cluster # 8576

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Schistosoma mansoni
cluster # 8576 cluster # 8576 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8576#0 length = 1031 sequences # 5

consensus_8576#1 length = 161 sequences # 2

consensusID : consensus_8576#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1031
fasta sequence

                              [AAGTGGCACGAGCGACCCAAGTGGCACGAGCGCCCCAAGTGGCACGAGCGCCCCAAGTACCCCTGAATTTAAGCCAGCTGAAAGTACTCCGGAGGAAGCAGAGTTAACAACAGCATCATAATGCGAGGTATAGCCCTTAACCA-CAGCGCCTAGTGACTTGGGGTTTGGACTATTCGAATTCCCGCGTCCGCCATGTTGCCAGTCACATCTCTACGACGATACTATCTCGCACTATGACGAGCTGGATCATAATGATTTGCGAAGGCTCTACACGAATTGAATGGCATCCCACGACCTCGACCAAACATTCCTCTTCCTCTGCCTCTCCCACGTCCTCTAGGCTCAAAGCTTGACCCTCTGGGAGCATTCAAATCACTCACTGAATCTTGAGGTGCTTCTGTCGGAGCTATTCGTGGCCCCTGCCCTCTACCTACACGCATTCCTCGAGGTGTTCCCCTACCTGAGCCACGACCACGCACAAAGGTACTAATTGGCTCATCTGTCCCTTTAGCGGATGTAATTTGCACGTCTTCAGGTGGCACTGGTGGCGGCTCTGTGGAGTTGGGGGTTTTCGACACCCGAGAACCAGCTAAAATAATTAATATTGCACCTTTGCTTACCTTTCGGAGTTGCAGTATCAAGCTTCACCTCACTCTTAGTTATCGTGTCGGCCTTTGTAGGTGCCACATGTTGCTGTTGCAAATGAGGCTTATCCTTTTTAG-TTTTTTCACCTCGTTTACTCTGCAACTTGGATAGCAGGATATCTGGGTCTTCACTATTCAGAGTGTCGTCCAGGAACAGTGAGAACCTGCTCTTCACTTCCACGGAGTACTGATAGGCGTGGTCAACACCAGCCATGACTACAGAACACACTGTGGACAAGCAGTCAACATGATCACCGCAGAGGAACGGAAATGGTGTGTACTAACTCAGCAAAACACAGCACTCACTGGTTAAAAACAATTGAATGGTAAGAGACCGTTTGGTACTGTTTGCTGTCCATTTTTGTGATCCTCATTAACCAAGAAGTG]

[-] EMBL CD198509             [AAGTGGCACGAGCGACCCAAGTGGCACGAGCGCCCCAAGTGGCACGAGCGCCCCAAGTACCCCTGAATTTAAGCCAGCTGAAAGTACTCCGGAGGAAGCAGAGTTAACAACAGCATCATAATGCGAGGTATAGCCCTTAACCA CAGCGCCTAGTGACTTGGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD198291             [                                                                   TTTAAGCCAGCTGACAGTACTCCGGAGCAAGCAGAGTTCACAACAGCATCATAATGCGAGGTACAGCCCTTAACCATCAGCGCCTAGTGAGCACTCGTTTGGACTATTCGAATTCCCGCGTCCGCCATGTTGCCAGTCACATCTCTACGACGATACTATCTCGCACTATGACGAGCTGGATCATAATGATTTGCGAAGGCTCTACACGAATTGAATGGCATCCCACGACCTCGACCAAACATTCCTCTTCCTCTGCCTCTCCCACGTCCTCTAGGCTCAAAGCTTGACCCTCTGGGAGCATTCAAATCACTCACTGAATCTTGAGGTGCTTCTGTCGGAGCTATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD171148             [                                                                                                                                                                                                                                                                                                                                      TCCCACGTCCTCTAGGCTCAAAGCTTGACCCTCTGGGAGCATTCAAATCACTCACTGAATCTTGAGGTGCTTCCGTCGGAGCTATTCGTGGCCCCTGCCCTCTACCTACACGCATTCCTCGAGGTGTTCCCCTACCTGAGCCACGACCACGCACAAAGGTACTAATTGGCTCATCTGTCCCCTTAGCGGATGTAATTTGCACGTCTTCAGGTGGCACTGGTGGCGGCTCTGTGGAGTTGGGGGTTTTCGACACCCGAGAACCAGCTAAAATAATTAATATTGCACCTTTGCTTACCTTTCGGAGTTGCAGTATCAAGCTTCACCTCACTCTTAGTTATCGTGTCGGCCTTTGT                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD188407             [                                                                                                                                                                                                                                                                                                                                                                                                                                                              GAGGTGTTCCCCTACCTGAGCCACGACCACGCACAAAGGTACTAATTGGCTCATCTGTCCCTTTAGCGGATGTAATTTGCACGTCTTCAGGTGGCACTGGTGGCGGCTCTGTGGAGTTGGGGGTTTTCGACACCCGAGAACCAGCTAAAATAATTAATATTGCACCTTTGCTTACCTTTCGGAGTTGCAGTATCAAGCTTCACCTCACTCTTAGTTATCGTGTCGGCCTTTGTAGGTGCCACATGTTGCTGTTGCAAATGAGGCTTATCCTTTTTAG TTTTTTCACCTCGTTTACTCTGCAACTTGGATAGCAGGATATCTGGGTCTTCACTATTCAGAGTGTCGTCCAGGAACAGTGAGAACCTGCTCTTCACTTCCACGGAGTACTGATAGGCGTGGTCAACACCAGCCATGACTACAGAACACACTGTGGACAAGCA                                                                                                                                                  ]
[+] EMBL CD084969             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CTGAGCCACGACCACGCACAAAGGTACTAATTGGCACATCTGTCCCTTTAGCGGATGTAATTTGCACGTCTTCAGGTGGCACTGGTGGCGGCTCTGTGGAGTTGGGGGTTTTCGACACCCGAGAACCAGCTAAAATAATTAATATTGCACCTTTGCTTACCTTTCGGAGTTGCAGTATCAAGCTTCACCTCACTCTTAGTTATCGTGTCGGCCTTTGTAGGTGCCACATGTTGCTGTTGCAAATGAGGCTTATCCTTTTTAGTTTTTTTCACCTCGTTTACTCTGCAACTTGGATAGCAGGATATCTGGGTCTTCACTATTCAGAGTGTCGTCCAGGAACAGTGAGAACCTGCTCTTCACTTCCACGGAGTACTGATAGGCGTGGTCAACACCAGCCATGACTACAGAACACACTGTGGACAAGCGGTCAACATGATCACCGCAGAGGAACGGAAATGGTGTGTACTAACTCAGCAAAACACAGCACTCACTGGTTAAAAACAATTGAATGGTAAGAGACCGTTTGGTACTGTTTGCTGTCCATTTTTGTGATCCTCATTAACCAAGAAGTG]




>consensus_8576#0
AAGTGGCACGAGCGACCCAAGTGGCACGAGCGCCCCAAGTGGCACGAGCGCCCCAAGTAC
CCCTGAATTTAAGCCAGCTGAAAGTACTCCGGAGGAAGCAGAGTTAACAACAGCATCATA
ATGCGAGGTATAGCCCTTAACCACAGCGCCTAGTGACTTGGGGTTTGGACTATTCGAATT
CCCGCGTCCGCCATGTTGCCAGTCACATCTCTACGACGATACTATCTCGCACTATGACGA
GCTGGATCATAATGATTTGCGAAGGCTCTACACGAATTGAATGGCATCCCACGACCTCGA
CCAAACATTCCTCTTCCTCTGCCTCTCCCACGTCCTCTAGGCTCAAAGCTTGACCCTCTG
GGAGCATTCAAATCACTCACTGAATCTTGAGGTGCTTCTGTCGGAGCTATTCGTGGCCCC
TGCCCTCTACCTACACGCATTCCTCGAGGTGTTCCCCTACCTGAGCCACGACCACGCACA
AAGGTACTAATTGGCTCATCTGTCCCTTTAGCGGATGTAATTTGCACGTCTTCAGGTGGC
ACTGGTGGCGGCTCTGTGGAGTTGGGGGTTTTCGACACCCGAGAACCAGCTAAAATAATT
AATATTGCACCTTTGCTTACCTTTCGGAGTTGCAGTATCAAGCTTCACCTCACTCTTAGT
TATCGTGTCGGCCTTTGTAGGTGCCACATGTTGCTGTTGCAAATGAGGCTTATCCTTTTT
AGTTTTTTCACCTCGTTTACTCTGCAACTTGGATAGCAGGATATCTGGGTCTTCACTATT
CAGAGTGTCGTCCAGGAACAGTGAGAACCTGCTCTTCACTTCCACGGAGTACTGATAGGC
GTGGTCAACACCAGCCATGACTACAGAACACACTGTGGACAAGCAGTCAACATGATCACC
GCAGAGGAACGGAAATGGTGTGTACTAACTCAGCAAAACACAGCACTCACTGGTTAAAAA
CAATTGAATGGTAAGAGACCGTTTGGTACTGTTTGCTGTCCATTTTTGTGATCCTCATTA
ACCAAGAAGTG

consensusID : consensus_8576#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 161
fasta sequence

                              [GCGACTCCTGGACTCAGTCGGCTCATCTGTCCCTTTAGCGGATGTAATTTGCACGTCTTCAGGTGGCACTGGTGGCGGCTCTGTGGAGTTGGGGGTTTTCGACACCCGAGAACCAGCTAAAATAATTAATATTGCACCTTTGCTTACCTTTCGGAGTCGCC]

[-] EMBL CD141612             [GCGACTCCTGGACTCAGTCGGCTCATCTGTCCCTTTAGCGGATGTAATTTGCACGTCTTCAGGTGGCACTGGTGGCGGCTCTGTGGAGTTGGGGGTTTTCGACACCCGAGAACCAGCTAAAATAATTAATATTGCACCTTTGCTTACCTTTCGGAGTCGCC]
[-] EMBL CD141894             [                  CGGCTCATCTGTCCCTTTAGCGGATGTAATTTGCACGTCTTCAGGTGGCACTGGTGGCGGCTCTGTGGAGTTGGGGGTTTTCGACACCCGAGAACCAGCTAAAATAATTAATATTGCACCTTTGC                  ]




>consensus_8576#1
GCGACTCCTGGACTCAGTCGGCTCATCTGTCCCTTTAGCGGATGTAATTTGCACGTCTTC
AGGTGGCACTGGTGGCGGCTCTGTGGAGTTGGGGGTTTTCGACACCCGAGAACCAGCTAA
AATAATTAATATTGCACCTTTGCTTACCTTTCGGAGTCGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8576#0      AAGTGGCACGAGCGACCCAAGTGGCACGAGCGCCCCAAGTGGCACGAGCGCCCCAAGTAC 60
consensus_8576#1      ------------------------------------------------------------
                                                                                  

consensus_8576#0      CCCTGAATTTAAGCCAGCTGAAAGTACTCCGGAGGAAGCAGAGTTAACAACAGCATCATA 120
consensus_8576#1      ------------------------------------------------------------
                                                                                  

consensus_8576#0      ATGCGAGGTATAGCCCTTAACCACAGCGCCTAGTGACTTGGGGTTTGGACTATTCGAATT 180
consensus_8576#1      ------------------------------------------------------------
                                                                                  

consensus_8576#0      CCCGCGTCCGCCATGTTGCCAGTCACATCTCTACGACGATACTATCTCGCACTATGACGA 240
consensus_8576#1      ------------------------------------------------------------
                                                                                  

consensus_8576#0      GCTGGATCATAATGATTTGCGAAGGCTCTACACGAATTGAATGGCATCCCACGACCTCGA 300
consensus_8576#1      ------------------------------------------------------------
                                                                                  

consensus_8576#0      CCAAACATTCCTCTTCCTCTGCCTCTCCCACGTCCTCTAGGCTCAAAGCTTGACCCTCTG 360
consensus_8576#1      ------------------------------------------------------------
                                                                                  

consensus_8576#0      GGAGCATTCAAATCACTCACTGAATCTTGAGGTGCTTCTGTCGGAGCTATTCGTGGCCCC 420
consensus_8576#1      ------------------------------------------------------------
                                                                                  

consensus_8576#0      TGCCCTCTACCTACACGCATTCCTCGAGGTGTTCCCCTACCTGAGCCACGACCACGCACA 480
consensus_8576#1      -----------------------------------------------------GCGACTC 7
                                                                            **    

consensus_8576#0      AAGGTACTAATTGGCTCATCTGTCCCTTTAGCGGATGTAATTTGCACGTCTTCAGGTGGC 540
consensus_8576#1      CTGGACTCAGTCGGCTCATCTGTCCCTTTAGCGGATGTAATTTGCACGTCTTCAGGTGGC 67
                        **    * * ************************************************

consensus_8576#0      ACTGGTGGCGGCTCTGTGGAGTTGGGGGTTTTCGACACCCGAGAACCAGCTAAAATAATT 600
consensus_8576#1      ACTGGTGGCGGCTCTGTGGAGTTGGGGGTTTTCGACACCCGAGAACCAGCTAAAATAATT 127
                      ************************************************************

consensus_8576#0      AATATTGCACCTTTGCTTACCTTTCGGAGTTGCAGTATCAAGCTTCACCTCACTCTTAGT 660
consensus_8576#1      AATATTGCACCTTTGCTTACCTTTCGGAGTCGCC-------------------------- 161
                      ****************************** **                           

consensus_8576#0      TATCGTGTCGGCCTTTGTAGGTGCCACATGTTGCTGTTGCAAATGAGGCTTATCCTTTTT 720
consensus_8576#1      ------------------------------------------------------------
                                                                                  

consensus_8576#0      AGTTTTTTCACCTCGTTTACTCTGCAACTTGGATAGCAGGATATCTGGGTCTTCACTATT 780
consensus_8576#1      ------------------------------------------------------------
                                                                                  

consensus_8576#0      CAGAGTGTCGTCCAGGAACAGTGAGAACCTGCTCTTCACTTCCACGGAGTACTGATAGGC 840
consensus_8576#1      ------------------------------------------------------------
                                                                                  

consensus_8576#0      GTGGTCAACACCAGCCATGACTACAGAACACACTGTGGACAAGCAGTCAACATGATCACC 900
consensus_8576#1      ------------------------------------------------------------
                                                                                  

consensus_8576#0      GCAGAGGAACGGAAATGGTGTGTACTAACTCAGCAAAACACAGCACTCACTGGTTAAAAA 960
consensus_8576#1      ------------------------------------------------------------
                                                                                  

consensus_8576#0      CAATTGAATGGTAAGAGACCGTTTGGTACTGTTTGCTGTCCATTTTTGTGATCCTCATTA 1020
consensus_8576#1      ------------------------------------------------------------
                                                                                  

consensus_8576#0      ACCAAGAAGTG 1031
consensus_8576#1      -----------