These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8557#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 576 fasta sequence [TACTACTTTGCAAATAATATTACAGCGTAACATTAAATATTCGCTTCTCGATAACAACACTTAATGATTTATTCAAACATCTTGAAACGGTCAACCATGGGTTGGAGAAAATTGTGCAACTTCTAACTTTAAGGGAAGTTTCATGAAACAACAAACAGTTGTCACTTATTAGTTTCCAAATCCAAGGCTTAATACTGACTGAATATCAAGTCCCCAGTGTGTGCTGAATAAGAAATGTCATAATGCCATTCAACATATAAATGATCTCCCACCATGTAGACCGACATGATAACACAAATACAATACCTTGAGATTCTCGGAAAATCTATAGGCTTAGGTCACAGTTTCAAGATGACTCAACCAGTTTTTCTTCTGCAGAAAAAGAACTTTTTTATTCGAGATTTGAAAAACAATAAACGATGACTAAAACAAATAATCTACTCACCTGAAGCTTTATCTCCACAAACTTTACATGGTTCCCATGACTGGTTGTCATTCGATAAATTTACAGCTGTTTGATTCATATTCAAACCAGTGTTAGGTGATGTACCAACAGGAGTACAGCCATTTAAAAGT] [+] EMBL CD097684 [TACTACTTTGCAAATAATATTACAGCGTAACATTAAATATTCGCTTCTCGATAACAACACTTAATGATTTATTCAAACATCTTGAAACGGTCAACCATGGGTTGGAGAAAATTGTGCAACTTCTAACTTTAAGGGAAGTTTCATGAAACAACAAACAGTTGTCACTTATTAGTTTCCAAATCCAAGGCTTAATACTGACTGAATATCAAGTCCCCAGTGTGTGCTGACTAAGAAATGTCATAATGCCATTCAACATATAAATGATCTCCCACCATGTAGACCGACATGATAACACAAATACAATACCTTGAGATTCTCGGAAAATCTATAGGCTTAGGTCACAGTTTCAAGATGACTCAACCAGTTTTTCTTCTGCAGAAAAAGAACTTTTTTATTCGAGATTTGAAAAACAATAAACGATGACTAAAACAAATAATCTACTCACCTGAAGCTTTATCTCCACAAACTTTACATGGTTCCCATGACTGGTTGTCATTCGATAAATTTACAGCTGTTTGATTCATATTCAAACCAGTGTTAGGTGATGTACCAACAGGAGTACAGCCATTTAAAAGT] [+] EMBL CD097669 [TACTACTTTGCAAATAATATTACAGCGTAACATTAAATATTCGCTTCCCGATAACAACACTTAATGATTTATTCAAACATCTTGAAACGGTCAACCATGGGTTGGAGAAAATTGTGCAACTTCTAACTTTAAGGGAAGTTTCATGAAACAACAAACAGTTGTCACTTATTAGTTTCCAAATCCAAGGCTTAATACTGACTGAATATCAAGTCCCCAGTGTGTGCTGAATAAGAAATGTCATAATGCCATTCAACATATAAATGATCTCCCACCATGTAGACCGACATGATAACACAAATACAATACCTTGAGATTCTCGGAAAATCTATAGGCTTAGGTCACAGTTTCAAGATGACTCAACCAGTTTTTCTTCTGCAGAAAAAGAACTTTTTTATTCGAGATTTGAAAAACAATAAACGATGACTAAAACAAATAATCTACTCACCTGAAGCTTTATCTCCACAAACTTTACATGGTTCCCATGACTGGTTGTCATTCGATAAATTTACAGCTGTTTGATTCATATTCAAACCAGTGTTAGGTGATGTACCAACAGGAGTACAGCCATTT ] [+] EMBL CD097656 [TACTACTTTGCAAATAATATTACAGCGTAACATTAAATATTCGCTTCTCGATAACGACACTTAATGATTTATTCAAACATCTTGAAACGGTCAACCATGGGTTGGAGAAAATTGTGCAACTTCTAACTTTAAGGGAAGTTTCATGAAACAACAAACAGTTGTCACTTATTAGTTTCCAAATCCAAGGCTTAATACTGACTGAATATCAAGTCCCCAGTGTGTGCTGAATAAGAAATGTCATAATGCCATTCAACATATAAATGATCTCCCACCATGTAGACCGACATGATAACACAAATACAATACCTTGAGATTCTCGGAAAATCTATAGGCTTAGGTCACAGTTTCAAGATGACTCAACCAGTTTCTCTTCTGCAGAAAAAGAACTTTTTTATTCGAGATTTGATAAACAATAAACGATGACTAAAACAAATAATCTACTCACCTGAAGCTTTATCTTCACAAACTTTACATGGTTCCCATGAC ] [+] EMBL CD097722 [TACTACTTTGCAAATAATATTACAGCGTAACATTAAATATTCGCTTCTCGATAACAACACTTAATGATTTATTCAAACATCTTGAAACGGTCAACCATGGGTTGGAGAAAATTGTGCAACTTCTAACTTTAAGGGAAGTTTCATGAAACAACAAACAGTTGTCACTTATTAGTTTCCAAATCCAAGGCTTAATACTGACTGAATATCAAGTCCCCAGTGTGTGCTGAATAAGAAATGTCATAATGCCATTCAACATATAAATGATCTCCCACCATGTAGACCGACATGATAACACAAATACAATACCTTGAGATTCTCGGAAAATCTATAGGCTTAGGTCACAGTTTCAAGATGACTCAACCAGTTTTTCTTCTGCAGAAAAAGAACTTTTTTATTCGAGATTTGAAAAACAATAAACGATGAC ] consensusID : consensus_8557#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 503 fasta sequence [CTAACACTGGTTTGAATATGAATCAAACAGCTGTAAATTTATCGAATGACAACCAGTCATGGGAACCATGTAAAGTTTGTGGAGATAAAGCTTCAGGACGACATTACGGTGTTGTATCATGTGAAGGATGTAAAGGATTTTTCAAACGTTCTATTCGAGGACACGTTAGCTACGTATGTCGCAGTGAACAAAATTGTCTTGTAAATAAAGCCTATCGTAATCGTTGCCAATATTGTCGACTACAAAAATGTCTAGCTGTTGGCATGCGTTCAGAAGCTGTGCAAAATGAACGTAGACCTACAAATACATTTGCTTTGAATTTTCTAAACGATAATTCAGGTAATTCAAATTGTACAACTACTGGTGGCAGTAGTAATATGAATAATGGCGGTTCACCTAGTCCTAGTAATAACTGCTGTGTATCTACTGCTTCTATTACTTCTACGACGACGACAACAACAACAGCAACCGTAACAACACCCACTACTACTTCTGCTAATAAT] [+] EMBL CD153024 [CTAACACTGGTTTGAATATGAATCAAACAGCTGTAAATTTATCGAATGACAACCAGTCATGGGAACCATGTAAAGTTTGTGGAGATAAAGCTTCAGGACGACATTACGGTGTTGTATCATGTGAAGGATGTAAAGGATTTTTCAAACGTTCTATTCGAGGACACGTTAGCTACGTATGTCGCAGTGAACAAAATTGTCTTGTAAATAAAGCCTATCGTAATCGTTGCCAATATTGTCGACTACAAAAATGTCTAGCTGTTGGCATGCGTTCAGAAGCTGTGCAAAATGAACGTAGACCTACAAATACATTTGCTTTGAATTTTCTAAACGATAATTCAGGTAATTCAAATTGTACAACTACTGGTGGCAGTAGTAATATGAATAATGGCGGTTCACCTAGTCCTAGTAATAACTGCTGTGTATCTACTGCTTCTATTACTTCTACGACGACGACAACAACAACAGCAACCGTAACAACACCCACTACTACTTCTGCTAATAAT] [+] EMBL CD168281 [ GGTGTTGTATCATGTGAAGGATGTAAAGGATTTTTCAAACGTTCTATTCGAGGACACGTTAGCTACGTATGTCGCAGTGAACAAAATTGTCTTGTAAATAAAGCCTATCGTAATCGTTGCCAATATTGTCGACTACAAAAATGTCTAGCTGTTGGCATGCGTTCAGAAGCTGTGCAAA ] consensusID : consensus_8557#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence [GAAAATTCAAAGCAAATGTATTTGTAGGTCTACGTTCATTTTGCACAGCTTCTGAACGCATGCCAACAGCTAGACATTTTTGTAGTCGACAATATTGGCAACGATTACGATAGGCTTTATTTACAAGACAATTTTGTTCACTGCGACATACGTAGCCAACGTGTCCTCGAATAGAACGTTTGAAAAATCCTTTACATCCTTCACATGATACAACACCGTAATGTCGTCCTATAGAGAAAACGAAATAAATAAAAAACATACATCAGTCACCTGAAAACCAAATAAACGAAGAATACTTTAGTCTCGCGTTATATCATCTCTTGGAACATTAGTAAAAACACGACAACAAAGAAGTCCACTTACTAAGACACCATCAAGTATTGTTGAGATTCTAAGTTGTCATGTATAAATCATGATCCTTCACGATTACAGGTATACCTTGCTGACGAGTGACGACTAGC] [+] EMBL CD124909 [GAAAATTCAAAGCAAATGTATTTGTAGGTCTACGTTCATTTTGCACAGCTTCTGAACGCATGCCAACAGCTAGACATTTTTGTAGTCGACAATATTGGCAACGATTACGATAGGCTTTATTTACAAGACAATTTTGTTCACTGCGACATACGTAGCCAACGTGTCCTCGAATAGAACGTTTGAAAAATCCTTTACATCCTTCACATGATACAACACCGTAATGTCGTCCTATAGAGAAAACGAAATAAATAAAAAACATACATCAGTCACCTGAAAACCAAATAAACGAAGAATACTTTAGTCTCGCGTTATATCATCTCTTGGAACATTAGTAAAAACACGACAACAAAGAAGTCCACTTACTAAGACACCATCAAGTATTGTTGAGATTCTAAGTTGTCATGTATAAATCATGATCCTTCACGATTACAGGTATACCTTGCTGACGAGTGACGACTAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8557#0 ----TACTACTTTGCAAATAATATTA-CAGCGTAACATTAAATATTCGCTTCTCGATAAC 55 consensus_8557#2 --GAAAATTCAAAGCAAATGTATTTG-TAGGTCTACGTTCATTTTGCACAGCTTCTGAAC 57 consensus_8557#1 CTAACACTGGTTTGAATATGAATCAAACAGCTGTAAATTTATCGAATGACAACCAGTCAT 60 * * * * ** ** * ** * * consensus_8557#0 AACACTTA---ATGATTTATTCAAACATCTTGAAACGGTCAACCATGGGTTGGAGAAAAT 112 consensus_8557#2 GCATGCCA---ACAGCT-----AGACATTTTTGTA--GTCGACAATA--TTGGCAACGAT 105 consensus_8557#1 GGGAACCATGTAAAGTTTGTGGAGATAAAGCTTCA-GGACGACATTACGGTGTTGTATCA 119 * * * * * * * * * ** * ** consensus_8557#0 TGTGCAACTTCTAAC---TTTAAGGGAAGTTTCATGAAACAACAAACAGTTGTCACTTAT 169 consensus_8557#2 TACGATAGGCTTTAT---TTACAAGACAATTTTGTTCACTGC--GACATACGTAGCCAAC 160 consensus_8557#1 TGTGAAGGATGTAAAGGATTTTTCAAACGTTCTATTCGAGGAC--ACGTTAGCTACGTAT 177 * * * * ** ** * ** * * * consensus_8557#0 TAGTTTCCAAATCCAAG-GCTTAATACTGACTGAATATCAAGTCCCCAGTGTGTGCTGAA 228 consensus_8557#2 GTGTCCTCGAATAGAAC-GTTTGAAAAATCCT-----TTACATCCTTCACATG------- 207 consensus_8557#1 GTCGCAGTGAACAAAATTGTCTTGTAAATAAAGCCTATCGTAATCGTTGCCAATAT---- 233 ** ** * * * * * consensus_8557#0 TAAGAAATGTCATAATGCCATTCAACATATAAATGATCTCCCACCATGTAGACCGACATG 288 consensus_8557#2 -ATACAACACCGTAATGTCGTCCTATAGAGAAA---------ACGAAATAAATAAAAAAC 257 consensus_8557#1 TGTCGACTACAAAAATGTCTAGCTGTTGGCATGCGTTCAGAAGCTGTGCAAAATGAACGT 293 * **** * * * * * * * consensus_8557#0 ATAACA-CAAATACAATACCTTGAGATTCTCGGAA-AAT-CTATAGGCTTAGGTCACAGT 345 consensus_8557#2 ATACAT-CAGTCACCTGAAAACCAAATAAACGAAG-AATACTTTAGTCTCGCGTTATATC 315 consensus_8557#1 AGACCTACAAATACATTTGCTTTGAATTTTCTAAACGATAATTCAGG--TAATTCAAATT 351 * * ** ** ** * * ** * ** * * * consensus_8557#0 TTCAAGATGACTCAACCAGTTTTTCTTCTGCAGAAAAAGAACTTTTTTATTCGAGATTTG 405 consensus_8557#2 ATCTCTTGGAAC--ATTAGTAAAAACACGACAACAAAGAAGTCCACTTACT-AAGACACC 372 consensus_8557#1 GTACAACTACTGGTGGCAGTAGTAATATGA-ATAATGGCGGTTCACCTAGTCCTAGTAAT 410 * *** * * ** * consensus_8557#0 AAAAACAAT-AAACGATGACTAAAACAAATAATCTACTCACC-TGA-AGCTTTATCTCCA 462 consensus_8557#2 ATCAAGTAT-TGTTGA-GATTCTAAGTTGTCATGTATAAATCATGA-TCCTTCACGATTA 429 consensus_8557#1 AACTGCTGTGTATCTACTGCTTCTATTACTTCTACGACGACGACAACAACAACAGCAACC 470 * * * * * * * * * * * consensus_8557#0 CAAACTTTACATGGTTCCCATGACTGGTTGTCATTCGATAAATTTACAGCTGTTTGATTC 522 consensus_8557#2 CAGG---TATACCTTGCTGACGAGTGACGACTAGC------------------------- 461 consensus_8557#1 GTAACAACACCCACTACT-ACTTCTGCTAATAAT-------------------------- 503 * * * * ** * consensus_8557#0 ATATTCAAACCAGTGTTAGGTGATGTACCAACAGGAGTACAGCCATTTAAAAGT 576 consensus_8557#2 ------------------------------------------------------ consensus_8557#1 ------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||