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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8568#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 884 fasta sequence
[GTTATCCAACGGGCATCATAATATATGTGACCGATCAGAAAATCTGGCTCAAGCTAAATACCGGTTTCAGTTTTGGAGGGAGATTATCGAATATCTATTTGATAGCTCCAATAATTCGTCACCACACCACACTCCTCTTGGACGAGAGCTCAAAGAATCAGTTTCAGGTTTAGTATTATCAAAACAACGATTCTATCAGCTAATCAATTCAAGGGAGCTACACTTTAATAATGTTTTTTTTCCTACTTGCAAAGCAGCTGAAGCGTATTTTGATGATGCCTATGTTCCGATTCATTCTCTACTATCTGAGGCTTATGCATAACTTAACCCAAGAACATGTACTTCGTTTTCTACGTAATGATCCTTCGATGACTAGTACAGTTGATAAACCTATAAAAAAATTAACGTGTGATATTGCTTCTTTGGGTCATTATCATGCTAAACGTGTTTCCCATCTGAGTTCGGAATTAATGATGCAATCACTCTCAACACCAACGTTCAATTCAGCAAAGTTGAAAAAAAAAGATTTGCAACAAAAGCATTTAATACAAAATGTTTTGCCCAAGCTTTTACTACCTCTACTCCCTATAAATAAATATTTGGATTNTTTAGGTTACTCGGCGGATTTCGATTTACGTCTTAATTTCAACACAANTATGATTTATTACCGCTANCATTATGTTGGAATGCTNTGTGGAATANATACCAAGGAACCGAAGCCTANTCTCACTCTATTATNNTCCGTATCTAGTCATGTAATGTGAACAGATGTTAGCCTATGCATAGATGACTGATCGGAATATGNAAAAAGTCAGCTGGTGATNTCCTANATTCCANTACATTGTAGAAAGATGTACTAGCTGGACTATTTGCTACTCTACCTC]
[+] EMBL CD081944 [GTTATCCAACGGGCATCATAATATATGTGACCGATCAGAAAATCTGGCTCAAGCTAAATACCGGTTTCAGTTTTGGAGGGAGATTATCGAATATCTATTTGATAGCTCCAATAATTCGTCACCACACCACACTCCTCTTGGACGAGAGCTCAAAGAATCAGTTTCAGGTTTAGTATTATCAAAACAACGATTCTATCAGCTAATCAATTCAAGGGAGCTACACTTTAATAATGTTTTTTTTCCTACTTGCAAAGCAGCTGAAGCGTATTTTGATGATGCCTATGTTCCGATTCATTCTCTACTATCTGAGGCTTATGCATAACTTAACCCAAGAACATGTACTTCGTTTTCTACGTAATGATCCTTCGATGACTAGTACAGTTGATAAACCTATAAAAAAATTAACGTGTGATATTGCTTCTTTGGGTCATTATCATGCTAAACGTGTTTCCCATCTGAGTTCGGAATTAATGATGCAATCACTCTCAACACCAACGTTCAATTCAGCAAAGTTGAAAAAAAAAGATTTGCAACAAAAGCATTTAATACAAAATGTTTTGCCCAAGCTTTTACTACCTCTACTCCCTATAAATAAATATTTGGATTNTTTAGGTTACTCGGCGGATTTCGATTTACGTCTTAATTTCAACACAANTATGATTTATTACCGCTANCATTATGTTGGAATGCTNTGTGGAATANATACCAAGGAACCGAAGCCTANTCTCACTCTATTATNNTCCGTATCTAGTCATGTAATGTGAACAGATGTTAGCCTATGCATAGATGACTGATCGGAATATGNAAAAAGTCAGCTGGTGATNTCCTANATTCCANTACATTGTAGAAAGATGTACTAGCTGGACTATTTGCTACTCTACCTC]
consensusID : consensus_8568#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 538 fasta sequence
[TATTTCTGCTGTCATATGGAATGTACTTAAAACATCTTTTGATTCGTTTTATGAATGCAAAAACAAAACCTTATTGTCTCAGTATTGTTCATATGATCACGAAAACTATCTGTGTTCACTGTTGCTACCTGGTTCAAGACGTAACTTTGCTTTGGCCTTAAGAGCTTTCAACGTAGAACTAGCTCAAATATGTGACCGATCAGAAAATCTGGCTCAAGCTAAATACCGGTTTCAGTTTTGGAGGGAGATTATCGAATATCTATTTGATAGCTCCAATAATTCGTCACCACACCACACTCCTCTTGGACGAGAGCTCAAAGAATCAGTTTCAGGTTTAGTATTATCAAAACAACGATTCTATCAGCTAATCAATTCAAGGGAGCTACACTTTAATAATGTTTTTTTTCCTACTTGCAAAGCAGCTGAAGCGTATTTTGATGATGCCTATGTTCCGATTCATTCTCTACTATCTGAGGCTTATGCATAACTTAACCCAAGAACATGTACTTCGTTTTCTACGTAATGATCCTTCGATGAC]
[+] EMBL CD139196 [TATTTCTGCTGTCATATGGAATGTACTTAAAACATCTTTTGATTCGTTTTATGAATGCAAAAACAAAACCTTATTGTCTCAGTATTGTTCATATGATCACGAAAACTATCTGTGTTCACTGTTGCTACCTGGTTCAAGACGTAACTTTGCTTTGGCCTTAAGAGCTTTCAACGTAGAACTAGCTCAAATATGTGACCGATCAGAAAATCTGGCTCAAGCTAAATACCGGTTTCAGTTTTGGAGGGAGATTATCGAATATCTATTTGATAGCTCCAAT ]
[-] EMBL CD187318 [ ATTACGAAAACTATCTGTGTTCACTGTTGCTACCTGGTTCAAGACGTAACTTTGCTTTGGCCTTAAGAGCTTTCAACGTAGAACTAGCTCAAATATGTGACCGATCAGAAAATCTGGCTCAAGCTAAATACCGGTTTCAGTTTTGGAGGGAGATTATCGAATATCTATTTGATAGCTCCAATAATTCGTCACCACACCACACTCCTCTTGGACGAGAGCTCAAAGAATCAGTTTCAGGTTTAGTATTATCAAAACAACGATTCTATCAGCTAATCAATTCAAGGGAGCTACACTTTAATAATGTTTTTTTTCCTACTTGCAAAGCAGCTGAAGCGTATTTTGATGATGCCTATGTTCCGATTCATTCTCTACTATCTGAGGCTTATGCATAACTTAACCCAAGAACATGTACTTCGTTTTCTACGTAATGATCCTTCGATGAC]
consensusID : consensus_8568#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence
[TTTCAACACCAACGTTCAATTCAGCAAAGTTGAAAAAAAAAGATTTGCTACAAAAGCATTTAATACAAAATGTTTTGCCCAAGCTTTTACTACCTTTACTCCCTATAAATAAATATTTGGATTTTTTAGGTTACTCGGCGGATTTCGATTTACGTTTTAATTTCAAACCCAATAATGATTTATTTCCGCTACAATTATGTTGGAATGCTTTGTGGAATAAAATACCAAAGGAACCGAAAGCCTAATTTTCACTTTTAATTTATTTTTCCACGTATTTCAGTACATGTAAATGTGAACAAGAATGTTTAGCCTTATGGCATTAGATAGACTGAGTCGGGAATATTGTAAAAAGTTTTAGCTTGTTGTATTTTTCCCTAGTATTTCCCAGTTTACATTTGGTAAGAAAAAGG]
[-] EMBL CD077214 [TTTCAACACCAACGTTCAATTCAGCAAAGTTGAAAAAAAAAGATTTGCTACAAAAGCATTTAATACAAAATGTTTTGCCCAAGCTTTTACTACCTTTACTCCCTATAAATAAATATTTGGATTTTTTAGGTTACTCGGCGGATTTCGATTTACGTTTTAATTTCAAACCCAATAATGATTTATTTCCGCTACAATTATGTTGGAATGCTTTGTGGAATAAAATACCAAAGGAACCGAAAGCCTAATTTTCACTTTTAATTTATTTTTCCACGTATTTCAGTACATGTAAATGTGAACAAGAATGTTTAGCCTTATGGCATTAGATAGACTGAGTCGGGAATATTGTAAAAAGTTTTAGCTTGTTGTATTTTTCCCTAGTATTTCCCAGTTTACATTTGGTAAGAAAAAGG]
consensusID : consensus_8568#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence
[TCAATATCTGTGTTTACGATTATGCACATTTTATATTTATTTGACTAAGTACATCNANTTTACCTTCTAACAAGTAGGATTTGAAATGACTTCATTAAACCCATTGCTTAATCACTTTGGACGAGCTCAGGGAATGGCGAATATGTTACGTAGTTCAGTTTTATTAGCTCAACATAAAAATGTTCTACTATTTCCTTTGGATGTAGTAAATCAACATAACTTAACCCAAGAACATGTACTTCGTTTTCTACGTAATGATCCTTCGATGACTAGTACAGTTGATAAACCTATAAAAAAATTAACGTGTGATATTGCTTCTTTGGGTCATTATCATGCTAAACGTGTTTCCCATCTGAGTTCGGAATTAATGATGCAATCACTCTCAACACCA]
[-] EMBL CD181223 [TCAATATCTGTGTTTACGATTATGCACATTTTATATTTATTTGACTAAGTACATCNANTTTACCTTCTAACAAGTAGGATTTGAAATGACTTCATTAAACCCATTGCTTAATCACTTTGGACGAGCTCAGGGAATGGCGAATATGTTACGTAGTTCAGTTTTATTAGCTCAACATAAAAATGTTCTACTATTTCCTTTGGATGTAGTAAATCAACATAACTTAACCCAAGAACATGTACTTCGTTTTCTACGTAATGATCCTTCGATGACTAGTACAGTTGATAAACCTATAAAAAAATTAACGTGTGATATTGCTTCTTTGGGTCATTATCATGCTAAACGTGTTTCCCATCTGAGTTCGGAATTAATGATGCAATCACTCTCAACACCA]
consensusID : consensus_8568#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence
[GTTTGAGCTCAATAGCTTTTGACGAGAATTTCTATTGAATTTCTATTGAGTTGTTATCTGTAGACCTGGCATTGTGTTCTGATAGTATTTCTGTTGTCATATGGAATGTACTTAAAACATCTTTTATATGTGACCGATTCAGAAAATCTGGCTCAAGCTAAATACCGGTTTCAGTTTTGGAGGGAGATATCGATATCTATTGGTAGCTCCATTATTCGTCACACACACACTCTTTTGGACGGAAGCTAAGAATCGTTTCAGGTTTAGGTTTTCAAACAACGTTTCTTCGCTAATCATTTCAGGGGTGCACTTTAATAGTTTTTTTCCCTCTGCAAACTGTGA]
[+] EMBL AW061397 [GTTTGAGCTCAATAGCTTTTGACGAGAATTTCTATTGAATTTCTATTGAGTTGTTATCTGTAGACCTGGCATTGTGTTCTGATAGTATTTCTGTTGTCATATGGAATGTACTTAAAACATCTTTTATATGTGACCGATTCAGAAAATCTGGCTCAAGCTAAATACCGGTTTCAGTTTTGGAGGGAGATATCGATATCTATTGGTAGCTCCATTATTCGTCACACACACACTCTTTTGGACGGAAGCTAAGAATCGTTTCAGGTTTAGGTTTTCAAACAACGTTTCTTCGCTAATCATTTCAGGGGTGCACTTTAATAGTTTTTTTCCCTCTGCAAACTGTGA]
consensusID : consensus_8568#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence
[TAGATTATCGAATATCTATTTGATAGCTACAATAATTCGTCACCACACCACACTCCTCTTGGACGAGAGCTCAAAGAATCAGTTTCAGGTTTAGTATTATCAAAACAACGATTCTATCAGCTAATCAATTCAAGGGAGCTACACTTTAATAATGTTTTTTTTCCTACTTGCAAAGCAGCTGAAGCGTATTTTGATGATGCCTATGTTCCGATTCATTCTCTACTATCTGAGGCTTATGGTTCTAAATTCGACTGAACCTTTGGATCTTGCTTAAAGAACAGTGTTCTTGC]
[+] EMBL BG932618 [TAGATTATCGAATATCTATTTGATAGCTACAATAATTCGTCACCACACCACACTCCTCTTGGACGAGAGCTCAAAGAATCAGTTTCAGGTTTAGTATTATCAAAACAACGATTCTATCAGCTAATCAATTCAAGGGAGCTACACTTTAATAATGTTTTTTTTCCTACTTGCAAAGCAGCTGAAGCGTATTTTGATGATGCCTATGTTCCGATTCATTCTCTACTATCTGAGGCTTATGGTTCTAAATTCGACTGAACCTTTGGATCTTGCTTAAAGAACAGTGTTCTTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8568#1 TATTTCTGCTGTCATATGGAATGTACTTAAAACATCTTTTGATTCGTTTTATGAATGCAA 60
consensus_8568#5 ------------------------------------------------------------
consensus_8568#4 --------------------------------------------------------GTTT 4
consensus_8568#3 ------------------------------------------------------------
consensus_8568#0 ------------------------------------------------------------
consensus_8568#2 ------------------------------------------------------------
consensus_8568#1 AAACAAAACCTTATTGTCTCAGTATTGTTCATATGATCACGAAAACTATCTGTGTTCACT 120
consensus_8568#5 ------------------------------------------------------------
consensus_8568#4 GAGCTCAATAGCTTTTGACGAGAATTTCTATTGAATTTCTATTGAGTTGTTATCTGTAGA 64
consensus_8568#3 ----TCAATATCTGTGTTTACGA--TTATGCACATTTTATATTTATTTGAC-TAAGTACA 53
consensus_8568#0 ------------------------------------------------------------
consensus_8568#2 --TTTCAACACCAACGTTCAATTCAGCAAAGTTGAAAAAAAAAGATTTGCTACAAAAGCA 58
consensus_8568#1 GTTGCTACCTGGTTCAAGACGTAACTTTGCTTTGGCCTTAAGAGCTTTCAACGTAGAACT 180
consensus_8568#5 ------------------------------------------------------------
consensus_8568#4 CCTGGCATTGTGTTCTGATAGTATTTCTGTTGTCATATGGAATGTACTTA------AAAC 118
consensus_8568#3 TCNANTTTACCTTCTAACAAGTAGGATTTGAAATGACTTCATTAAACCCATTGCTTAATC 113
consensus_8568#0 ----------------------------------------------GTTATCCAACGGGC 14
consensus_8568#2 TTTAATACAAAATGTTTTGCCCAAGCTTT-TACTACCTTTACTCCCTATAA---ATAAAT 114
consensus_8568#1 AGCTCAA-ATATGTGACCGAT-CAGAAAATCTGGCTCAAGCTAAATACCGGTTTCAGTTT 238
consensus_8568#5 ------------------------------------------------------------
consensus_8568#4 ATCTTTT-ATATGTGACCGATTCAGAAAATCTGGCTCAAGCTAAATACCGGTTTCAGTTT 177
consensus_8568#3 ACTTTGG-ACGAGCTCAGGGAATGGCGAATATG--TTACGTAGTTCAGTTTTATTAGCTC 170
consensus_8568#0 ATCATAATATATGTGACCGAT-CAGAAAATCTGGCTCAAGCTAAATACCGGTTTCAGTTT 73
consensus_8568#2 ATTTGGA-TTTTTTAGGTTACTCGGCGGATTT----CGATTTACGTTTTAATTTCAAACC 169
consensus_8568#1 TGGAGGGAGATTATCGAATATCTATTTGATAGCTCCAATAATTCGTCACCACACCACACT 298
consensus_8568#5 ------TAGATTATCGAATATCTATTTGATAGCTACAATAATTCGTCACCACACCACACT 54
consensus_8568#4 TGGAGGGAGAT-ATCGA-TATCTATT-GGTAGCTCCATTA-TTCGTCAC-ACAC-ACACT 231
consensus_8568#3 AACATAAAAATGTTCTACTATTTCCT--TTGGATGTAGTAAATCAACATAACTTAAC--- 225
consensus_8568#0 TGGAGGGAGATTATCGAATATCTATTTGATAGCTCCAATAATTCGTCACCACACCACACT 133
consensus_8568#2 CA----ATAATGATTTA-TTTCCGCTACAATTATGTTGGAATGCTTTGTGGAATAAAATA 224
** * * * * * * * * *
consensus_8568#1 CCTCTTGGACGAGAGCTCAAAGAATCAGTTTCAGGTTTAGTATTATCAAAACAACGATTC 358
consensus_8568#5 CCTCTTGGACGAGAGCTCAAAGAATCAGTTTCAGGTTTAGTATTATCAAAACAACGATTC 114
consensus_8568#4 C-TTTTGGACGGAAGCT--AAGAATC-GTTTCAGGTTTAG-GTTTTCAAA-CAACGTTTC 285
consensus_8568#3 --CCAAGAACATGTACT-------TCGTTTTCTACGTAATGATCCTTCGATGACTAGTAC 276
consensus_8568#0 CCTCTTGGACGAGAGCTCAAAGAATCAGTTTCAGGTTTAGTATTATCAAAACAACGATTC 193
consensus_8568#2 CCAAAGGAACCGAAAGCCTAATTTTCACTTTTAATTT----ATTTTTCCACGTATTTCAG 280
* ** ** *** * * * *
consensus_8568#1 TATCAGCTAATCAATTCAAGGGAGCTACACTTTAATAATGTTTTTTTTCCTAC-TTGCAA 417
consensus_8568#5 TATCAGCTAATCAATTCAAGGGAGCTACACTTTAATAATGTTTTTTTTCCTAC-TTGCAA 173
consensus_8568#4 --TTCGCTAATCATTTCAGGGG---TGCACTTTAATA--GTTTTTTTCCCT---CTGCAA 335
consensus_8568#3 AGTTGATAAACCTATAAAAAAA--TTAACGTGTGATATTGCTTCTTTGGGTCA-TTATCA 333
consensus_8568#0 TATCAGCTAATCAATTCAAGGGAGCTACACTTTAATAATGTTTTTTTTCCTAC-TTGCAA 252
consensus_8568#2 TACATGTAAATGTGAACAAGAATGTTTAGCCTT-ATGGCATTAGATAGACTGAGTCGGGA 339
** * * * ** * * * *
consensus_8568#1 AGCAGCTGAAGCGTATTTTGATGATGCCTATGTTCCGATTCATTCTCTACTATCTGAGGC 477
consensus_8568#5 AGCAGCTGAAGCGTATTTTGATGATGCCTATGTTCCGATTCATTCTCTACTATCTGAGGC 233
consensus_8568#4 ACTG--TGA--------------------------------------------------- 342
consensus_8568#3 TGCTAAACGTGTTTCCCATCTGAGTTCGGAATTAATGATGCAATCACTCTCAACACCA-- 391
consensus_8568#0 AGCAGCTGAAGCGTATTTTGATGATGCCTATGTTCCGATTCATTCTCTACTATCTGAGGC 312
consensus_8568#2 ATATTGTAAAAAGTTTTAGCTTGTTGTATTTTTCCCTAGTATTTCCCAGTTTACATTTGG 399
consensus_8568#1 TTATG--CATAACTTAACCCAAGAACATGTACTTCGTTTTCTACGTAATGATCCTTCGAT 535
consensus_8568#5 TTATGGTTCTAAATTCGACTGAACCTTTGGATCTTGCTTAAAGAACAGTGTTCTTGC--- 290
consensus_8568#4 ------------------------------------------------------------
consensus_8568#3 ------------------------------------------------------------
consensus_8568#0 TTATG--CATAACTTAACCCAAGAACATGTACTTCGTTTTCTACGTAATGATCCTTCGAT 370
consensus_8568#2 TAAGAAAAAGG------------------------------------------------- 410
consensus_8568#1 GAC--------------------------------------------------------- 538
consensus_8568#5 ------------------------------------------------------------
consensus_8568#4 ------------------------------------------------------------
consensus_8568#3 ------------------------------------------------------------
consensus_8568#0 GACTAGTACAGTTGATAAACCTATAAAAAAATTAACGTGTGATATTGCTTCTTTGGGTCA 430
consensus_8568#2 ------------------------------------------------------------
consensus_8568#1 ------------------------------------------------------------
consensus_8568#5 ------------------------------------------------------------
consensus_8568#4 ------------------------------------------------------------
consensus_8568#3 ------------------------------------------------------------
consensus_8568#0 TTATCATGCTAAACGTGTTTCCCATCTGAGTTCGGAATTAATGATGCAATCACTCTCAAC 490
consensus_8568#2 ------------------------------------------------------------
consensus_8568#1 ------------------------------------------------------------
consensus_8568#5 ------------------------------------------------------------
consensus_8568#4 ------------------------------------------------------------
consensus_8568#3 ------------------------------------------------------------
consensus_8568#0 ACCAACGTTCAATTCAGCAAAGTTGAAAAAAAAAGATTTGCAACAAAAGCATTTAATACA 550
consensus_8568#2 ------------------------------------------------------------
consensus_8568#1 ------------------------------------------------------------
consensus_8568#5 ------------------------------------------------------------
consensus_8568#4 ------------------------------------------------------------
consensus_8568#3 ------------------------------------------------------------
consensus_8568#0 AAATGTTTTGCCCAAGCTTTTACTACCTCTACTCCCTATAAATAAATATTTGGATTNTTT 610
consensus_8568#2 ------------------------------------------------------------
consensus_8568#1 ------------------------------------------------------------
consensus_8568#5 ------------------------------------------------------------
consensus_8568#4 ------------------------------------------------------------
consensus_8568#3 ------------------------------------------------------------
consensus_8568#0 AGGTTACTCGGCGGATTTCGATTTACGTCTTAATTTCAACACAANTATGATTTATTACCG 670
consensus_8568#2 ------------------------------------------------------------
consensus_8568#1 ------------------------------------------------------------
consensus_8568#5 ------------------------------------------------------------
consensus_8568#4 ------------------------------------------------------------
consensus_8568#3 ------------------------------------------------------------
consensus_8568#0 CTANCATTATGTTGGAATGCTNTGTGGAATANATACCAAGGAACCGAAGCCTANTCTCAC 730
consensus_8568#2 ------------------------------------------------------------
consensus_8568#1 ------------------------------------------------------------
consensus_8568#5 ------------------------------------------------------------
consensus_8568#4 ------------------------------------------------------------
consensus_8568#3 ------------------------------------------------------------
consensus_8568#0 TCTATTATNNTCCGTATCTAGTCATGTAATGTGAACAGATGTTAGCCTATGCATAGATGA 790
consensus_8568#2 ------------------------------------------------------------
consensus_8568#1 ------------------------------------------------------------
consensus_8568#5 ------------------------------------------------------------
consensus_8568#4 ------------------------------------------------------------
consensus_8568#3 ------------------------------------------------------------
consensus_8568#0 CTGATCGGAATATGNAAAAAGTCAGCTGGTGATNTCCTANATTCCANTACATTGTAGAAA 850
consensus_8568#2 ------------------------------------------------------------
consensus_8568#1 ----------------------------------
consensus_8568#5 ----------------------------------
consensus_8568#4 ----------------------------------
consensus_8568#3 ----------------------------------
consensus_8568#0 GATGTACTAGCTGGACTATTTGCTACTCTACCTC 884
consensus_8568#2 ----------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||