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Schistosoma mansoni
cluster # 8572 cluster # 8572       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8572#0 length = 1130 sequences # 6  
consensus_8572#1 length = 252 sequences # 1  

consensusID : consensus_8572#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1130
fasta sequence
                              [GAATTGAATGGAACAACAATCAACAACCAAAAGCTTTCATCTTAACAGTCCAATTACACTATACATATTGAAGAACAATATTTCTTACATTTTAAAGAATAATTCAATCCAGAAAAGAGAGAAGAAATACAAACATTCGTGTAAACAGAGGAAAAAAGGTAAGCAGAAAAAGAGAGGAGACAAAAGAAACAAATAAAAATGAGCCATAAAGATTGGACAACGAAAATGTTATGAAACACAATACAACAGAATGATGATTATATAATAAGGAGTTCATAGAAAGACAAAAGGTATCTTTTTTAAAGTGGTATACAGAATAACCAAACCCTTTTAAAACGACATTGATAATTTTAATTATACGAAAAGATCTTTCACAAAAATAACCAAAAGAAAAGAAACAAAACTGTGAGAAATATGAGTGATTAGGTACAAAGATGTAAAGATACGAAACACTAGTTATATGCATATATATACGTGACGAGGGGAACGGAGGTGGAAATAGGTGATACAATATGTAATCAATGAAGAATTAACTCATTATGTTGAAGAGTTATTCTTTATTCCAGTTAAATCGGACACCATACTACTTCTAGATGATAAGGCAGTTTGATGACGTTGAGATTTTTGTTGTTGATATAATTGACGATCTAATATTCGATCATTATTTGTCCAACCATCAAATGCTTTATAAGTATAATTTATAAAAGCTAAGTTTTTCTGATAACTTTTCATAGGATCTGTAACATTAGGCCAACTTAAATCAGCATTGGGGAATTCGTCGAAGTTACTAGTATCATCAATTGAACGTATATTCACTGGAATCGCTGCAGGTCGTTCACGTATATGCTCCCAGTCAACTGCATGGAAAAATGGTTGTTTTCGTATATCTTCAATACTCGATAAACGTGTTTCTGCTCCACAACATAAAGATTGTATTAAGTTTCTTGAATGATTACTAATAGGCATTTCAGGTGGAAAAAATAATGCCTCTTTCCAATTCATAATTTTTTTATACGTTTCTTGTGGTGTAGCTGAGCAAAACGGTGGGTAACCTATAAGCATTTCATACATAATAACACCAAGTGACCACAAATCACAAGAATTTGTATAACCATGATGTTGAAATACTT]

[+] EMBL CD146761             [GAATTGAATGGAACAACAATCAACAACCAAAAGCTTTCATCTTAACAGTCCAATTACACTATACATATTGAAGAACAATATTTCTTACATTTTAAAGAATAATTCAATCCAGAAAAGAGAGAAGAAATACAAACATTCGTGTAAACAGAGGAAAAAAGGTAAGCAGAAAAAGAGAGGAGACAAAAGAAACAAATAAAAATGAGCCATAAAGATTGGACAACGAAAATGTTATGAAACACAATACAACAGAATGATGATTATATAATAAGGAGTTCATAGAAAGACAAAAGGTATCTTTTTTAAAGTGGTATACAGAATAACCAAACCCTTTTAAAACGACATTGATAATTTTAATTATACGAAAAGATCTTTCACAAAAATAACCAAAAGAAAAGAAACAAAACTGTGAGAAATATGAGTGATTAGGTACAAAGATGTAAAGATACGAAACACTAGTTATATGCATATATATACGTGACGAGGGGAACGGAGGTGGAAATAGGTGATACAATATGTAATCAATGAAGAATTAACTCATTATGTTGAAGAGTTATTCTTTATTCCAGTTAAATCGGACACCATAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD152637             [                                                                                                                                                                                                                                                                    TATAATAAGGAGTTCATAGAATGACAAAAGGTATCTTTTTTAAAGTGGTATACAGAATAACCAAACCCTTTTAAAGCGACATTGATAATTTTAATTATACGAAAAGATCTTTCACAAAAATAACCAAAAGAAAAGAAACAAAACTGTGAGAAATATGAGTGATTAAGTACAAAGATGTAAAGATACGAAACACTAGTTATATGCATATATATACGTGACGAGGGGAACGGAGGTGGAAATAGGTGATACAATATGTAATCAATGAACAATTAGCTCATTATGTTGAAGAGTTATTCTTTATTCCAGTTAAATGGGACACCATACTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD118644             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TGCATATATATACGTGACGAGGGGAACGGAGGTGGAAATAGGTGATACAATATGTAATCAATGAAGAATTAACTCATTATGTTGAAGAGTTATTCTTTATTCCAGTTAAATCGGACACCATACTACTTCTAGATGATAAGGCAGTTTGATGACGTTGAGATTTTTGTTGTTGATATAATTGACGATCTAATATTCGATCATTATTTGTCCAACCATCAAATGCTTTATAAGTATAATTTATAAAAGCTA                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD155585             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GTGATACAATATGTAATCAATGAAGAATTAACTCATTATGTTGAAGAGTTATTCTTTATTCCAGTTAAATCGGACACCATACTACTTCTAGATGATAAGGCAGTTTGATGACGTTGAGATTTTTGTTGTTGATATAATTGACGATCTAATATTCGATCATTATTTGTCCAACCATCAAATGCTTTATAAGTATAATTTATAAAAGCTAAGTTTTTCTGATAACTTTTCATAGGATCTGTAACATTAGGCCAACTTAAATCAGCATTGGGGAATTCGTCGAAGTTACTAGTATCATCAATTGAACGTATATTCACTGGAATCGCTGCAGGTCGTTC                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD155572             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GTGATACAATATGTAATCAATGAAGAATTAACTCATTATGTTGAAGAGTTATTCTTTATTCCAGTTAAATCGGACACCATACTACTTCTAGATGATAAGGCAGTTTGATGACGTTGAGATTTTTGTTGTTGATATAATTGACGATCTAATATTCGATCATTATTTGTCCAACCATCAAATGCTTTATAAGTATAATTTATAAAAGCTAAGTTTTTCTGATAACTTTTCATAGGATCTGTAACATTAGGCCAACTTAAATCAGCATTGGGGAATTCGTCGAAGTTACTAGTATCATCAATTGAACGTATATTCACTGGAATCGCTGCAGGTCGTTC                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD147811             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGCATTGGGGAATTCGTCGAAGTTACTAGTATCATCAATTGAACGTATATTCACTGGAATCGCTGCAGGTCGTTCACGTATATGCTCCCAGTCAACTGCATGGAAAAATGGTTGTTTTCGTATATCTTCAATACTCGATAAACGTGTTTCTGCTCCACAACATAAAGATTGTATTAAGTTTCTTGAATGATTACTAATAGGCATTTCAGGTGGAAAAAATAATGCCTCTTTCCAATTCATAATTTTTTTATACGTTTCTTGTGGTGTAGCTGAGCAAAACGGTGGGTAACCTATAAGCATTTCATACATAATAACACCAAGTGACCACAAATCACAAGAATTTGTATAACCATGATGTTGAAATACTT]


>consensus_8572#0 GAATTGAATGGAACAACAATCAACAACCAAAAGCTTTCATCTTAACAGTCCAATTACACT ATACATATTGAAGAACAATATTTCTTACATTTTAAAGAATAATTCAATCCAGAAAAGAGA GAAGAAATACAAACATTCGTGTAAACAGAGGAAAAAAGGTAAGCAGAAAAAGAGAGGAGA CAAAAGAAACAAATAAAAATGAGCCATAAAGATTGGACAACGAAAATGTTATGAAACACA ATACAACAGAATGATGATTATATAATAAGGAGTTCATAGAAAGACAAAAGGTATCTTTTT TAAAGTGGTATACAGAATAACCAAACCCTTTTAAAACGACATTGATAATTTTAATTATAC GAAAAGATCTTTCACAAAAATAACCAAAAGAAAAGAAACAAAACTGTGAGAAATATGAGT GATTAGGTACAAAGATGTAAAGATACGAAACACTAGTTATATGCATATATATACGTGACG AGGGGAACGGAGGTGGAAATAGGTGATACAATATGTAATCAATGAAGAATTAACTCATTA TGTTGAAGAGTTATTCTTTATTCCAGTTAAATCGGACACCATACTACTTCTAGATGATAA GGCAGTTTGATGACGTTGAGATTTTTGTTGTTGATATAATTGACGATCTAATATTCGATC ATTATTTGTCCAACCATCAAATGCTTTATAAGTATAATTTATAAAAGCTAAGTTTTTCTG ATAACTTTTCATAGGATCTGTAACATTAGGCCAACTTAAATCAGCATTGGGGAATTCGTC GAAGTTACTAGTATCATCAATTGAACGTATATTCACTGGAATCGCTGCAGGTCGTTCACG TATATGCTCCCAGTCAACTGCATGGAAAAATGGTTGTTTTCGTATATCTTCAATACTCGA TAAACGTGTTTCTGCTCCACAACATAAAGATTGTATTAAGTTTCTTGAATGATTACTAAT AGGCATTTCAGGTGGAAAAAATAATGCCTCTTTCCAATTCATAATTTTTTTATACGTTTC TTGTGGTGTAGCTGAGCAAAACGGTGGGTAACCTATAAGCATTTCATACATAATAACACC AAGTGACCACAAATCACAAGAATTTGTATAACCATGATGTTGAAATACTT



consensusID : consensus_8572#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 252
fasta sequence
                              [ATTGTGATGGATGGGGGGTCGTTCACGTATATGCTCCCAGTCAACTGCATGGAAAAATGGTTGTTTTCGTATATCTTCAATACTCGATAAACGTGTTTCTGCTCCACAACATAAGGATTGTATTAAGTTTCTTGAATGATTACTAATAGGCATTTCAGGTGGAAAAAATAATGCCTCTGTCCAATTCATAATTTTTCTATACGTTTCTTGTGGTGTCGCTGAGCAAAACGGTGGGTAATCTATAAGCATTTC]

[+] EMBL BG931028             [ATTGTGATGGATGGGGGGTCGTTCACGTATATGCTCCCAGTCAACTGCATGGAAAAATGGTTGTTTTCGTATATCTTCAATACTCGATAAACGTGTTTCTGCTCCACAACATAAGGATTGTATTAAGTTTCTTGAATGATTACTAATAGGCATTTCAGGTGGAAAAAATAATGCCTCTGTCCAATTCATAATTTTTCTATACGTTTCTTGTGGTGTCGCTGAGCAAAACGGTGGGTAATCTATAAGCATTTC]


>consensus_8572#1 ATTGTGATGGATGGGGGGTCGTTCACGTATATGCTCCCAGTCAACTGCATGGAAAAATGG TTGTTTTCGTATATCTTCAATACTCGATAAACGTGTTTCTGCTCCACAACATAAGGATTG TATTAAGTTTCTTGAATGATTACTAATAGGCATTTCAGGTGGAAAAAATAATGCCTCTGT CCAATTCATAATTTTTCTATACGTTTCTTGTGGTGTCGCTGAGCAAAACGGTGGGTAATC TATAAGCATTTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8572#0      GAATTGAATGGAACAACAATCAACAACCAAAAGCTTTCATCTTAACAGTCCAATTACACT 60
consensus_8572#1      ------------------------------------------------------------
                                                                                  

consensus_8572#0      ATACATATTGAAGAACAATATTTCTTACATTTTAAAGAATAATTCAATCCAGAAAAGAGA 120
consensus_8572#1      ------------------------------------------------------------
                                                                                  

consensus_8572#0      GAAGAAATACAAACATTCGTGTAAACAGAGGAAAAAAGGTAAGCAGAAAAAGAGAGGAGA 180
consensus_8572#1      ------------------------------------------------------------
                                                                                  

consensus_8572#0      CAAAAGAAACAAATAAAAATGAGCCATAAAGATTGGACAACGAAAATGTTATGAAACACA 240
consensus_8572#1      ------------------------------------------------------------
                                                                                  

consensus_8572#0      ATACAACAGAATGATGATTATATAATAAGGAGTTCATAGAAAGACAAAAGGTATCTTTTT 300
consensus_8572#1      ------------------------------------------------------------
                                                                                  

consensus_8572#0      TAAAGTGGTATACAGAATAACCAAACCCTTTTAAAACGACATTGATAATTTTAATTATAC 360
consensus_8572#1      ------------------------------------------------------------
                                                                                  

consensus_8572#0      GAAAAGATCTTTCACAAAAATAACCAAAAGAAAAGAAACAAAACTGTGAGAAATATGAGT 420
consensus_8572#1      ------------------------------------------------------------
                                                                                  

consensus_8572#0      GATTAGGTACAAAGATGTAAAGATACGAAACACTAGTTATATGCATATATATACGTGACG 480
consensus_8572#1      ------------------------------------------------------------
                                                                                  

consensus_8572#0      AGGGGAACGGAGGTGGAAATAGGTGATACAATATGTAATCAATGAAGAATTAACTCATTA 540
consensus_8572#1      ------------------------------------------------------------
                                                                                  

consensus_8572#0      TGTTGAAGAGTTATTCTTTATTCCAGTTAAATCGGACACCATACTACTTCTAGATGATAA 600
consensus_8572#1      ------------------------------------------------------------
                                                                                  

consensus_8572#0      GGCAGTTTGATGACGTTGAGATTTTTGTTGTTGATATAATTGACGATCTAATATTCGATC 660
consensus_8572#1      ------------------------------------------------------------
                                                                                  

consensus_8572#0      ATTATTTGTCCAACCATCAAATGCTTTATAAGTATAATTTATAAAAGCTAAGTTTTTCTG 720
consensus_8572#1      ------------------------------------------------------------
                                                                                  

consensus_8572#0      ATAACTTTTCATAGGATCTGTAACATTAGGCCAACTTAAATCAGCATTGGGGAATTCGTC 780
consensus_8572#1      ------------------------------------------------------------
                                                                                  

consensus_8572#0      GAAGTTACTAGTATCATCAATTGAACGTATATTCACTGGAATCGCTGCAGG-TCGTTCAC 839
consensus_8572#1      ----------------------------------ATTGTGATGGATGGGGGGTCGTTCAC 26
                                                        * **  ** * **  ** ********

consensus_8572#0      GTATATGCTCCCAGTCAACTGCATGGAAAAATGGTTGTTTTCGTATATCTTCAATACTCG 899
consensus_8572#1      GTATATGCTCCCAGTCAACTGCATGGAAAAATGGTTGTTTTCGTATATCTTCAATACTCG 86
                      ************************************************************

consensus_8572#0      ATAAACGTGTTTCTGCTCCACAACATAAAGATTGTATTAAGTTTCTTGAATGATTACTAA 959
consensus_8572#1      ATAAACGTGTTTCTGCTCCACAACATAAGGATTGTATTAAGTTTCTTGAATGATTACTAA 146
                      **************************** *******************************

consensus_8572#0      TAGGCATTTCAGGTGGAAAAAATAATGCCTCTTTCCAATTCATAATTTTTTTATACGTTT 1019
consensus_8572#1      TAGGCATTTCAGGTGGAAAAAATAATGCCTCTGTCCAATTCATAATTTTTCTATACGTTT 206
                      ******************************** ***************** *********

consensus_8572#0      CTTGTGGTGTAGCTGAGCAAAACGGTGGGTAACCTATAAGCATTTCATACATAATAACAC 1079
consensus_8572#1      CTTGTGGTGTCGCTGAGCAAAACGGTGGGTAATCTATAAGCATTTC-------------- 252
                      ********** ********************* *************              

consensus_8572#0      CAAGTGACCACAAATCACAAGAATTTGTATAACCATGATGTTGAAATACTT 1130
consensus_8572#1      ---------------------------------------------------
                                                                         




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)