These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8584#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 965 fasta sequence [GTGATGAATTAAATGTACGAACCGAAGCGGAAGTGTATAACGCTGTTATCAGATGGGTAAATCATAATAGAAATTCAAGATCATCTACACTGCTTGAAGCTTTATCTGCCGTCAGATGCTATACACTTCCTCCTACATTTATACAAGGGCAAATAAAAAATTGTAGTCTTCTTGCAGGTTTCACTCCTGCAAAATCTCATTTACAAAATATTCTAGATGATCTTATTAAACACCGTCATATCTCAATAAATAAACGGACAGCTGGGTCAATGGAGATTCTTTACTCAGCTGGTGGTTATCTGCGTTATTCACTAAGTGCATTTGAATGTTACAATCCACTTACAGATAAATGGAGACGTCTACCAGATATACCTAGCCCACGTAGTGGCCTGTCTGCTTGTTCTGTACGTGGATGCGTTTATCTTGTAGGAGGTAGAAATAATAATGAACAGGGAAATATAGATGCACCTCACATGGATTGTTATGATCCAAGAAAAAATTGTTGGACTACATGTGCTCCTATGTCAGTGCCTCGTAATAGAGTTGCTGTTGGTGTTGTCGACGATATGAATTATGCCGTTGGTGGTTCAACCAATACAATGCATCATAAAAGCTCTGAAAAATATGATCCAGATATGGATCAATGGATACCGATAGCTTCTATGAATAGTCGACGAATTGGATTAGGTGTTGCCGTACTTAATCGCTTATTATACGCTGTTGGTGGTTTTGATGGTGAAAAACGTTTGAATACAGTTGAACGTTATGATCCGGAAAAGGATCATTGGGAAGAGTTAGCTTGTTTAAATCGAGCTAGATCCGGTGCAAGTGTTGTTGCACTTGGTGAATACATTTATGNCATTGGTGGATATGATTCTTGTAGTCAGTTAAATACAATGGAACGTTATGATCCTAAACGAAATTGTTGGGAATATTGTGCATCTATGCTACATCCAAGATCAGCA] [+] EMBL CD154040 [GTGATGAATTAAATGTACGAACCGAAGCGGAAGTGTATAACGCTGTTATCAGATGGGTAAATCATAATAGAAATTCAAGATCATCTACACTGCTTGAAGCTTTATCTGCCGTCAGATGCTATACACTTCCTCCTACATTTATACAAGGGCAAATAAAAAATTGTAGTCTTCTTGCAGGTTTCACTCCTGCAAAATCTCATTTACAAAATATTCTAGATGATCTTATTAAACACCGTCATATCTCAATAAATAAACGGACAGCTGGGTCAATGGAGATTCTTTACTCAGCTGGTGGTTATCTGCGTTATTCACTAAGTGCATTTGAATGTTACAATCCACTTACAGATAAATGGAGACGTCTACCAGATATACCTAGCCCACGTAGTGGCCTGTCTGCTTGTTCTGTACGTGGATGCGTTTATCTTGTAGGAGGTAGAAATAATAATGAACAGGGAAATATAGATGCACCTCACATGGATTGTTATGATCCAAGAAAAAATTGTTGGACTACATGTGCTCCTATGTCAGTGCCTCGTAATAGAGTTGCTGTTGGTGTTGTCGACGATATGAATTATGCCGTTGGTGGTTCAACCAATACA ] [+] EMBL CD154194 [GTGATGAATTAAATGTACGAACCGAAGCGGAAGTGTATAACGCTGTTATCAGATGGGTAAATCATAATAGAAATTCAAGATCATCTACACTGCTTGAAGCTTTATCTGCCGTCAGATGCTATACACTTCCTCCTACATTTATACAAGGGCAAATAAAAAATTGTAGTCTTCTTGCAGGTTTCACTCCTGCAAAATCTCATTTACAAAATATTCTAGATGATCTTATTAAACACCGTCATATCTCAATAAATAAACGGACAGCTGGGTCAATGGAGATTCTTTACTCAGCTGGTGGTTATCTGCGTTATTCACTAAGTGCATTTGAATGTTACAATCCACTTACAGATAAATGGAGACGTCTACCAGATATACCTAGCCCACGTAGTGGCCTGTCTGCTTGTTCTGTACGTGGATGCGTTTATCTTGTAGGAGGTAGAAATAATAATGAACAGGGAAATATAGATGCACCTCACATGGATTGTTATGATCCAAGAAAAAATTGTTGGACTACATGTGCTCCTATGTCAGTGCCTCGTANTAGANTTGCTGTT ] [-] EMBL CD185785 [GTGATGAATTAAATGTACGAACCGAAGCGGAAGTGTATAACGCTGTTATCAGATGGGTAAATCATAATAGAAATTCAAGATCATCTACACTGCTTGAAGCTTTATCTGCCGTCAGATGCTATACACCTCCTCATACATTTATACAAGGGCAAATAAAAAATTGTAGTCTTCTTGCAGGTTTCACTCCTGCAAAATGTCATTTACAAAATATTGTAGATGATCTTATTAAACACCGTCATATCTCAATAAATAAACGGACAGTTGGGTCAATGGAGATTCTTTACTCAGCTGGTGGTTATCTGCGTTATTCACTAAGTGCATTTGAATGTTACAATCCACTTACAGATAAATGGAGACGTCTACCAGA ] [+] EMBL CD201541 [ GGAAATATAGATGCACCTCACATGGATTGTTATGATCCAAGAAAAAATTGTTGGACTACATGTGCTCCTATGTCAGTGCCTCGTAATAGAGTTGCTGTTGGTGTTGTCGACGATATGATTTATGCCGTTGGTGGTTCAACCAATACAATGCATCATAAAAGCTCTGAAAAATATGATCCAGATATGGATCAATGGATACCGATAGCTTCTATGAATAGTCGACGAATTGGATTAGGTGTTGCCGTACTTAATCGCTTATTATACGCTGTTGGTGGTTTTGATGGTGAAAAACGTTTGAATACAGTTGAACGTTATGATCCGGAAAAGGATCATTGGGAAGAGTTAGCTTGTTTAAATCGAGCTAGATCCGGTGCAAGTGTTGTTGCACTTGGTGAATACATTTATGNCATTGGTGGATATGATTCTTGTAGTCAGTTAAATACAATGGAACG ] [+] EMBL CD097921 [ GATACCGATAGCTTCTATGAATAGTCGACGAATTGGATTAGGTGTTGCCGTACTTAATCGCTTATTATACGCTGTTGGTGGTTTTGATGGTGAAAAACGTTTGAATACAGTTGAACGTTATGATCCGGAAAAGGATCATTGGGAAGAGTTAGCTTGCTTAAATCGAGCTAGATCCGGTGCAGGTGTTGTTGCACTTGGTGAATACATTTATGCAATTGGTGGATATGATTCTTGTAGTCAGTTAAATACAATGGAACGTTATGATCCTAAACGAAATTGTTGGGAATATTGTGCATCTATGCTACATCCAAGATCAGCA] consensusID : consensus_8584#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 541 fasta sequence [TTGTGCATCTATGCTACATCCAAGATCAGCATTAAGTGCTTCAGTATGGGGAAATGAAATATGGGTTTTTGGTGGCTACGATGGAAGTGAATTTCTAGCCAGTGTTGAAGTTTATAATCCAATTAAAGATCAATGGACTGAACGAACGTTTATGGATTGTGGTAAATCTGGGCATGCAGTTGTAGTTAGTCGTGGACCATCATTTTGATTGACAATGTAAACTATTTTGTTTTTACCAAAAAACAAGATATATTTCCTCATTTAAATTGAAATGTATAGAGAAAACAAACGAGCAGGAGATAGAGAGAGAAGATCGTTCAAGCTCTCTGTGATTTCACCCA-TTTTTTGTCTGTTTCTGTTTATTAGCGCCAATATATAACCATCAACCTTTCAATTTTCTCCCTCCTCGTCCTTACTCCTTCTAGTCTCTATTACGCTTACCAAATATTGTAATTACAGCAACAATCGTAGTAATAGTTAAAGTCATTAGAAATCTTACTCTGAAAAATACTAAAACAGTGCTAACCAACTATGTTTTATA] [-] EMBL CD178707 [TTGTGCATCTATGCTACATCCAAGATCAGCATTAAGTGCTTCAGTATGGGGAAATGAAATATGGGTTTTTGGTGGCTACGATGGAAGTGAATTTCTAGCCAGTGTTGAAGTTTATAATCCAATTAAAGATCAATGGACTGAACGAACGTTTATGGATTGTGGTAAATCTGGGCATGCAGTTGTAGTTAGTCGTGGACCATCATTTTGATTGACAATGTAAACTATTTTGTTTTTACCAAAAAACAAGATATATTTCCTCATTTAAATTGAAATGTATAGAGAAAACAAACGAGCAGGAGATAGAGAGAGAAGATCGTTCAAGCTCTCTGTGATTTCACCCA TTTTTTGTCTGTTTCTGTTTATTAGCGCCAATATATAACCATCAACCTTTCAATTTTCTCCCTCCTC ] [+] EMBL CD179120 [ CTGAACGAACGTTTATGGATTGTGGTAAATCTGGGCATGCAGTTGTAGTTAGTCGTGGACCATCATTTTGATTGACAATGTAAACTATTTTGTTTTTACCAAAAAACAAGATATATTTCCTCATTTAAATTGAAATGTATAGAGAAAACAAACGAGCAGGAGATAGAGAGAGAAGATCGTTCAAGCTCTCTGTGATTTCACCCACTTTTTTGTCTGTTTCTGTTTATTAGCGCCAATATATAACCATCAACCTTTCAATTTTCTCCCTCCTCGTCCTTACTCCTTCTAGTCTCTATTACGCTTACCAAATATTGTAATTACAGCAACAATCGTAGTAATAGTTAAAGTCATTAGAAATCTTACTCTGAAAAATACTAAAACAGTGCTAACCAACTATGTTTTATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8584#0 GTGATGAATTAAATGTACGAACCGAAGCGGAAGTGTATAACGCTGTTATCAGATGGGTAA 60 consensus_8584#1 ------------------------------------------------------------ consensus_8584#0 ATCATAATAGAAATTCAAGATCATCTACACTGCTTGAAGCTTTATCTGCCGTCAGATGCT 120 consensus_8584#1 ------------------------------------------------------------ consensus_8584#0 ATACACTTCCTCCTACATTTATACAAGGGCAAATAAAAAATTGTAGTCTTCTTGCAGGTT 180 consensus_8584#1 ------------------------------------------------------------ consensus_8584#0 TCACTCCTGCAAAATCTCATTTACAAAATATTCTAGATGATCTTATTAAACACCGTCATA 240 consensus_8584#1 ------------------------------------------------------------ consensus_8584#0 TCTCAATAAATAAACGGACAGCTGGGTCAATGGAGATTCTTTACTCAGCTGGTGGTTATC 300 consensus_8584#1 ------------------------------------------------------------ consensus_8584#0 TGCGTTATTCACTAAGTGCATTTGAATGTTACAATCCACTTACAGATAAATGGAGACGTC 360 consensus_8584#1 ------------------------------------------------------------ consensus_8584#0 TACCAGATATACCTAGCCCACGTAGTGGCCTGTCTGCTTGTTCTGTACGTGGATGCGTTT 420 consensus_8584#1 ----TTGTGCATCTATGCTACATCCAAG---ATCAGCATTAAGTGCTTCAGTATGGGGAA 53 * * *** * ** * * ** ** * ** * *** * consensus_8584#0 ATCTTGTAGGAGGTAGAAATAATAATGAACAGGGAAATATAGATGCACCTCACATGGATT 480 consensus_8584#1 ATGAAATATGGGTTTTTGGTGGCTACGA---TGGAAGTGAATTTCTAGCCAGTGTTGAAG 110 ** ** * * * * * ** **** * * * * * * ** consensus_8584#0 GTTATGATCCAAGAAAAAATTGTTGGACTACATGTGCTCCTATGTCAGTGCCTCGTAATA 540 consensus_8584#1 TTTATAATCCAATTAAAGATCAATGGACTGAACGAAC------GTTTATGGATTGTGGTA 164 **** ****** *** ** ****** * * * ** ** * ** ** consensus_8584#0 GAGTTGCTGTTGGTGTTGTCGACGAT-ATGAATTATGCCGTTGGTGGTTCAACCAATACA 599 consensus_8584#1 AATCTGGGCATGCAGTTGTAGTTAGTCGTGGACCATCATTTTGATTGA-----CAATGTA 219 * ** ** ***** * * ** * ** *** * * **** * consensus_8584#0 ATGCATCATAAAAGCTCTGAAAAATATGATCCAGATATGGATCAATGGATACCGATAGCT 659 consensus_8584#1 AACTATTTTGTTTTTACCAAAAAACAAGAT----ATATTTCCTCATTTAAATTGA-AATG 274 * ** * * ***** * *** **** ** * * ** * consensus_8584#0 TCTATGAATAGTCGACGAATTGGATTAGGTGTTGCCGTACTTAATCGCTTATTATACGCT 719 consensus_8584#1 TATAGAGAAAACAAACGAGCAGGAG-----ATAGAGAGAGAAGATCGTTCA-----AGCT 324 * ** * * **** *** * * * **** * * *** consensus_8584#0 GTTGGTGGTTTTGATGGTGAAAAACGTTTGAATACAGTTGAACGTTATGATCCGGAAAAG 779 consensus_8584#1 CTCTGTGATTTCACCCAT------TTTTTGTCTGTTTCTGTTTATTA-GCGCCAATATAT 377 * *** *** * **** * ** *** * ** * * consensus_8584#0 GATCATTGGGAAGAGTTAGCTTGTTTAAATCGAGCTAGATCCGGTGCAAGTGT-TGTTGC 838 consensus_8584#1 AACCATC--AACCTTTCAATTTTCTCCCTCCTCGTCCTTACTCCTTCTAGTCTCTATTAC 435 * *** * * * ** * * * * * * *** * * ** * consensus_8584#0 ACTTGGTGAATACATTTATGNCATTGGTGGATATGATTCTTGTAGTCAGTTAAATACAAT 898 consensus_8584#1 GCTTACCAAATATTGTAATTACAGCA------ACAATCGTAGTAAT-AGTTAAAGTCATT 488 *** **** * ** ** * ** * *** * ******* ** * consensus_8584#0 GGAACGTTATGATCCTAAACGAAATTGTTGGGAATATTGTGCATCTATGCTACATCCAAG 958 consensus_8584#1 AGAA--ATCTTACTCTGAAAAATACTAA-AACAGTGCTAACCAACTATGTTTTATA---- 541 *** * * * ** ** * * * * * * ** ***** * ** consensus_8584#0 ATCAGCA 965 consensus_8584#1 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||