These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8572#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1130 fasta sequence [GAATTGAATGGAACAACAATCAACAACCAAAAGCTTTCATCTTAACAGTCCAATTACACTATACATATTGAAGAACAATATTTCTTACATTTTAAAGAATAATTCAATCCAGAAAAGAGAGAAGAAATACAAACATTCGTGTAAACAGAGGAAAAAAGGTAAGCAGAAAAAGAGAGGAGACAAAAGAAACAAATAAAAATGAGCCATAAAGATTGGACAACGAAAATGTTATGAAACACAATACAACAGAATGATGATTATATAATAAGGAGTTCATAGAAAGACAAAAGGTATCTTTTTTAAAGTGGTATACAGAATAACCAAACCCTTTTAAAACGACATTGATAATTTTAATTATACGAAAAGATCTTTCACAAAAATAACCAAAAGAAAAGAAACAAAACTGTGAGAAATATGAGTGATTAGGTACAAAGATGTAAAGATACGAAACACTAGTTATATGCATATATATACGTGACGAGGGGAACGGAGGTGGAAATAGGTGATACAATATGTAATCAATGAAGAATTAACTCATTATGTTGAAGAGTTATTCTTTATTCCAGTTAAATCGGACACCATACTACTTCTAGATGATAAGGCAGTTTGATGACGTTGAGATTTTTGTTGTTGATATAATTGACGATCTAATATTCGATCATTATTTGTCCAACCATCAAATGCTTTATAAGTATAATTTATAAAAGCTAAGTTTTTCTGATAACTTTTCATAGGATCTGTAACATTAGGCCAACTTAAATCAGCATTGGGGAATTCGTCGAAGTTACTAGTATCATCAATTGAACGTATATTCACTGGAATCGCTGCAGGTCGTTCACGTATATGCTCCCAGTCAACTGCATGGAAAAATGGTTGTTTTCGTATATCTTCAATACTCGATAAACGTGTTTCTGCTCCACAACATAAAGATTGTATTAAGTTTCTTGAATGATTACTAATAGGCATTTCAGGTGGAAAAAATAATGCCTCTTTCCAATTCATAATTTTTTTATACGTTTCTTGTGGTGTAGCTGAGCAAAACGGTGGGTAACCTATAAGCATTTCATACATAATAACACCAAGTGACCACAAATCACAAGAATTTGTATAACCATGATGTTGAAATACTT] [+] EMBL CD146761 [GAATTGAATGGAACAACAATCAACAACCAAAAGCTTTCATCTTAACAGTCCAATTACACTATACATATTGAAGAACAATATTTCTTACATTTTAAAGAATAATTCAATCCAGAAAAGAGAGAAGAAATACAAACATTCGTGTAAACAGAGGAAAAAAGGTAAGCAGAAAAAGAGAGGAGACAAAAGAAACAAATAAAAATGAGCCATAAAGATTGGACAACGAAAATGTTATGAAACACAATACAACAGAATGATGATTATATAATAAGGAGTTCATAGAAAGACAAAAGGTATCTTTTTTAAAGTGGTATACAGAATAACCAAACCCTTTTAAAACGACATTGATAATTTTAATTATACGAAAAGATCTTTCACAAAAATAACCAAAAGAAAAGAAACAAAACTGTGAGAAATATGAGTGATTAGGTACAAAGATGTAAAGATACGAAACACTAGTTATATGCATATATATACGTGACGAGGGGAACGGAGGTGGAAATAGGTGATACAATATGTAATCAATGAAGAATTAACTCATTATGTTGAAGAGTTATTCTTTATTCCAGTTAAATCGGACACCATAC ] [+] EMBL CD152637 [ TATAATAAGGAGTTCATAGAATGACAAAAGGTATCTTTTTTAAAGTGGTATACAGAATAACCAAACCCTTTTAAAGCGACATTGATAATTTTAATTATACGAAAAGATCTTTCACAAAAATAACCAAAAGAAAAGAAACAAAACTGTGAGAAATATGAGTGATTAAGTACAAAGATGTAAAGATACGAAACACTAGTTATATGCATATATATACGTGACGAGGGGAACGGAGGTGGAAATAGGTGATACAATATGTAATCAATGAACAATTAGCTCATTATGTTGAAGAGTTATTCTTTATTCCAGTTAAATGGGACACCATACTA ] [+] EMBL CD118644 [ TGCATATATATACGTGACGAGGGGAACGGAGGTGGAAATAGGTGATACAATATGTAATCAATGAAGAATTAACTCATTATGTTGAAGAGTTATTCTTTATTCCAGTTAAATCGGACACCATACTACTTCTAGATGATAAGGCAGTTTGATGACGTTGAGATTTTTGTTGTTGATATAATTGACGATCTAATATTCGATCATTATTTGTCCAACCATCAAATGCTTTATAAGTATAATTTATAAAAGCTA ] [-] EMBL CD155585 [ GTGATACAATATGTAATCAATGAAGAATTAACTCATTATGTTGAAGAGTTATTCTTTATTCCAGTTAAATCGGACACCATACTACTTCTAGATGATAAGGCAGTTTGATGACGTTGAGATTTTTGTTGTTGATATAATTGACGATCTAATATTCGATCATTATTTGTCCAACCATCAAATGCTTTATAAGTATAATTTATAAAAGCTAAGTTTTTCTGATAACTTTTCATAGGATCTGTAACATTAGGCCAACTTAAATCAGCATTGGGGAATTCGTCGAAGTTACTAGTATCATCAATTGAACGTATATTCACTGGAATCGCTGCAGGTCGTTC ] [-] EMBL CD155572 [ GTGATACAATATGTAATCAATGAAGAATTAACTCATTATGTTGAAGAGTTATTCTTTATTCCAGTTAAATCGGACACCATACTACTTCTAGATGATAAGGCAGTTTGATGACGTTGAGATTTTTGTTGTTGATATAATTGACGATCTAATATTCGATCATTATTTGTCCAACCATCAAATGCTTTATAAGTATAATTTATAAAAGCTAAGTTTTTCTGATAACTTTTCATAGGATCTGTAACATTAGGCCAACTTAAATCAGCATTGGGGAATTCGTCGAAGTTACTAGTATCATCAATTGAACGTATATTCACTGGAATCGCTGCAGGTCGTTC ] [+] EMBL CD147811 [ AGCATTGGGGAATTCGTCGAAGTTACTAGTATCATCAATTGAACGTATATTCACTGGAATCGCTGCAGGTCGTTCACGTATATGCTCCCAGTCAACTGCATGGAAAAATGGTTGTTTTCGTATATCTTCAATACTCGATAAACGTGTTTCTGCTCCACAACATAAAGATTGTATTAAGTTTCTTGAATGATTACTAATAGGCATTTCAGGTGGAAAAAATAATGCCTCTTTCCAATTCATAATTTTTTTATACGTTTCTTGTGGTGTAGCTGAGCAAAACGGTGGGTAACCTATAAGCATTTCATACATAATAACACCAAGTGACCACAAATCACAAGAATTTGTATAACCATGATGTTGAAATACTT] consensusID : consensus_8572#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 252 fasta sequence [ATTGTGATGGATGGGGGGTCGTTCACGTATATGCTCCCAGTCAACTGCATGGAAAAATGGTTGTTTTCGTATATCTTCAATACTCGATAAACGTGTTTCTGCTCCACAACATAAGGATTGTATTAAGTTTCTTGAATGATTACTAATAGGCATTTCAGGTGGAAAAAATAATGCCTCTGTCCAATTCATAATTTTTCTATACGTTTCTTGTGGTGTCGCTGAGCAAAACGGTGGGTAATCTATAAGCATTTC] [+] EMBL BG931028 [ATTGTGATGGATGGGGGGTCGTTCACGTATATGCTCCCAGTCAACTGCATGGAAAAATGGTTGTTTTCGTATATCTTCAATACTCGATAAACGTGTTTCTGCTCCACAACATAAGGATTGTATTAAGTTTCTTGAATGATTACTAATAGGCATTTCAGGTGGAAAAAATAATGCCTCTGTCCAATTCATAATTTTTCTATACGTTTCTTGTGGTGTCGCTGAGCAAAACGGTGGGTAATCTATAAGCATTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8572#0 GAATTGAATGGAACAACAATCAACAACCAAAAGCTTTCATCTTAACAGTCCAATTACACT 60 consensus_8572#1 ------------------------------------------------------------ consensus_8572#0 ATACATATTGAAGAACAATATTTCTTACATTTTAAAGAATAATTCAATCCAGAAAAGAGA 120 consensus_8572#1 ------------------------------------------------------------ consensus_8572#0 GAAGAAATACAAACATTCGTGTAAACAGAGGAAAAAAGGTAAGCAGAAAAAGAGAGGAGA 180 consensus_8572#1 ------------------------------------------------------------ consensus_8572#0 CAAAAGAAACAAATAAAAATGAGCCATAAAGATTGGACAACGAAAATGTTATGAAACACA 240 consensus_8572#1 ------------------------------------------------------------ consensus_8572#0 ATACAACAGAATGATGATTATATAATAAGGAGTTCATAGAAAGACAAAAGGTATCTTTTT 300 consensus_8572#1 ------------------------------------------------------------ consensus_8572#0 TAAAGTGGTATACAGAATAACCAAACCCTTTTAAAACGACATTGATAATTTTAATTATAC 360 consensus_8572#1 ------------------------------------------------------------ consensus_8572#0 GAAAAGATCTTTCACAAAAATAACCAAAAGAAAAGAAACAAAACTGTGAGAAATATGAGT 420 consensus_8572#1 ------------------------------------------------------------ consensus_8572#0 GATTAGGTACAAAGATGTAAAGATACGAAACACTAGTTATATGCATATATATACGTGACG 480 consensus_8572#1 ------------------------------------------------------------ consensus_8572#0 AGGGGAACGGAGGTGGAAATAGGTGATACAATATGTAATCAATGAAGAATTAACTCATTA 540 consensus_8572#1 ------------------------------------------------------------ consensus_8572#0 TGTTGAAGAGTTATTCTTTATTCCAGTTAAATCGGACACCATACTACTTCTAGATGATAA 600 consensus_8572#1 ------------------------------------------------------------ consensus_8572#0 GGCAGTTTGATGACGTTGAGATTTTTGTTGTTGATATAATTGACGATCTAATATTCGATC 660 consensus_8572#1 ------------------------------------------------------------ consensus_8572#0 ATTATTTGTCCAACCATCAAATGCTTTATAAGTATAATTTATAAAAGCTAAGTTTTTCTG 720 consensus_8572#1 ------------------------------------------------------------ consensus_8572#0 ATAACTTTTCATAGGATCTGTAACATTAGGCCAACTTAAATCAGCATTGGGGAATTCGTC 780 consensus_8572#1 ------------------------------------------------------------ consensus_8572#0 GAAGTTACTAGTATCATCAATTGAACGTATATTCACTGGAATCGCTGCAGG-TCGTTCAC 839 consensus_8572#1 ----------------------------------ATTGTGATGGATGGGGGGTCGTTCAC 26 * ** ** * ** ** ******** consensus_8572#0 GTATATGCTCCCAGTCAACTGCATGGAAAAATGGTTGTTTTCGTATATCTTCAATACTCG 899 consensus_8572#1 GTATATGCTCCCAGTCAACTGCATGGAAAAATGGTTGTTTTCGTATATCTTCAATACTCG 86 ************************************************************ consensus_8572#0 ATAAACGTGTTTCTGCTCCACAACATAAAGATTGTATTAAGTTTCTTGAATGATTACTAA 959 consensus_8572#1 ATAAACGTGTTTCTGCTCCACAACATAAGGATTGTATTAAGTTTCTTGAATGATTACTAA 146 **************************** ******************************* consensus_8572#0 TAGGCATTTCAGGTGGAAAAAATAATGCCTCTTTCCAATTCATAATTTTTTTATACGTTT 1019 consensus_8572#1 TAGGCATTTCAGGTGGAAAAAATAATGCCTCTGTCCAATTCATAATTTTTCTATACGTTT 206 ******************************** ***************** ********* consensus_8572#0 CTTGTGGTGTAGCTGAGCAAAACGGTGGGTAACCTATAAGCATTTCATACATAATAACAC 1079 consensus_8572#1 CTTGTGGTGTCGCTGAGCAAAACGGTGGGTAATCTATAAGCATTTC-------------- 252 ********** ********************* ************* consensus_8572#0 CAAGTGACCACAAATCACAAGAATTTGTATAACCATGATGTTGAAATACTT 1130 consensus_8572#1 --------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||