These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8542#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1074 fasta sequence [TTCGGTCACGAAGCGGCGCACATATCAAAACCTAGGGAATTACCGTTTTGAAATATGGTTGAAGCACTGTTCAGCGTATTGTGGCATTCTGTCTCATTCATCAACCTACAAACTTTAGGAATTTTATTATTCGGAATTTATTTTTATCGTCTAATCAAAATATGTTACAACTACTCAATTGGAAGAATATTATTTTCAAAACGGAAAAACTTAAAATATTCCGGTGAATGGGCAATTGTGACTGGTGCCACTGATGGAATAGGCAAAGCATATGCAGAGGAATTAGCTAATGATGGTTTAAATATTATGTTAATAAGCAGAAATTTGGAAAAATTAAAAAATGTAGCCGACAAAATCGAATCGTT-TTATCATGTGAAAACGCGTATTGTTGTTGCTGATTTCACACAAAATAATATTTATGAGTCAATTGGAAAAGAAATAGCTGAACTATCATCTATTGCTTGCCTTGTGAATAATGTTGGCATGAGTTATCCATATTTTGAAAATTATGCAGATGCTAAATTTATGAATATTAATTTTATTCAAGATTTAATCGCTTGCAATACTCAATCAGTAGCAACAATGACCTATTTAGTCTTACCGAAATTGCTAAAACAAAAGAAGAATAATTCAGCTATTATAAATATTGGTTCATTTTTAGGTTGTTTACCATCACCCTGTAATTCATTATATGGTTCAACGAAAGCTTTTATTCATCATTTTTCAAAATCAATTGCGGCGGAACTCAATCCTCCCGGTAATAAAGTGATTATTCAAACAGTTTGTCCACTTTTTGTTGCAACAGCAATGTCACGTGCAAGCAAGACATCATTCTTTATACCATCACCTCGTGATTATGCTAAAAGTGCATTAAATATGTTAGGTGTGGAAGAATTCACAACAGGTTGTTTTGCTCATGCACTACAAAGTTACGTATTAACTTCACTACCTTTATCATGGGTTTATGATAAGTATAAGAAAATTGCTGCAAAAGCACGTAGAAAATATCAATAAACTTTTTATCTGTTTACAATCTCTATTGTTGTTTCAACTTTCTTTTCAATACATATGTAT] [+] EMBL CD082146 [TTCGGTCACGAAGCGGCGCACATATCAAAACCTAGGGAATTACCGTTTTGAAATATGGTTGAAGCACTGTTCAGCGTATTGTGGCATTCTGTCTCATTCATCAACCTACAAACTTTAGGAATTTTATTATTCGGAATTTATTTTTATCGTCTAATCAAAATATGTTACAACTACTCAATTGGAAGAATATTATTTTCAAAACGGAAAAACTTAAAATATTCCGGTGAATGGGCAATTGTGACTGGTGCCACTGATGGAATAGGCAAAGCATATGCAGAGGAATTAGCTAATGATGGTTTAAATATTATGTTAATAAGCAGAAATTTGGAAAAATTAAAAAATGTAGCCGACAAAATCGAATCGTT TTATCATGTGAAAACGCGTATTGTTGTTGCTGATTTCACACAAAATAATATTTATGAGTCAATTGGAAAAGAAATAGCTGAACTATCATCTATTGCTTGCCTTGTGAATAATGTTGGCATGAGTTATCCATATTTTGAAAATTATGCAGATGCTAAATTTATGAATATTAATTTTATTCAAGATTTAATCGCTTGCAATACTCAATCAGTAGCAACAATGACCTATTTAGTCTTACCGAAATTGCTAANACANAAGAAGAATAATTCAGCTATTATAAATATTGGTTCATTNTTAGGTTGTTTAC ] [+] EMBL CD078951 [ GGCGCACATATCAAAACCTAGGGAATTACCGATTTGAAATATGGTTGAAGCACTGTTCAGCGTATTGTGGCATTCTGTCTCATTCATCAACCTACAAACTTTAGGAATTTTATTATTCGGAATTTATTTTTATCGTCTAATCAAAATATGTTACAACTACTCAATTGGAAGAATATTATTTTCAAAACGGAAAAACTTAAAATATTCCGGTGAATGGGCAATTGTGACTGGTGCCACTGATGGAATAGGCAAAGCATATGCAGAGGAATTAGCTAATGATGGTTTAAATATTATGTTAATAAGCAGAAATTTGGAAAAATTAAAAAATGTAGCCGACAAAATCGAATCGTT TTATCATGTGAAAACGCGTATTGTTGTTGCTGATTTCACACAAAATAATATTTATGAGTCAATTGGAAAAGAAATAGCTGAACTATCATCTATTGCTTGCCTTGTGAATAATGTTGGCATGAGTTATCCATATTTTGAAAATTATGCAGATGCTAAATTTATGAATATTAATTNTATTCAAGATTTAATCGCTTGNCATACTCAATCAGTAGCAACAATGACCTATTTAGTCTTACCGAAATTGCTAAAACA ] [+] EMBL CD078988 [ ATTGTGGCATTCTGTCTCATTCATCAACCTACAAACTTTAGGAATTTTATTATTCGGAATTTATTTTTATCGTCTAATCAAAATATGTTACAACTACTCAATTGGAAGAATATTATTTTCAAAACGGAAAAACTTAAAATATTCCGGTGAATGGGCAATTGTGACTGGTGCCACTGATGGAATAGGCAAAGCATATGCAGAGGAATTAGCTAATGATGGTTTAAATATTATGTTAATAAGCAGAAATTTGGAAAAATTAAAAAATGTAGCCGACAAAATCGAATCGTT TTATCATGTGAAAACGCGTATTGTTGTTGCTGATTTCACACAAAATAATATTTATGAGTCAATTGGAAAAGAAATAGCTGAACTATCATCTATTGCTTGCCTTGTGAATAATGTTGGCATGAGTTATCCATATTTTGAAAATTATGCAGATGCTAAATTTATGAATATTAATTTTATTCAAGATTTAATCGCTTGCAATACTCAATCAGTAGCAACAATGACCTATTTAGTCTTACCGAAATTGCTAAAACAAAAGAAGAATAATTCAGCTATTATAAATATTGGTTCATTTTTAGGTTGTTTA ] [+] EMBL CD083321 [ GAATCGTTCTTATCATGTGAAAACGCGTATTGTTGTTGCTGATTTCACACAAAATAATATTTATGAGTCAATTGGAAAAGAAATAGCTGAACTATCATCTATTGCTTGCCTTGTGAATAATGTTGGCA ] [-] EMBL CD073439 [ CTTGCCTTGTGAATAATGTTGGCATGAGTTATCCATATTTTGAAAATTATGCAGATGCTAAATTTATGAATATTAATTTTATTCAAGATTTAATCGCTTGCAATACTCAATCAGTAGCAACAATGACCTATTTAGTCTTACCGAAATTGCTAAAACAAAAGAAGAATAATTCAGCTATTATAAATATTGGTTCATTTTTAGGTTGTTTACCATCACCCTGTAATTCATTATATGGTTCAACGAAAGCTTTTATTCATCATTTTTCAAAATCAATTGCGGCGGAACTCAATCCTCCCGGTAATAAAGTGATTATTCAAACAGTTTGTCCACTTTTTGTTGCAACAGCAATGTCACGTGCAAGCAAGACATCATTCTTTATACCATCACCTCGTGATTATGCTAAAAGTGCATTAAATATGTTAGGTGTGGAAGAATTCACAACAGGTTGTTTTGCTCATGCACTACAAAGTTACGTATTAACTTCACTACCTTTATCATGGGTTTATGATAAGTATAAGAAAATTGCTGCAAAAGCACGTAGAAAATATCAATAAACTTTTTATCTGTTTACAATCTCTATTGTTGTTTCAACTTTCTTTTCAATACATATGTAT] [-] EMBL CD073405 [ AGTTATCCATATTTTGAAAATTATGCAGATGCTAAATTTATGAATATTAATTTTATTCAAGATTTAATCGCTTGCAATACTCAATCAGTAGCAACAATGACCTATTTAGTCTTACCGAAATTGCTAAAACAAAAGAAGAATAATTCAGCTATTATAAATATTGGTTCATTTTTAGGTTGTTTACCATCACCCTGTAATTCATTATATGGTTCAACGAAAGCTTTTATTCATCATTTTTCAAAATCAATTGCGGCGGAACTCAATCCTCCCGGTAATAAAGTGATTATTCAAACAGTTTGTCCACTTTTTGTTGCAACAGCAATGTCACGTGCAAGCAAGACATCATTCTTTATACCATCACCTCGTGATTATGCTAAAAGTGCATTAAATATGTTAGGTGTGGAAGAATTCACAACAGGTTGTTTTGCTCATGCACTACAAAGTTACGTATTAACTTCACTACCTTTATCATGGGTTTATGATAAGTATAAGAAAATTGCTGCAAAAGCACGTAGAAAATATCAATAAACTTTTTATCTGTTTACAATCTCTATTGTTGTTTCAACTTTCTTTTCAATACATATGTAT] consensusID : consensus_8542#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence [TATGNTAAAAGTGNACTAAATATGTTAGGTGTGGAAGAAATTCACAACAGGTTGTTTTGCTCATGCACTACAAAGTTACGTATTAACTTCATTACCTTTATCATGGGTTTATGATAAGTATAAGACAATTGCTGNAAAAGCACGTAGGAAAATATCAATACNCTNTTCATCTGNGTTACAATCTCTATTGTTGTGTTCAACTNTCTTNCCGATACATATGTATNTCTTTTCGGATATCGAATTCTNAGATATTAT] [+] EMBL SM7121 [TATGNTAAAAGTGNACTAAATATGTTAGGTGTGGAAGAAATTCACAACAGGTTGTTTTGCTCATGCACTACAAAGTTACGTATTAACTTCATTACCTTTATCATGGGTTTATGATAAGTATAAGACAATTGCTGNAAAAGCACGTAGGAAAATATCAATACNCTNTTCATCTGNGTTACAATCTCTATTGTTGTGTTCAACTNTCTTNCCGATACATATGTATNTCTTTTCGGATATCGAATTCTNAGATATTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8542#0 TTCGGTCACGAAGCGGCGCACATATCAAAACCTAGGGAATTACCGTTTTGAAATATGGTT 60 consensus_8542#1 ------------------------------------------------------------ consensus_8542#0 GAAGCACTGTTCAGCGTATTGTGGCATTCTGTCTCATTCATCAACCTACAAACTTTAGGA 120 consensus_8542#1 ------------------------------------------------------------ consensus_8542#0 ATTTTATTATTCGGAATTTATTTTTATCGTCTAATCAAAATATGTTACAACTACTCAATT 180 consensus_8542#1 ------------------------------------------------------------ consensus_8542#0 GGAAGAATATTATTTTCAAAACGGAAAAACTTAAAATATTCCGGTGAATGGGCAATTGTG 240 consensus_8542#1 ------------------------------------------------------------ consensus_8542#0 ACTGGTGCCACTGATGGAATAGGCAAAGCATATGCAGAGGAATTAGCTAATGATGGTTTA 300 consensus_8542#1 ------------------------------------------------------------ consensus_8542#0 AATATTATGTTAATAAGCAGAAATTTGGAAAAATTAAAAAATGTAGCCGACAAAATCGAA 360 consensus_8542#1 ------------------------------------------------------------ consensus_8542#0 TCGTTTTATCATGTGAAAACGCGTATTGTTGTTGCTGATTTCACACAAAATAATATTTAT 420 consensus_8542#1 ------------------------------------------------------------ consensus_8542#0 GAGTCAATTGGAAAAGAAATAGCTGAACTATCATCTATTGCTTGCCTTGTGAATAATGTT 480 consensus_8542#1 ------------------------------------------------------------ consensus_8542#0 GGCATGAGTTATCCATATTTTGAAAATTATGCAGATGCTAAATTTATGAATATTAATTTT 540 consensus_8542#1 ------------------------------------------------------------ consensus_8542#0 ATTCAAGATTTAATCGCTTGCAATACTCAATCAGTAGCAACAATGACCTATTTAGTCTTA 600 consensus_8542#1 ------------------------------------------------------------ consensus_8542#0 CCGAAATTGCTAAAACAAAAGAAGAATAATTCAGCTATTATAAATATTGGTTCATTTTTA 660 consensus_8542#1 ------------------------------------------------------------ consensus_8542#0 GGTTGTTTACCATCACCCTGTAATTCATTATATGGTTCAACGAAAGCTTTTATTCATCAT 720 consensus_8542#1 ------------------------------------------------------------ consensus_8542#0 TTTTCAAAATCAATTGCGGCGGAACTCAATCCTCCCGGTAATAAAGTGATTATTCAAACA 780 consensus_8542#1 ------------------------------------------------------------ consensus_8542#0 GTTTGTCCACTTTTTGTTGCAACAGCAATGTCACGTGCAAGCAAGACATCATTCTTTATA 840 consensus_8542#1 ------------------------------------------------------------ consensus_8542#0 CCATCACCTCGTGATTATGCTAAAAGTGCATTAAATATGTTAGGTGTGGAAGAA-TTCAC 899 consensus_8542#1 ---------------TATGNTAAAAGTGNACTAAATATGTTAGGTGTGGAAGAAATTCAC 45 **** ******** * *********************** ***** consensus_8542#0 AACAGGTTGTTTTGCTCATGCACTACAAAGTTACGTATTAACTTCACTACCTTTATCATG 959 consensus_8542#1 AACAGGTTGTTTTGCTCATGCACTACAAAGTTACGTATTAACTTCATTACCTTTATCATG 105 ********************************************** ************* consensus_8542#0 GGTTTATGATAAGTATAAGAAAATTGCTGCAAAAGCACGTAG-AAAATATCAATAAACTT 1018 consensus_8542#1 GGTTTATGATAAGTATAAGACAATTGCTGNAAAAGCACGTAGGAAAATATCAATACNCTN 165 ******************** ******** ************ ************ ** consensus_8542#0 TTTATCTGT-TTACAATCTCTATTGTTGT-TTCAACTTTCTTTTCAATACATATGTAT-- 1074 consensus_8542#1 TTCATCTGNGTTACAATCTCTATTGTTGTGTTCAACTNTCTTNCCGATACATATGTATNT 225 ** ***** ******************* ******* **** * ************ consensus_8542#0 ------------------------------ consensus_8542#1 CTTTTCGGATATCGAATTCTNAGATATTAT 255 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||