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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8564#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 939 fasta sequence
[TCAATTATAGAAGTTAAACAATCAAATAGAAATGCTCGTCCAATTATTACATCAATAAATGGAGGAGAAAATGATGATGACAATGATGAAGAAGACAATGAAGACGATGACCTATGTTCTTTTTTTGTTGAACTTTCAGAATTTCTCTCTGGAATATTCATTAACAATTCAGTTGATAGTGAAAGTGGCAATTCTATAGATTCAGACATTAGTCGATCAACTGTATTACATATATGTACCTTAGTGAATAGCTGATGAACTGAGTTAAAAATTGACATTTTATCATTTGATAATAACTTCTTAGTATGATTTGATTGCTTTGTGGAAGGTATATTTCGTGTAGTATCGTTTGTATCACCAAGTAAACTAATGCAATTATGCAATTGTTTTAGGCATAAACTTTCTAATTTATTACGAACTCCTAAACTGATTGGAACATATGGATTAGATGAATCATCAATGAAAAATTGGTCCACATTCAGTAGAACTTGATAAAGATGATCTTCTATGGTAGTAAGTATTCCACTACAAACTTTAGATTCCATATTGACGGATGTTTTACTGGACGATGTATCCCATGGTTGGATCCAAAATATATTGATTGAATCTTTATGAGAATCTAATGTATTTACTTCTAATAAACGACAAAACGTTTCTAAAAATTGATTGTCAGATTGAAAAAGTGAAAATTCGTCTGAAATACACTCTGAAGATGTGTATGATTTGCAAGCAGTTAAATAAGCATGTAGTAATTTCGGTGTAGCTCCTGCTTCATCTAAATATTCAAACTTTTGATCTAGCATTTCATCATAAGCGATTTGAAAAAGCTTCTGTGATTGAGCAAACTGTTGCTGCTGAAAGGCATATCTTCCGAGCACAAAGTTAAGCGATGCAGAAAGATAGCTTTTGGAGAGAGGTATCGAGTTATTAAGAACAAAA]
[+] EMBL CD114270 [TCAATTATAGAAGTTAAACAATCAAATAGAAATGCTCGTCCAATTATTACATCAATAAATGGAGGAGAAAATGATGATGACAATGATGAAGAAGACAATGAAGACGATGACCTATGTTCTTTTTTTGTTGAACTTTCAGAATTTCTCTCTGGAATATTCATTAACAATTCAGTTGATAGTGAAAGTGGCAATTCTATAGATTCAGACATTAGTCGATCAACTGTATTACATATATGTACCTTAGTGAATAGCTGATGAACTGAGTTAAAAATTGACATTTTATCATTTGATAATAACTTCTTAGTATGATTTGATTGCTTTGTGGAAGGTATATTTCGTGTAGTATCGTTTGTATCACCAAGTAAACTAATGCAATTATGCAATTGTTTTAGGCATAAACTTTCTAATTTATTACGAACTCCTAAACTGATTGGAACATATGGATTAGATGAATCATCAATGAAAAATTGGTCCACATTCAGTAGAACTTGATAAAGATGATCTTCTATGGTAGTAAGTATTCCACTACAAACTTTAGATTCCATATTGACGGATGTTTTACTGGACGATGTATCCCATGGTTGGATCCAAAATATATTGATTGAATCTTTATGAGAATCTAATGTATTTACTTCTAATAAACGACNAAACGTTTCTAAAAATTGATTGTCAGATTGAAAAAGTG AAATTCGTCTG AATACACTCTGAAGA GTGTATGATTTGC AGCAGTTAAATAAGC TGTAGT ]
[+] EMBL CD128036 [ GTAGTATCGTTTGTATCACCAAGTAAACTAATACAATTATGCAATTGTTTTAGGCATAAACTTTCTAATTTATTACGAACTCCTAAACTGATTGGAACATATGGATTAGATGAATCATCAATGAAAAATTGGTCCACATTCAGTAGAACTTGATAAAGATGATCTTCTATGGTAGTAAGTATTCCACTACAAACTTTAGATTCCATATTGACGGATGTTTTACTGGACGATGTATCCCATGGTTGGATCCAAAATATATTGATTGAATCTTTATGAGAATCTAATGTATTTACTTCTAATAAACGACAAAACGTTTCTAAAAATTGATTGTCAGATTGAAAAAGTGAAAATTCGTCTGAAATACACTCTGAAGATGTGTATGATTTGCAAGCAGTTAAATAAGCATGTAGTAATTTCGGTGTAGCTCCTGCTTCATCTAAATATT ]
[-] EMBL CD098157 [ CCCATGGTTGGATCCAAAATATATTGATTGAATCTTTATGAGAATCTAATGTATTTACTTCTAATAAACGACAAAACGTTTCTAAAAATTGATTGTCAGATTGAAAAAGTGAAAATTCGTCTGAAATACACTCTGAAGATGTGTATGATTTGCAAGCAGTTAAATAAGCATGTAGTAATTTCGGTGTAGCTCCTGCTTCATCTAAATATTCAAACTTTTGATCTAGCATTTCATCATAAGCGATTTGAAAAAGCTTCTGTGATTGAGCAAACTGTTGCTGCTGAAAGGCATATCTTCCGAGCACAAAGTTAAGCGATGCAGAAAGATAGCTTTTGGAGAGAGGTATCGAGTTATTAAGAACAAAA]
[-] EMBL CD097771 [ CCCATGGTTGGATCCAAAATATATTGATTGAATCTTTATGAGAATCTAATGTATTTACTTCTAATAAACGACAAAACGTTTCTAAAAATTGATTGTCAGATTGAAAAAGTGAAAATTCGTCTGAAATACACTCTGAAGATGTGTATGATTTGCAAGCAGTTAAATAAGCATGTAGTAATTTCGGTGTAGCTCCTGCTTCATCTAAATATTCAAACTTTTGATCTAGCATTTCATCATAAGCGATTTGAAAAAGCTTCTGTGATTGAGCAAACTGTTGCTGCTGAAAGGTATATCTTCCGAGCACAAAGTTAAGCGATGCAGAAAGATAGCTTTTGGAGAGAGGTATCGAGTTATTAAGAACAAAA]
consensusID : consensus_8564#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 532 fasta sequence
[GAGACGAAGATGATAAGTTTGGATTTTTAGAAGTAGACAGCTTTTCAATTATAGAAGTTAAACAATCAAATAGAAATGCTCGTCCAATTATTACATCAATAAATGGTGGAGAAAATGATGATGATAATGATGAAGAAGACAATGAAGACGATGACCTATGTTCTTTTTTTGTTGAACTTTCAGAATTTCTCTCTGGAATATTCATTAACAATTCAGTTGATAGTGAAAGTGGCAATTCTATAGATTCAGACATTAGTCGATCAATTGTATTACATATATGTACCTGAAAAATAAAACAATATGACGAGATATTAAATATAAAAGTAGGCAGATGAAAATTAGAAAGATGGAAAATGTACAAGAATTAGCCAATAAAACAATAAATTCCGCTTTTTTTAAAACATACATTGCCTGAAATTCTTTCGCTTCAATTTAAATGTTTACAGTGTGAGATACTTTTTTATGGAAGAAAATTTATTGATACATTTGGCCACTCACATTTTTAACACGTCTCTATATTGAAAATAATGAA]
[-] EMBL CD089282 [GAGACGAAGATGATAAGTTTGGATTTTTAGAAGTAGACAGCTTTTCAATTATAGAAGTTAAACAATCAAATAGAAATGCTCGTCCAATTATTACATCAATAAATGGTGGAGAAAATGATGATGATAATGATGAAGAAGACAATGAAGACGATGACCTATGTTCTTTTTTTGTTGAACTTTCAGAATTTCTCTCTGGAATATTCATTAACAATTCAGTTGATAGTGAAAGTGGCAATTCTATAGATTCAGACATTAGTCGATCAATTGTATTACATATATGTACCTGAAAAATAAAACAATATGACGAGATATTAAATATAAAAGTAGGCAGATGAAAATTAGAAAGATGGAAAATGTACAAGAATTAGCCAATAAAACAATAAATTCCGCTTTTTTTAAAACATACATTGCCTGAAATTCTTTCGCTTCAATTTAAATGTTTACAGTGTGAGATACTTTTTTATGGAAGAAAATTTATTGATACATTTGGCCACTCACATTTTTAACACGTCTCTATATTGAAAATAATGAA]
[-] EMBL CD089283 [ ATAAGTTTGGATTTTTAGAAGTAGACAGCTTTTCAATTATAGAAGTTAAACAATCAAATAGAAATGCTCGTCCAATTATTACATCAATAAATGGTGGAGAAAATGATGATGATAATGATGAAGAAGACAATGAAGACGATGACCTATGTTCTTTTTTTGTTGAACTTTCAGAATTTCTCTCTGGAATATTCATTAACAATTCAGTTGATAGTGAAAGTGGCAATTCTATAGATTCAGACATTAGTCGATCAATTGTATTACATATATGTACCTGAAAAATAAAACAATATGACGAGATATTAAATATAAAAGTAGGCAGATGAAAATTAGAAAGATGGAAAATGTACAAGAATTAGCCAATAAAACAATAAATTCCGCTTTTTTTAAAACATACATTGCCTGAAATTCTTTCGCTTCAATTTAAATGTTTACAGTGTGAGATACTTTTTTATGGAAGAAAATTTATTGATACATTTGGCCACTCACATTTTTAACACGTCTCTATATTGAAAATAATGAA]
consensusID : consensus_8564#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 473 fasta sequence
[NAAGAGCAAATAGTAGGTATATTTCGTGTTTTTTCGTTTGTATCACCAAGTAAACTACATACAATTATGCAATTGTTTTAGGCATAAACTTTCTAATTTATTACGAACTCCTAAACTGATTGGAACATATGGATTAGATGAATCATCAATGAAAAATTGGTCCACATTCAGTAGAACTTGATAAAGATGATCTTCTATGGTAGTAAGTATTCCACTACAAACTTTAGATTCCATATTGACGGATGTTTTACTGGACGATGTATCCCATGGTTGGATCCAAAATATATTGATTGAATCTTTATGAGAATCTAATGTATTTACTTCTAATAAACGACAAAACGTTTCTAAAAATTGATTGTCAGATTGAAAAAGTGAAAATTCGTCTGAAATACACTCTGAAGATGTGTATGATTTGCAAGCAGTTAAATAAGCATGTAGTAATTTCGGTGTAGCTCCTGCTTCATCTAAATATT]
[+] EMBL CD127942 [NAAGAGCAAATAGTAGGTATATTTCGTGTTTTTTCGTTTGTATCACCAAGTAAACTACATACAATTATGCAATTGTTTTAGGCATAAACTTTCTAATTTATTACGAACTCCTAAACTGATTGGAACATATGGATTAGATGAATCATCAATGAAAAATTGGTCCACATTCAGTAGAACTTGATAAAGATGATCTTCTATGGTAGTAAGTATTCCACTACAAACTTTAGATTCCATATTGACGGATGTTTTACTGGACGATGTATCCCATGGTTGGATCCAAAATATATTGATTGAATCTTTATGAGAATCTAATGTATTTACTTCTAATAAACGACAAAACGTTTCTAAAAATTGATTGTCAGATTGAAAAAGTGAAAATTCGTCTGAAATACACTCTGAAGATGTGTATGATTTGCAAGCAGTTAAATAAGCATGTAGTAATTTCGGTGTAGCTCCTGCTTCATCTAAATATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8564#0 TCAATTATAGAAGTTAAACAATCAAATAGAAATGCTCGTCCAATTATTACATCAATAAAT 60
consensus_8564#2 ------------------------------------------------------------
consensus_8564#1 ------------------------------------------------------------
consensus_8564#0 GGAGGAGAAAATGATGATGACAATGATGAAGAAGACAATGAAGACGATGACCTATGTTCT 120
consensus_8564#2 ------------------------------------------------------------
consensus_8564#1 ------------------------------------------------------------
consensus_8564#0 TTTTTTGTTGAACTTTCAGAATTTCTCTCTGGAATATTCATTAACAATTCAGTTGATAGT 180
consensus_8564#2 ------------------------------------------------------------
consensus_8564#1 ------------------------------------------------------------
consensus_8564#0 GAAAGTGGCAATTCTATAGATTCAGACATTAGTCGATCAACTGTATTACATATATGTACC 240
consensus_8564#2 ------------------------------------------------------------
consensus_8564#1 ------------------------------------------------------------
consensus_8564#0 TTAGTGAATAGCTGATGAACTGAGTTAAAAATTGACATTTTATCATTTGATAATAACTTC 300
consensus_8564#2 ------------------------------------------------------------
consensus_8564#1 ------------------------------------------------------------
consensus_8564#0 TTAGTATGATTTGATTGCTTTGTGGAAGGTATA---TTTCGTGTAGTATCGTTTGTATCA 357
consensus_8564#2 ------------NAAGAGCAAATAGTAGGTATA---TTTCGTGTTTTTTCGTTTGTATCA 45
consensus_8564#1 ------------GAGACGAAGATGATAAGTTTGGATTTTTAGAAGTAGACAGCTTTTCAA 48
* * * ** * *** * * * *
consensus_8564#0 CCAAGTAAACTA-ATGCAATTATGCAATTGTTTTAGGCATAAACTTTCTAATTTATTACG 416
consensus_8564#2 CCAAGTAAACTACATACAATTATGCAATTGTTTTAGGCATAAACTTTCTAATTTATTACG 105
consensus_8564#1 TTATAGAAGTTA--AACAATCAAATAGAAATGCTCGTCC--AATTATTACATCAATAAAT 104
* ** ** **** * * * * * * ** * * ** ** *
consensus_8564#0 AACTCCTAAACTGATTGGAACATATGGATTAGATGAATCATCAA--TGAAAAATTG-GTC 473
consensus_8564#2 AACTCCTAAACTGATTGGAACATATGGATTAGATGAATCATCAA--TGAAAAATTG-GTC 162
consensus_8564#1 GGTGGAGAAAATGAT--GATGATAATGATGAAGAAGACAATGAAGACGATGACCTATGTT 162
*** **** ** *** *** * * ** ** ** * * **
consensus_8564#0 CACATTCAGTAGAACTTGATAAAGATGATCTTCTATGGTA---GTAAGTATTCCACTACA 530
consensus_8564#2 CACATTCAGTAGAACTTGATAAAGATGATCTTCTATGGTA---GTAAGTATTCCACTACA 219
consensus_8564#1 CTTTTTTTGTTGAACTT--TCAGAATTTCTCTCTGGAATATTCATTAACAATTCAGTTGA 220
* ** ** ****** * * ** *** ** * * * * ** * *
consensus_8564#0 AACTTTAGATTCCATATTGACGGAT----GTTTTACTGGACGA--TGTATCCCATGGTTG 584
consensus_8564#2 AACTTTAGATTCCATATTGACGGAT----GTTTTACTGGACGA--TGTATCCCATGGTTG 273
consensus_8564#1 TAGTGAAAGTGGCAATTCTATAGATTCAGACATTAGTCGATCAATTGTATTACATATATG 280
* * * * ** * * *** *** * ** * ***** *** **
consensus_8564#0 GATCC--AAAATATATTGAT-TGAATCTTTATGAGAATCTAATGTATTTACTTCTAAT-- 639
consensus_8564#2 GATCC--AAAATATATTGAT-TGAATCTTTATGAGAATCTAATGTATTTACTTCTAAT-- 328
consensus_8564#1 TACCTGAAAAATAAAACAATATGACGAGATATTAAATATAAAAGTAGGCAGATGAAAATT 340
* * ****** * ** *** *** * * ** *** * * **
consensus_8564#0 -AAACGACAAAACGTTTCTAAAAATTGATTGTCAGATTGAAAAAGTGAAAATTCGTCTGA 698
consensus_8564#2 -AAACGACAAAACGTTTCTAAAAATTGATTGTCAGATTGAAAAAGTGAAAATTCGTCTGA 387
consensus_8564#1 AGAAAGATGGAAAATGTACAAGAATTAGCCAATAAAACAATAAATTCCGCTTTTTTTAAA 400
** ** ** * * ** **** * * * *** * ** * *
consensus_8564#0 A-ATACACTCTGAAGATGTGTATGATTTGCAAGCAGTTAAATA-AGCATGTAGTAATTTC 756
consensus_8564#2 A-ATACACTCTGAAGATGTGTATGATTTGCAAGCAGTTAAATA-AGCATGTAGTAATTTC 445
consensus_8564#1 ACATACATTGCCTGAAATTCTTTCGCTTCAATTTAAATGTTTACAGTGTGAGATACTTTT 460
* ***** * * * * * ** * * * ** ** ** ** ***
consensus_8564#0 GGTGTAGCTCCTGCTTCATCTAAATATTCAAACTTTTGATCTAGCATTTCATCATAAGCG 816
consensus_8564#2 GGTGTAGCTCCTGCTTCATCTAAATATT-------------------------------- 473
consensus_8564#1 T-TATGGAAGAAAATTTATTGATACATTTGGCCACTCACATTTTTAACACGTCTCTATAT 519
* * * ** ** * * ***
consensus_8564#0 ATTTGAAAAAGCTTCTGTGATTGAGCAAACTGTTGCTGCTGAAAGGCATATCTTCCGAGC 876
consensus_8564#2 ------------------------------------------------------------
consensus_8564#1 TGAAAATAATGAA----------------------------------------------- 532
consensus_8564#0 ACAAAGTTAAGCGATGCAGAAAGATAGCTTTTGGAGAGAGGTATCGAGTTATTAAGAACA 936
consensus_8564#2 ------------------------------------------------------------
consensus_8564#1 ------------------------------------------------------------
consensus_8564#0 AAA 939
consensus_8564#2 ---
consensus_8564#1 ---
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||