These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8554#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 793 fasta sequence [AGAGTGAGAAGTTAAATTTCTTAATGGAGGTTCTGTTGATGATGAACCCAGTAAAATAAAAAATACACTTCGAGTTATTCGGTTATGTAACAGTTAGTTAGACAGAGGGACGGTGGTTGTCGCTAAATATTACCATAGTAAAAATCTATTGGGAGTTAACAAAGCTATGTAACGGATATGTGCTGAAGATTGACCTCAGATCCACCGCAAGTCAATATTGGTTTCCTTCTCATTTAGGGACTCCATATCCACAACAGGACCACGAACCCGGATAGCAGATTAGGACAGGTTCTCAGGCAACCCAGTTCATACTGACGACAACATGCCTCACGAAAATCTGTGACAGGAGAAAGCTCAGCATGCACTGGTCTACCGCCAAACCAGCGCTCATTCAAATCTTGGACAGCTTTTTCAGCATCTTCTTCACGCCTGAATTTTATATAAACGTTCCCAACTAGATGATCACCAAGATTATCACAAACATTCATTTCCTCTATTTCCCCATACTTCTCCTCACACTCAACAAAAACCTCCTCGAAAAATCCGTCGAAGATTTGCTGAGCTTGGACTTCCGTAAGGTTAATGTGTGACCCATCAGCACTCTGCGCTGAATTTTGAGGAGCTATATACAGGTTTTGCAGCAAAATGGTCTGACCAAAAGACGGTTTGTTATGAAGCCTTGAACACTGCTCTCCGTGACGACATGCACCGATTTTGAAGTAGAACGAGCAGTTCACTTTATCTTTTTCCGTACCAAATATCGATGCTAAATACTCCGCCATGTTCTTAAGCG] [-] EMBL CD140788 [AGAGTGAGAAGTTAAATTTCTTAATGGAGGTTCTGTTGATGATGAACCCAGTAAAATAAAAAATACACTTCGAGTTATTCGGTTATGTAACAGTTAGTTAGACAGAGGGACGGTGGTTGTCGCTAAATATTACCATAGTAAAAATCTATTGGGAGTTAACAAAGCTATGTAACGGATATGTGCTGAAGATTGACCTCAGATCCACCGCAAGTCAATATTGGTTTCCTTCTCATTTAGGGACTCCATATCCACAACAGGACCACGAACCCGGATAGCAGATTAGGACAGGTTCTCAGGCAACCCAGTTCATACTGACGACAACATGCCTCACGAAAATCTGTGACAGGAGAAAGCTCAGCATGCACTGGTCTACCGCCAAACCAGCGCTCATTCAAATCTTGGACAGCTTTTTCAGCATCTTCTTCACGCCTGAA TTTATATAAACGTT ] [+] EMBL CD148397 [ TGCCTCACGAAAATCTGTGACAGGAGAAAGCTCAGCATGCACTGGTCTACCGCCAAACCAGCGCTCATTCAAATCTTGGACAGCTTTTTCAGCATCTTCTTCACGCCTGAATTTTATATAAACGTTCCCAACTAGATGATCACCAAGATTATCACAAACATTCATTTCCTCTATTTCCCCATACTTCTCCTCACACTCAACAAAAACCTCCTCGAAAAATCCGTCGAAGATTTGCTGAGCTTGGACTTCCGTAAGGTTAATGTGTGACCCATCAGCACTCTGCGCTGAATTTTGAGGAGCTATATACAGGTTTTGCAGCAAAATGGTCTGACCAAAAGACGGTTTGTTATGAAGCCTTGAACACTGCTCTCCGTGACGACATGCACCGATTTTGAAGTAGAACGAGCAGTTCACTTTATCTTTTTCCGTACCAAATATCGATGCTAAATACTCCGCCATGTTCTTAAGCG] [+] EMBL CD148414 [ TGCCTCACGAAAATCTGTGACAGGAGAAAGCTCAGCATGCACTGGTCTACCGCCAAACCAGCGCTCATTCAAATCTTGGACAGCTTTTTCAGCATCTTCTTCACGCCTGAATTTTATATAAACGTTCCCAACTAGATGATCACCAAGATTATCACAAACATTCATTTCCTCTATTTCCCCATACTTCTCCTCACACTCAACAAAAACCTCCTCGAAAAATCCGTCGAAGATTTGCTGAGCTTGGACTTCCGTAAGGTTAATGTGTGACCCATCAGCACTCTGCGCTGAATTTTGAGGAGCTATATACAGGTTTTGCAGCAAAATGGTCTGACCAAAAGACGGTTTGTTATGAAGCCTTGAACACTGCTCTCCGTGACGACATGCACCGATTTTGAAGTAGAACGAGCAGTTCACTTTATCTTTTTCCGTACCAAATATCGATGCTAAATACTCCGCCATGTTCTTAAGCG] [-] EMBL CD180709 [ ATTTAAATCCTGAACAGCTTTTTCAGCATCTTCTTCACGCCTGAATTTTATATAAACGTTTCCAACTAGATGATCACCAAGATTATCACACACATTCATTTCTTCTATTTCCCCATACTTCTCCTCACATTCAACAAAGACCTCCTCGAAAAATTCGTCGAAGATTTGCTGAGCTTGGACTTCCGTAAGGTTGATGTGGGACCCATCGGCACTCTGCGCTGTATTTTGAGGAGCTATATACAGATTTTGAAGCAAAATAGTCTGACCGAAAGACGGTTTGTTATGAAGTCTGGAACATTGCTCTCCGTGGCGGCATGCACCGATTTTGAAGTAGAACGAGCAGTTTACTTTATCT ] consensusID : consensus_8554#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 371 fasta sequence [TTTTTTTTTTTTTTTTTTTTTGAAGCGGCAACTACATTTTTATTGATAAATGATGCAGATCAGAAAGCTGTGGTCACATGAGCAAGTGTAAGCGAGCGAAGCAAAGATGATGCATAGTGGAGATGGCTGGGAAGCCAACTCGAGAGCGAAGCGAAAACAGTGCGTATTGGAGATTGGCGGGGAAGCCAACTCACTATGAGCAAGCATTACTCAATATTTATAATCAGACAAAAATGAATGACAGACATATGATGAATAAGATACGAAGTGTGCATACACATGCGCTCATATAAAAAGGTAGTCAAGGTTAATAAGCGAATAAATAACAAGATCAAAATATGACTCATGATGTATAGGAGAATTAGCTTTGG] [+] EMBL AI395499 [TTTTTTTTTTTTTTTTTTTTTGAAGCGGCAACTACATTTTTATTGATAAATGATGCAGATCAGAAAGCTGTGGTCACATGAGCAAGTGTAAGCGAGCGAAGCAAAGATGATGCATAGTGGAGATGGCTGGGAAGCCAACTCGAGAGCGAAGCGAAAACAGTGCGTATTGGAGATTGGCGGGGAAGCCAACTCACTATGAGCAAGCATTACTCAATATTTATAATCAGACAAAAATGAATGACAGACATATGATGAATAAGATACGAAGTGTGCATACACATGCGCTCATATAAAAAGGTAGTCAAGGTTAATAAGCGAATAAATAACAAGATCAAAATATGACTCATGATGTATAGGAGAATTAGCTTTGG] consensusID : consensus_8554#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 369 fasta sequence [TTATATAAACGTTTCCAACTAGATGATCACCAAGATTATCACACACATTCATTTCTTCTATTTCCCCATACTTCTCCTCACATTCAACAAAGACCTCCTCGAAAAATTCGTCGAAGATTTGCTGAGCTTGGACTTCCGTAAGGTTGATGTGGGACCCATCGGCACTCTGCGCTGTATTTTGAGGAGCTATATACAGATTTTGAAGCAAAATAGTCTGACCGAAAGACGGTTTGTTATGAAGTCTGGAACATTGCTCTCCGTGGCGGCATGCACCGATTTTGAAGTAGAACGAGCAGTTTACTTTATCTTTTTCCGTACCAGATATAGACGCTAAGTACTCCGCCATGTTCTTGAGGATTAAATTGCGCC] [-] EMBL CD123204 [TTATATAAACGTTTCCAACTAGATGATCACCAAGATTATCACACACATTCATTTCTTCTATTTCCCCATACTTCTCCTCACATTCAACAAAGACCTCCTCGAAAAATTCGTCGAAGATTTGCTGAGCTTGGACTTCCGTAAGGTTGATGTGGGACCCATCGGCACTCTGCGCTGTATTTTGAGGAGCTATATACAGATTTTGAAGCAAAATAGTCTGACCGAAAGACGGTTTGTTATGAAGTCTGGAACATTGCTCTCCGTGGCGGCATGCACCGATTTTGAAGTAGAACGAGCAGTTTACTTTATCTTTTTCCGTACCAGATATAGACGCTAAGTACTCCGCCATGTTCTTGAGGATTAAATTGCGCC] [-] EMBL CD123244 [TTATATAAACGTTTCCAACTAGATGATCACCAAGATTATCACACACATTCATTTCTTCTATTTCCCCATACTTCTCCTCACATTCAACAAAGACCTCCCCGAAAAATTCGTCGAAGATTTGCTGAGCTTGGACTTCCGTAAGGTTGATGTGGGACCCATCGGCACTCTGCGCTGTATTTTGAGGAGCTATATACAGATTTTGAAGCAAAATAGTCTGACCGAAAGACGGTTTGTTATGAAGTCTGGAACATTGCTCTCCGTGGCGGCATGCACCGATTTTGAAGTAGAACGAGCAGTTTACTTTATCTTTTTCCGTACCAAATATAGACGCTAAGTACTCCGCCATGTTCTTGAGGATTAAATTGCGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8554#0 AGAGTGAGAAGTTAAATTTCTTAATGGAGGTTCTGTTGATGATGAACCCAGTAAAATAAA 60 consensus_8554#2 ------------------------------------------------------------ consensus_8554#1 ------------------------------------------------------------ consensus_8554#0 AAATACACTTCGAGTTATTCGGTTATGTAACAGTTAGTTAGACAGAGGGACGGTGGTTGT 120 consensus_8554#2 ------------------------------------------------------------ consensus_8554#1 ------------------------------------------------------------ consensus_8554#0 CGCTAAATATTACCATAGTAAAAATCTATTGGGAGTTAACAAAGCTATGTAACGGATATG 180 consensus_8554#2 ------------------------------------------------------------ consensus_8554#1 ------------------------------------------------------------ consensus_8554#0 TGCTGAAGATTGACCTCAGATCCACCGCAAGTCAATATTGGTTTCCTTCTCATTTAGGGA 240 consensus_8554#2 ------------------------------------------------------------ consensus_8554#1 ------------------------------------------------------------ consensus_8554#0 CTCCATATCCACAACAGGACCACGAACCCGGATAGCAGATTAGGACAGGTTCTCAGGCAA 300 consensus_8554#2 ------------------------------------------------------------ consensus_8554#1 ------------------------------------------------------------ consensus_8554#0 CCCAGTTCATACTGACGACAACATGCCTCACGAAAATCTGTGACAGGAGAAAGCTCAGCA 360 consensus_8554#2 ------------------------------------------------------------ consensus_8554#1 ------------------------------------------------------------ consensus_8554#0 TGCACTGGTCTACCGCCAAACCAGCGCTCATTCAAATCTTGGACAGCTTTTTCAGCATCT 420 consensus_8554#2 ------------------------------------------------------------ consensus_8554#1 ------------------------------------------------------------ consensus_8554#0 TCTTCACGCCTGAATTTTATATAAACGTTCCCAACTAGATGATCACCAAGATTATCACAA 480 consensus_8554#2 ----------------TTATATAAACGTTTCCAACTAGATGATCACCAAGATTATCACAC 44 consensus_8554#1 TTTTTTTTTTTTTTTTTTTTTGAAGCGG---CAACTACATTTTTATTGATAA-ATGATGC 56 ** * ** ** ****** ** * * * * ** * consensus_8554#0 ACATTCATTTCCTCTATTTCCCCATACTTCTCCTCACACTCAACAAAAACCTCCTCGAAA 540 consensus_8554#2 ACATTCATTTCTTCTATTTCCCCATACTTCTCCTCACATTCAACAAAGACCTCCTCGAAA 104 consensus_8554#1 AGATCAGAAAGCTGTGGTCACATGAGCAAGTGTAAGCGAGCGAAGCAAAGAT----GATG 112 * ** * * * * * * * * * * * * ** consensus_8554#0 AATCCGTCGAAGATTTGCTGAGCTTGGACTTCCGTAAGGTTAATGTGTGACCCATCAGCA 600 consensus_8554#2 AATTCGTCGAAGATTTGCTGAGCTTGGACTTCCGTAAGGTTGATGTGGGACCCATCGGCA 164 consensus_8554#1 CATAGTGGAGATGGCTGGGAAGCCAACTCGAGAGCGAAGCGAAAACAGTGCGTATTGGAG 172 ** * ** *** * * * * * * ** * consensus_8554#0 CTCTGCGCTGAATTTTGAGGAGCTATATACAGGTTTTGCAGCAAAATGGTCTGACCAAAA 660 consensus_8554#2 CTCTGCGCTGTATTTTGAGGAGCTATATACAGATTTTGAAGCAAAATAGTCTGACCGAAA 224 consensus_8554#1 ATTGGCGGGGAAGCC-AACTCACTATGAGCAAGCATTACT-CAATATT-TATAATCAGAC 229 * *** * * * **** ** ** *** ** * * * * * consensus_8554#0 GACGGTTTGTTATGAAGCCTTGAACACTGCTCTCCGTGACG-ACATGCACCGATTTTGAA 719 consensus_8554#2 GACGGTTTGTTATGAAGTCTGGAACATTGCTCTCCGTGGCG-GCATGCACCGATTTTGAA 283 consensus_8554#1 AAAAATGAATGACAGACATATGATGAATAAGATACGAAGTGTGCATACACATGCGCTCAT 289 * * * * * ** * * * ** * *** *** * * consensus_8554#0 GTAGAACGAGCAGTTCACTTTATCTTTTTCCGTACCAAATATCGATGCTAAATAC--TCC 777 consensus_8554#2 GTAGAACGAGCAGTTTACTTTATCTTTTTCCGTACCAGATATAGACGCTAAGTAC--TCC 341 consensus_8554#1 ATAAAAAG-GTAGTCAAGGTTA---ATAAGCGAATAAATAACAAGATCAAAATATGACTC 345 ** ** * * *** * *** * ** * * * * ** ** * consensus_8554#0 GCCATGTTCTTAAGCG------------ 793 consensus_8554#2 GCCATGTTCTTGAGGATTAAATTGCGCC 369 consensus_8554#1 ATGATGTATAGGAGAATTAGCTTTGG-- 371 **** ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||