCAAGCAAGGAACTATGGTTNATTATGTTCTATG--------------- 324 ** * * * * ** ** ** *** * ** * * ** consensus_8540#0 AATATGGGATTCGAGGTTATCCTACCATCAAATNNTTCCCTGCTGGACCGAAAACAGATG 716 consensus_8540#1 AATATGGGATTCGAGGTTATCCTACTATCAAATTTTTCCCTGCTGGACCGAAA-CAGATG 633 consensus_8540#2 ------------------------------------------------------------ consensus_8540#0 ACCCTATTGATTACGATGGT-GCTCGAAAGTCAGA------------------------- 750 consensus_8540#1 ACCCTATTGATTACGATGGTTGCTCCGAGTTCAGTTGCAATCGTTGCATGGGCCATGGGA 693 consensus_8540#2 ------------------------------------------------------------ consensus_8540#0 ----------------------- consensus_8540#1 AAAGCCGATGTTCTGCTCCAGCA 716 consensus_8540#2 ----------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||