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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8573#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 811 fasta sequence
[GTGTTGTGACGGTCTGTTGTTTCTTGAGCTCGTTTTCTCGTACAGTTCTATCAGGCTTCTTATTCGAAACGTCGGATATATTATCTATTTGATTAGGTTCAGCCAGCTGTTTTGGAGATCCTGGTGAAACGTCTTCACTAGGTTCGCATTTATGTGGAACAACTGACGGGTCGGTACCCACTTTTGACAACTCGTCTGTGATCATGCCAGATTTCGATGCTGTAATCGTTGCTGCGACCGCTTTGGCATTAGCTAAGGCGCTTGCTAAAAGCGAGTTTGGGGCGAAAACAGTAGTAATATCTTCAGGCTCAGCTTTACTGTCTACTGACTTCATATTCCCATTAGGTTTGTTTTGATTCTTAGATTTGGACAAATGATTTTGGGGTGAGTTATAACCGAAACTGTGGTCGGACCGAGTACTTGGGGGTGTTGTGACGGTCTGTTGTTTCTTGAGCTCGTTTTCTCGTTCCTTTGCTTCTGCCTGAGATTTCCTGAGTTGAGCTAGAACTGACTCAAGTTTCCCACCCCCTACCTTTGGACGAGCATATAGGCGCAGCAAACACAAAGCGATCTCGTGAACAGATTCTTCGCTCACGCTAAACATTTCCCACCAAGCTGGGTGGCGTGGCAAAGGAATGTTGAGCTTACATGATGCCAGATAAATGCAACCACATGCAATTGCTTCCGGAAGATAACGAACAAATATATCAGTTCGAAGACTGTCGTTCATGTAATTCCAAGCAGTTTGTACAAGGTTTTTGTTGGTTTCATGGTCCAAAGCCTGTAAGTAGCAAATAACAAGCTTATGAGG]
[+] EMBL CD200665 [GTGTTGTGACGGTCTGTTGTTTCTTGAGCTCGTTTTCTCGTACAGTTCTATCAGGCTTCTTATTCGAAACGTCGGATATATTATCTATTTGATTAGGTTCAGCCAGCTGTTTTGGAGATCCTGGTGAAACGTCTTCACTAGGTTCGCATTTATGTGGAACAACTGACGGGTCGGTACCCACTTTTGACAACTCGTCTGTGATCATGCCAGATTTCGATGCTGTAATCGTTGCTGCGACCGCTTTGGCATTAGCTAAGGCGCTTGCTAAAAGCGAGTTTGGGGCGAAAACAGTAGTAATATCTTCAGGCTCAGCTTTACTGTCTACTGACTTCATATTCCCATTAGGTTTGTTTTGATTCTTAGATTTGGACAAATGATTTTGGGGTGAGTTATAACCGAAACTGTGGTCGGACCGAGTACTTGGGGGTGTTGTGACGGTCTGTTGTTTCTTGAGCTCGTTTTCTCGTTCCTTTGCTTCTGCCTGAGATTTCCTGAGTTGAGCTAGAACTGACTCAAGTTTCCCACCCC ]
[+] EMBL CD161631 [ TAGGTTTGTTTTGATTCTTAGATTTGGACAAATGATTTTGGGGTGAGTTATAACCGAAACTGTGGTCGGACCGAGTACTTGGGGGTGTTGTGACGGTCTGTTGTTTCTTGAGCTCGTTTTCTCGTTCCTTTGCTTCTGCCTGAGATTTCCTGAGTTGAGCTAGAACTGACTCAAGTTTCCCAACATCTACCTTTGGACGAGCATATAGGCGCAGCAAACACAAAGCGATCTCGTGAACAGATTCTTCGCTCACGCTAAACATTTCCCACCAAGCTGGGTGGCGTGGCAAAGGAATGTTGAGCTTACATGATGCCAGATAAATGCAACCACATGCAATTGCTTCCGGAAGATAACGAACAAATATATCAGTTCGAAGACTGTCGTTCATGTAATTCCAAGCAGTTTGTACAAGGTTTTTGTTGGTTTCATGGTCCAAAGCCTGTAAGTAGCAAATAACAAGCTTATGAGG]
consensusID : consensus_8573#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 657 fasta sequence
[ATGATGTCGACGTCTTTTATCGGATTCTGTGTTATTAGATGGAATATTTGAGTAGGCAGCTGGTCGGATAATTGGTCGTCTTTTGCTCTCAGAGTTTTCTTGTACAGTTCTATCAGGCTTCTTATTCGAAACGTCGGATATATTATCTATTTGATTAGGTTCAGCCAGCTGTTTTGGAGATCCTGGTGAAACGTCTTCACTAGGTTCGCATTTATGTGGAACAACTGACGGGTCGGTACCCACTTTTGACAACTCGTCTGTGATCATGCCAGATTTCGATGCTGTAATCGTTGCTGCGACCGCTTTGGCATTAGCTAAGGCGCTTGCTAAAAGCGAGTTTGGGGCGAAAACAGTAGTAATATCTTCAGGCTCAGCTTTACTGTCTACTGACTTCATATTCCCAATAAGTTTGGTTGAATTTTAAATTTGGACCAATGATTTTTGGGGTGAGTTATAACCGAAACTGTGGTCGGACCGAGTACTTGGGGGTGTTGTGACGGTCTGTTGTTTCTTGAGCTCGTTTTCTCGTTCCTTTGCTTCTGCCTGAGATTTCCTGAGTTGAGCTAGAACTGACTCAAGTTTCCCAACATCTACCTTTGGACGAGCATATAGGCGCAGCAAAGGGAATTTGGTCCCAAATCGAATTACCCAAGAGCC]
[-] EMBL CD152271 [ATGATGTCGACGTCTTTTATCGGATTCTGTGTTATTAGATGGAATATTTGAGTAGGCAGCTGGTCGGATAATTGGTCGTCTTTTGCTCTCAGAGTTTTCTTGTACAGTTCTATCAGGCTTCTTATTCGAAACGTCGGATATATTATCTATTTGATTAGGTTCAGCCAGCTGTTTTGGAGATCCTGGTGAAACGTCTTCACTAGGTTCGCATTTATGTGGAACAACTGACGGGTCGGTACCCACTTTTGACAACTCGTCTGTGATCATGCCAGATTTCGATGCTGTAATCGTTGCTGCGACCGCTTTGGCATTAGCTAAGGCGCTTGCTAAAAGCGAGTTTGGGGCGAAAACAGTAGTAATATCTTCAGGCTCAGCTTTACTGTCTACT ]
[+] EMBL CD132243 [ ATGGAATATTTGAGTAGGCAGCTGGTCGAATAATTGGTCGTCTTTTGCTCTCAGAGTTTTCTTGTACAGTTCTATCAGGCTTCTTATTCGAAACGTCGGATATATTATCTATTTGATTAGGTTCAGCCAGCTGTTTTGGAGATCCTGGTGAAACATCTTCACTAGGTTCGCATTTATGTGGAACAACTGACGGGTCGGTACCCACTTTTGACAACTCGTCTGTGATCATGCCAGATTTCGATGCTGTAATCGTTGCTGCGACCGCTTTGGCATTAGCTAAGGCGCTTGCTAAAAGCGAGTTTGGGGCGAAAACAGTAGTAATATCTTCAGGCTCAGCTTTACTGTC ]
[-] EMBL CD123638 [ GCCAGCTGTTTTGGAGATCCTGGTGAAACGTCTTCACTAGGTTCGCATTTATGTGGAACAACTGACGGGTCGGTACCCACTTTTGACAACTCGTCTGTGATCATGCCAGATTTCGATGCTGTAATCGTTGCTGCGACCGCTTTGGCATTAGATAAGGCGCTTGCTAAAAGCGAGTTTGGGGCGAAAACAGTAGTAATATCTTCAGGCTCAGCTTTACTGTCTACTGACTTCATATTCCCAATAAGTTTGGTTGAATTTTAAATTTGGACCAATGATTTTTGGGGTGAGTTATAACCGAAACTGTGGTCGGACCGAGTACTTGGGGGTGTTGTGACGGTCTGTTGTTTCTTGAGCTCGTTTTCTCGTTCCTTTGCTTCTGCCTGAGATTTCCTGAGTTGAGCTAGAACTGACTCAAGTTTCCCAACATCTACCTTTGGACGAGCAT ]
[-] EMBL CD123584 [ TGCCAGATTTCGATGCTGTAATGGTTGCTGCGACCGCTTTGGCATTAGCTAAGGCGCTTGCTAAAAGCGAGTTTGGGGCGAAAACAGTAGTAATATCTTCAGGCTCAGCTTTACTGTCTACTGACTTCATATTCCCAGTAGGTTTGTTTGATTCTTAGATTTGGACAAATGA TTTTGGGGTGAGTTATAACCGAAACTGTGGTCGGACCGAGTACTTGGGGGTGTTGTGACGGTCTGTTGTTTCTTGAGCTCGTTTTCTCGTTCCTTTGCTTCTGCCTGAGATTTCCTGAGTTGAGCTAGAACTGACTCAAGTTTCCCAACATCTACCTTTGGACGAGCATATAGGCGCAGCAAAGGGAATTTGGTCCCAAATCGAATTACCCAAGAGCC]
consensusID : consensus_8573#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence
[GCCATTTGGTTTGTGAGGTGTATACATAGGGTAAATTTGCCTTATTGCTCTCATTCTCTCTCTTCTTAGCAAATACAATTCATCTTTGTTTTTTTTATTTTCCTCGTCTTACCCCCACCACCATTTTCCTTTATCGATTAGACATATGTCTCACCACCCTACAATTTTATGTCGTACCCCGCCATTGCCGTCACCACTATCTTGTATACGTTATAAGTCCCATCCGACTCAGCATGCCTTTATTCTATATATCACATCAGTACTAGCAGCGATAACAACAAAAACAACACAATTCTAATTGCGCCTTCACCTCACCCTCTCTCTCTCCACTCTTATGTCGACGTCTTTTATCTGATTCTGTGTTATTAGATGGAATATTTGAGTAGGCAGCTGGTCGGATAATTGGTCGTCTTTTGCTCTCAGAGTTTTCTTGTACAGTTCTACATAATTCAATAAACAATTTAACATTATTCAACAATGAAACAGTAAAAAAAAGAATTTC]
[+] EMBL CD148459 [GCCATTTGGTTTGTGAGGTGTATACATAGGGTAAATTTGCCTTATTGCTCTCATTCTCTCTCTTCTTAGCAAATACAATTCATCTTTGTTTTTTTTATTTTCCTCGTCTTACCCCCACCACCATTTTCCTTTATCGATTAGACATATGTCTCACCACCCTACAATTTTATGTCGTACCCCGCCATTGCCGTCACCACTATCTTGTATACGTTATAAGTCCCATCCGACTCAGCATGCCTTTATTCTATATATCACATCAGTACTAGCAGCGATAACAACAAAAACAACACAATTCTAATTGCGCCTTCACCTCACCCTCTCTCTCTCCACTCTTATGTCGACGTCTTTTATCTGATTCTGTGTTATTAGATGGAATATTTGAGTAGGCAGCTGGTCGGATAATTGGTCGTCTTTTGCTCTCAGAGTTTTCTTGTACAGTTCTACATAATTCAATAAACAATTTAACATTATTCAACAATGAAACAGTAAAAAAAAGAATTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8573#0 -----------------------------------------------------------G 1
consensus_8573#1 ATGATGTCGACGTCTTTTATCGGATTCTGTGTTATTAGATGGAATATTTGAGTAGGCAGC 60
consensus_8573#2 ------------------------------------------------------------
consensus_8573#0 TGTTGTGACGGTCTGTTGTTTCTTGAGCTC---GTTTTCTCGTACAGTTCTATCAGGCTT 58
consensus_8573#1 TGGTCGGATAATTGGTCGTCTTTTGCTCTCAGAGTTTTCTTGTACAGTTCTATCAGGCTT 120
consensus_8573#2 -----------------GCCATTTGGTTTGTGAGGTGTATACATAGGGTAAATTTGCCTT 43
* *** * * * * * * * ** * ***
consensus_8573#0 CTTATTCGAAACGTCGGATATATTATCTATTTGATTAGGTTCAGCCA-GCTGTTTTGGAG 117
consensus_8573#1 CTTATTCGAAACGTCGGATATATTATCTATTTGATTAGGTTCAGCCA-GCTGTTTTGGAG 179
consensus_8573#2 ATTGCTCTCATTCTCTCTCTTCTTAGCAA----ATACAATTCATCTTTGTTTTTTTTATT 99
** ** * ** * *** * * ** **** * * * ****
consensus_8573#0 ATCCTGGTGAAACGTCT-TCACTAGGTTCGCATTTATGTGGAACAACTGACGGGTCGGTA 176
consensus_8573#1 ATCCTGGTGAAACGTCT-TCACTAGGTTCGCATTTATGTGGAACAACTGACGGGTCGGTA 238
consensus_8573#2 TTCCTCGTCTTACCCCCACCACCATTTTCCTTTATCGATTAGACATATGTCTCACCACCC 159
**** ** ** * *** * *** * * * *** ** * *
consensus_8573#0 CCCACTTTTGACAACTCGTCTGTGATCATGCCAGATTTCGATGCTGTAATCGTT----GC 232
consensus_8573#1 CCCACTTTTGACAACTCGTCTGTGATCATGCCAGATTTCGATGCTGTAATCGTT----GC 294
consensus_8573#2 TACAATTTTATGTCGTACCCCGCCATTGC-CGTCACCACTATCTTGTATACGTTATAAGT 218
** **** * * * ** * * * ** **** **** *
consensus_8573#0 TGCGACCGCTTTGGCATTAGCTAAGGCGCT-TGCTAAAAGCGAGTTTGGGGCGAAAACAG 291
consensus_8573#1 TGCGACCGCTTTGGCATTAGCTAAGGCGCT-TGCTAAAAGCGAGTTTGGGGCGAAAACAG 353
consensus_8573#2 CCCATCCGACTCAGCATGCCTTTATTCTATATATCACATCAGTACTAGCAGCGATAACAA 278
* *** * **** * * * * * * * * * * **** ****
consensus_8573#0 TAGTAATATCTTCAGGCTCAGCTTTACTGTCTACTGACTTCATATTCCCATTAGGTTTGT 351
consensus_8573#1 TAGTAATATCTTCAGGCTCAGCTTTACTGTCTACTGACTTCATATTCCCAATAAGTTTGG 413
consensus_8573#2 CAAAAACAACA-CAATTCTAATTGCGCCTTCACCTCACCCTCTCTCTCTCCACTCTTATG 337
* ** * * ** * * * ** ** ** * * * **
consensus_8573#0 TTTGATTCTTAGATTTGGACAAATGATTTT-GGGGTGAGTTATAACCGAAACTGTGGTCG 410
consensus_8573#1 TT-GAATTTTAAATTTGGACCAATGATTTTTGGGGTGAGTTATAACCGAAACTGTGGTCG 472
consensus_8573#2 TCGACGTCTTTTATCTGATTCTGTGTTATT--AGATGGA--ATATTTGAGTAGGCAGCTG 393
* * ** ** ** ** * ** * ** *** ** * * *
consensus_8573#0 GACCGAGTACTTGGGGGTGTTGTGACGGTCTGTTGTTTCTTGAGCTCGTTTTCTCGTTCC 470
consensus_8573#1 GACCGAGTACTTGGGGGTGTTGTGACGGTCTGTTGTTTCTTGAGCTCGTTTTCTCGTTCC 532
consensus_8573#2 G-TCGGATAATTGGTCGTCTTTTG-CTCTCAGAGTTTTCTTGTACAGTTCTACATAATTC 451
* ** ** **** ** ** ** * ** * ******* * * * * * *
consensus_8573#0 TTTGCTTCTGCCTGAGATTTCCTGA-GTTGAGCTAGAACTGACTCAAGTTTCCCACCCCC 529
consensus_8573#1 TTTGCTTCTGCCTGAGATTTCCTGA-GTTGAGCTAGAACTGACTCAAGTTTCCCAACATC 591
consensus_8573#2 AATAAA-CAATTTAACATTATTCAACAATGAAACAGTAAAAAAAAGAATTTC-------- 502
* * * * *** * *** ** * * * ****
consensus_8573#0 TACCTTTGGACGAGCATATAGGCGCAGCAAACACAAAGCGATCTCGTGAACAGATTCTTC 589
consensus_8573#1 TACCTTTGGACGAGCATATAGGCGCAGCAAAGGGAATTTGGTCCCA-AATCGAATTACCC 650
consensus_8573#2 ------------------------------------------------------------
consensus_8573#0 GCTCACGCTAAACATTTCCCACCAAGCTGGGTGGCGTGGCAAAGGAATGTTGAGCTTACA 649
consensus_8573#1 AAGAGCC----------------------------------------------------- 657
consensus_8573#2 ------------------------------------------------------------
consensus_8573#0 TGATGCCAGATAAATGCAACCACATGCAATTGCTTCCGGAAGATAACGAACAAATATATC 709
consensus_8573#1 ------------------------------------------------------------
consensus_8573#2 ------------------------------------------------------------
consensus_8573#0 AGTTCGAAGACTGTCGTTCATGTAATTCCAAGCAGTTTGTACAAGGTTTTTGTTGGTTTC 769
consensus_8573#1 ------------------------------------------------------------
consensus_8573#2 ------------------------------------------------------------
consensus_8573#0 ATGGTCCAAAGCCTGTAAGTAGCAAATAACAAGCTTATGAGG 811
consensus_8573#1 ------------------------------------------
consensus_8573#2 ------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||