cluster # 8545

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Schistosoma mansoni
cluster # 8545 cluster # 8545 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8545#0 length = 605 sequences # 6

consensus_8545#1 length = 271 sequences # 1

consensusID : consensus_8545#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 605
fasta sequence

                              [GCTACTATTTCCCCCTCTACATATACCGATGTGGGATTGTTAAACCAATTGGGCTACTTGAATTT-AATAGCAGAAAGTTATCGTTGGTGAAATGAATGCCCACTTTAGGGCATGTCTACTATTCGATCTTTATTTTTGTTCTATCCAGCTCATCAATCTTTTTATGTTACACACGCTGTGTTTGCTTCGATTTTCATT-TTTCTCTTTTCTTACTAATCA-TGTATCTGTTAGTATGCGTATTACAAATCACATGCTTTTCGTTTTCTTGTCATGACAGTTCTCACGAAAGTTCCCATTTTTAGATTTATGAATAATAACTTTCATTCACACGAGTTAGTTCTGGATGTTTTTCGTTGAACATTCAAGGCAATTCATTCATGTTTGCTGTTTAACAAGTCTCGTTTTGGTGTGTTAAATACTTTTCAAATTATATCAACATCTGCATTTTTCTTTGTGAATGTAATTAAAATGTCTGATTGGTCCTTAGCTGTAGTCTTAATTTTTCGGGATATCTCTAACATTTTATTGAACTGCCTTGATGAGCATAAGATGTACAAACTCTGTAGCACAAATATATTGAAAGTATCTTAAAAAAAAAAAAAAAA]

[+] EMBL CD082117             [GCTACTATTTCCCCCTCTACATATACCGATGTGGGATTGTTAAACCAATTGGGCTCCTTGAATTT AATAGCAGAAAGTTATCGTTGGTGAAATGAATGCCCACTTTAGGGCATGTCTACTATTCGATCTTTATTTTTGTTCTATCCAGCTCATCAATCTTTTTATGTTACACACGCTGTGTTTGCTTCGATTTTCATT TTTCTCTTTTCTTACTAATCA TGTATCTGTTAGTATGCGTATTACAAATCACATGCTTTTCGTTTTCTTGTCATGACAGTTCTCACGAAAGTTCCCATTTTTAGATTTATGAATAATAACTTTCATTCACACGAGTTAGTTCTGGATGTTTTTCGTTGAACATTCAAGGCAATTCATTCATGTTTGCTGTTTAACAAGTCTCGTTTTGGTGTGTTAAATACTTTTCAAATTATATCAACATCTGCATTTTTCTTTGTGAATGTAATTAAAATGTCTGATTGGTCCTTAGCTGTAGTCTTAATTTTTCGGGATATCTCTAACATTTTATTGAACTGCCTTGATGAGCATAAGATGTACAAACTCTGTAGCACAAATATATTG                          ]
[-] EMBL CD075732             [  tttaATTTCCCCCTCTACATATACCGATGTGGGATTGTTAAACCAATTGGGCTACTTGAATTT AATAGCAGAAAGTTATCGTTGGTGAAATGAATGCCCACTTTAGGGCATGTCTACTATTCGATCTTTATTTTTGTTCTATCCAGCTCATCAATCTTTTTATGTTACACACGCTGTGTTTGCTTCGATTTTCATT TTTCTCTTTTCTTACTAATCA TGTATCTGTTAGTATGCGTATTACAAATCACATGCTTTTCGTTTTCTTGTCATGACAGTTCTCACGAAAGTTCCCATTTTTAGATTTATGAATAATAACTTTCATTCACACGAGTTAGTTCTGGATGTTTTTCGTTGAACATTCAAGGCAATTCATTCATGTTTGCTGTTTAACAAGTCTCGTTTTGGTGTGTTAAATACTTTTCAAATTATATCAACATCTGCATTTTTCTTTGTGAATGTAATTAAAATGTCTGATTGGTCCTTAGCTGTAGTCTTAATTTTTCGGGATATCTCTAACATTTTATTGAACTGCCTTGATGAGCATAAGATGTACAAACTCTGTAGCACAAATATATTGA                         ]
[-] EMBL CD167403             [                                        TAAACCCATTGGGCTACTTGAATTTCAATAGCAGAAAGTTATCGTTGGTGAAATGAATGCCCACTTTAGGGCATGTCTACTATTCGATCCTTATTTTTGTTCTATCCAGCTCATCAATCTTTATATGTTACACACACTGTGTTTGCTTCGATTTTCATTCTTTCTCTTTTCTTACTAATCACTGTATCTGTTAGTATGCGTATT CAAATCACATGCTTTTCGTTTTCTTGTCtac                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL AA999609             [                                                                                                                                                                                                                                                                                                     TCCCATTTTTAGATTTATGAATAATAACTNTCATTCACACGAGTTAGTTCTGGATGTTTTTCGTTGAACATTCAAGGCAATTCATTCATGTTTGCTGTTTAACAAGTCTCGTTTTGGTGTGTTAAATACTTNTCAAATTATATCAACATCTGCATTTTTCTTTGTGAATGTAATTAAAATGTCTGA                                                                                                                                 ]
[-] EMBL AI395477             [                                                                                                                                                                                                                                                                                                                  TTTATTGAT ATAACTTTCATTCACACGA TTAGTTTTGGAT TTTTTCGTTGAACATTCAAGGCAATTCATTCATGTTTGCTGTTTAACAAGTCTCGTTTTGGTGTGTTAAATACTTTTCAAATTATATCAACATCTGCATTTTTCTTTGTGAATGTAATTAAAATGTCTGATTGGTCCTTAGCTGTAGTCTTAATTTTTCGGGATATCTCTAACATTTTATTGAACTGCCTTGATGAGCATAAGATGTACAAACTCTGTAGCACAAATATATTGAAAGTATCTTAAAAAAAAAAAAAAAA]
[-] EMBL AA999463             [                                                                                                                                                                                                                                                                                                                                                                                                                                   TACTTTTCAAATTATTTCAACATCTGCATTTTTCTTTGTGAATGTAATTAAAATGTCTGATTGGCCCTTAGCTGTAGTCTTAATTTTTCGGGATATCTCTAACATTTTATTGAACTGCCTTGATGAGCATAAGATGTACAAACTCTGTAGCACAAATATATTGAAAGTATCTTAAAACAAtt       ]




>consensus_8545#0
GCTACTATTTCCCCCTCTACATATACCGATGTGGGATTGTTAAACCAATTGGGCTACTTG
AATTTAATAGCAGAAAGTTATCGTTGGTGAAATGAATGCCCACTTTAGGGCATGTCTACT
ATTCGATCTTTATTTTTGTTCTATCCAGCTCATCAATCTTTTTATGTTACACACGCTGTG
TTTGCTTCGATTTTCATTTTTCTCTTTTCTTACTAATCATGTATCTGTTAGTATGCGTAT
TACAAATCACATGCTTTTCGTTTTCTTGTCATGACAGTTCTCACGAAAGTTCCCATTTTT
AGATTTATGAATAATAACTTTCATTCACACGAGTTAGTTCTGGATGTTTTTCGTTGAACA
TTCAAGGCAATTCATTCATGTTTGCTGTTTAACAAGTCTCGTTTTGGTGTGTTAAATACT
TTTCAAATTATATCAACATCTGCATTTTTCTTTGTGAATGTAATTAAAATGTCTGATTGG
TCCTTAGCTGTAGTCTTAATTTTTCGGGATATCTCTAACATTTTATTGAACTGCCTTGAT
GAGCATAAGATGTACAAACTCTGTAGCACAAATATATTGAAAGTATCTTAAAAAAAAAAA
AAAAA

consensusID : consensus_8545#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 271
fasta sequence

                              [ATTCCTGGATCTTTAAAGTTGAGCACTCAAGTCAATTCATTTCATGCTTGCTACTTATCAAGTCTCGTGCTGGTGTGTTAAGTACTTACATAATTCTATCAACATCTGCATAATTCTTTGTGAATGTAATTAAAATGACTGACTGGTCCTTAGCTGTAGTCTTAATTTATCGGGATATCTCTAACATTTTATTGAACTGCCATGATGAGCATAAGATGTACAAACTCTGTAGCACAAATATATTGAAAGTATCTTAAAAAAAAAAAAAAAA]

[-] EMBL AI394947             [ATTCCTGGATCTTTAAAGTTGAGCACTCAAGTCAATTCATTTCATGCTTGCTACTTATCAAGTCTCGTGCTGGTGTGTTAAGTACTTACATAATTCTATCAACATCTGCATAATTCTTTGTGAATGTAATTAAAATGACTGACTGGTCCTTAGCTGTAGTCTTAATTTATCGGGATATCTCTAACATTTTATTGAACTGCCATGATGAGCATAAGATGTACAAACTCTGTAGCACAAATATATTGAAAGTATCTTAAAAAAAAAAAAAAAA]




>consensus_8545#1
ATTCCTGGATCTTTAAAGTTGAGCACTCAAGTCAATTCATTTCATGCTTGCTACTTATCA
AGTCTCGTGCTGGTGTGTTAAGTACTTACATAATTCTATCAACATCTGCATAATTCTTTG
TGAATGTAATTAAAATGACTGACTGGTCCTTAGCTGTAGTCTTAATTTATCGGGATATCT
CTAACATTTTATTGAACTGCCATGATGAGCATAAGATGTACAAACTCTGTAGCACAAATA
TATTGAAAGTATCTTAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8545#0      GCTACTATTTCCCCCTCTACATATACCGATGTGGGATTGTTAAACCAATTGGGCTACTTG 60
consensus_8545#1      ------------------------------------------------------------
                                                                                  

consensus_8545#0      AATTTAATAGCAGAAAGTTATCGTTGGTGAAATGAATGCCCACTTTAGGGCATGTCTACT 120
consensus_8545#1      ------------------------------------------------------------
                                                                                  

consensus_8545#0      ATTCGATCTTTATTTTTGTTCTATCCAGCTCATCAATCTTTTTATGTTACACACGCTGTG 180
consensus_8545#1      ------------------------------------------------------------
                                                                                  

consensus_8545#0      TTTGCTTCGATTTTCATTTTTCTCTTTTCTTACTAATCATGTATCTGTTAGTATGCGTAT 240
consensus_8545#1      ------------------------------------------------------------
                                                                                  

consensus_8545#0      TACAAATCACATGCTTTTCGTTTTCTTGTCATGACAGTTCTCACGAAAGTTCCCATTTTT 300
consensus_8545#1      ------------------------------------------------------------
                                                                                  

consensus_8545#0      AGATTTATGAATAATAACTTTCATTCACACGAGTTAGTTCTGGATGTTTTTCGTTGAACA 360
consensus_8545#1      -----------------------------------ATTCCTGGATCTTTAAAGTTGAGCA 25
                                                         * * ****** ***   ***** **

consensus_8545#0      TTCAAGGCAATTCATT-CATGTTTGCTGTTTAACAAGTCTCGTTTTGGTGTGTTAAATAC 419
consensus_8545#1      CTCAAGTCAATTCATTTCATGCTTGCTACTTATCAAGTCTCGTGCTGGTGTGTTAAGTAC 85
                       ***** ********* **** *****  *** **********  *********** ***

consensus_8545#0      TTTTCAAATTATATCAACATCTGCATTTTTCTTTGTGAATGTAATTAAAATGTCTGATTG 479
consensus_8545#1      TTACATAATTCTATCAACATCTGCATAATTCTTTGTGAATGTAATTAAAATGACTGACTG 145
                      **    **** ***************  ************************ **** **

consensus_8545#0      GTCCTTAGCTGTAGTCTTAATTTTTCGGGATATCTCTAACATTTTATTGAACTGCCTTGA 539
consensus_8545#1      GTCCTTAGCTGTAGTCTTAATTTATCGGGATATCTCTAACATTTTATTGAACTGCCATGA 205
                      *********************** ******************************** ***

consensus_8545#0      TGAGCATAAGATGTACAAACTCTGTAGCACAAATATATTGAAAGTATCTTAAAAAAAAAA 599
consensus_8545#1      TGAGCATAAGATGTACAAACTCTGTAGCACAAATATATTGAAAGTATCTTAAAAAAAAAA 265
                      ************************************************************

consensus_8545#0      AAAAAA 605
consensus_8545#1      AAAAAA 271
                      ******