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Schistosoma mansoni
cluster # 8584 cluster # 8584       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8584#0 length = 965 sequences # 5  
consensus_8584#1 length = 541 sequences # 2  

consensusID : consensus_8584#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 965
fasta sequence
                              [GTGATGAATTAAATGTACGAACCGAAGCGGAAGTGTATAACGCTGTTATCAGATGGGTAAATCATAATAGAAATTCAAGATCATCTACACTGCTTGAAGCTTTATCTGCCGTCAGATGCTATACACTTCCTCCTACATTTATACAAGGGCAAATAAAAAATTGTAGTCTTCTTGCAGGTTTCACTCCTGCAAAATCTCATTTACAAAATATTCTAGATGATCTTATTAAACACCGTCATATCTCAATAAATAAACGGACAGCTGGGTCAATGGAGATTCTTTACTCAGCTGGTGGTTATCTGCGTTATTCACTAAGTGCATTTGAATGTTACAATCCACTTACAGATAAATGGAGACGTCTACCAGATATACCTAGCCCACGTAGTGGCCTGTCTGCTTGTTCTGTACGTGGATGCGTTTATCTTGTAGGAGGTAGAAATAATAATGAACAGGGAAATATAGATGCACCTCACATGGATTGTTATGATCCAAGAAAAAATTGTTGGACTACATGTGCTCCTATGTCAGTGCCTCGTAATAGAGTTGCTGTTGGTGTTGTCGACGATATGAATTATGCCGTTGGTGGTTCAACCAATACAATGCATCATAAAAGCTCTGAAAAATATGATCCAGATATGGATCAATGGATACCGATAGCTTCTATGAATAGTCGACGAATTGGATTAGGTGTTGCCGTACTTAATCGCTTATTATACGCTGTTGGTGGTTTTGATGGTGAAAAACGTTTGAATACAGTTGAACGTTATGATCCGGAAAAGGATCATTGGGAAGAGTTAGCTTGTTTAAATCGAGCTAGATCCGGTGCAAGTGTTGTTGCACTTGGTGAATACATTTATGNCATTGGTGGATATGATTCTTGTAGTCAGTTAAATACAATGGAACGTTATGATCCTAAACGAAATTGTTGGGAATATTGTGCATCTATGCTACATCCAAGATCAGCA]

[+] EMBL CD154040             [GTGATGAATTAAATGTACGAACCGAAGCGGAAGTGTATAACGCTGTTATCAGATGGGTAAATCATAATAGAAATTCAAGATCATCTACACTGCTTGAAGCTTTATCTGCCGTCAGATGCTATACACTTCCTCCTACATTTATACAAGGGCAAATAAAAAATTGTAGTCTTCTTGCAGGTTTCACTCCTGCAAAATCTCATTTACAAAATATTCTAGATGATCTTATTAAACACCGTCATATCTCAATAAATAAACGGACAGCTGGGTCAATGGAGATTCTTTACTCAGCTGGTGGTTATCTGCGTTATTCACTAAGTGCATTTGAATGTTACAATCCACTTACAGATAAATGGAGACGTCTACCAGATATACCTAGCCCACGTAGTGGCCTGTCTGCTTGTTCTGTACGTGGATGCGTTTATCTTGTAGGAGGTAGAAATAATAATGAACAGGGAAATATAGATGCACCTCACATGGATTGTTATGATCCAAGAAAAAATTGTTGGACTACATGTGCTCCTATGTCAGTGCCTCGTAATAGAGTTGCTGTTGGTGTTGTCGACGATATGAATTATGCCGTTGGTGGTTCAACCAATACA                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD154194             [GTGATGAATTAAATGTACGAACCGAAGCGGAAGTGTATAACGCTGTTATCAGATGGGTAAATCATAATAGAAATTCAAGATCATCTACACTGCTTGAAGCTTTATCTGCCGTCAGATGCTATACACTTCCTCCTACATTTATACAAGGGCAAATAAAAAATTGTAGTCTTCTTGCAGGTTTCACTCCTGCAAAATCTCATTTACAAAATATTCTAGATGATCTTATTAAACACCGTCATATCTCAATAAATAAACGGACAGCTGGGTCAATGGAGATTCTTTACTCAGCTGGTGGTTATCTGCGTTATTCACTAAGTGCATTTGAATGTTACAATCCACTTACAGATAAATGGAGACGTCTACCAGATATACCTAGCCCACGTAGTGGCCTGTCTGCTTGTTCTGTACGTGGATGCGTTTATCTTGTAGGAGGTAGAAATAATAATGAACAGGGAAATATAGATGCACCTCACATGGATTGTTATGATCCAAGAAAAAATTGTTGGACTACATGTGCTCCTATGTCAGTGCCTCGTANTAGANTTGCTGTT                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD185785             [GTGATGAATTAAATGTACGAACCGAAGCGGAAGTGTATAACGCTGTTATCAGATGGGTAAATCATAATAGAAATTCAAGATCATCTACACTGCTTGAAGCTTTATCTGCCGTCAGATGCTATACACCTCCTCATACATTTATACAAGGGCAAATAAAAAATTGTAGTCTTCTTGCAGGTTTCACTCCTGCAAAATGTCATTTACAAAATATTGTAGATGATCTTATTAAACACCGTCATATCTCAATAAATAAACGGACAGTTGGGTCAATGGAGATTCTTTACTCAGCTGGTGGTTATCTGCGTTATTCACTAAGTGCATTTGAATGTTACAATCCACTTACAGATAAATGGAGACGTCTACCAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD201541             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GGAAATATAGATGCACCTCACATGGATTGTTATGATCCAAGAAAAAATTGTTGGACTACATGTGCTCCTATGTCAGTGCCTCGTAATAGAGTTGCTGTTGGTGTTGTCGACGATATGATTTATGCCGTTGGTGGTTCAACCAATACAATGCATCATAAAAGCTCTGAAAAATATGATCCAGATATGGATCAATGGATACCGATAGCTTCTATGAATAGTCGACGAATTGGATTAGGTGTTGCCGTACTTAATCGCTTATTATACGCTGTTGGTGGTTTTGATGGTGAAAAACGTTTGAATACAGTTGAACGTTATGATCCGGAAAAGGATCATTGGGAAGAGTTAGCTTGTTTAAATCGAGCTAGATCCGGTGCAAGTGTTGTTGCACTTGGTGAATACATTTATGNCATTGGTGGATATGATTCTTGTAGTCAGTTAAATACAATGGAACG                                                             ]
[+] EMBL CD097921             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GATACCGATAGCTTCTATGAATAGTCGACGAATTGGATTAGGTGTTGCCGTACTTAATCGCTTATTATACGCTGTTGGTGGTTTTGATGGTGAAAAACGTTTGAATACAGTTGAACGTTATGATCCGGAAAAGGATCATTGGGAAGAGTTAGCTTGCTTAAATCGAGCTAGATCCGGTGCAGGTGTTGTTGCACTTGGTGAATACATTTATGCAATTGGTGGATATGATTCTTGTAGTCAGTTAAATACAATGGAACGTTATGATCCTAAACGAAATTGTTGGGAATATTGTGCATCTATGCTACATCCAAGATCAGCA]


>consensus_8584#0 GTGATGAATTAAATGTACGAACCGAAGCGGAAGTGTATAACGCTGTTATCAGATGGGTAA ATCATAATAGAAATTCAAGATCATCTACACTGCTTGAAGCTTTATCTGCCGTCAGATGCT ATACACTTCCTCCTACATTTATACAAGGGCAAATAAAAAATTGTAGTCTTCTTGCAGGTT TCACTCCTGCAAAATCTCATTTACAAAATATTCTAGATGATCTTATTAAACACCGTCATA TCTCAATAAATAAACGGACAGCTGGGTCAATGGAGATTCTTTACTCAGCTGGTGGTTATC TGCGTTATTCACTAAGTGCATTTGAATGTTACAATCCACTTACAGATAAATGGAGACGTC TACCAGATATACCTAGCCCACGTAGTGGCCTGTCTGCTTGTTCTGTACGTGGATGCGTTT ATCTTGTAGGAGGTAGAAATAATAATGAACAGGGAAATATAGATGCACCTCACATGGATT GTTATGATCCAAGAAAAAATTGTTGGACTACATGTGCTCCTATGTCAGTGCCTCGTAATA GAGTTGCTGTTGGTGTTGTCGACGATATGAATTATGCCGTTGGTGGTTCAACCAATACAA TGCATCATAAAAGCTCTGAAAAATATGATCCAGATATGGATCAATGGATACCGATAGCTT CTATGAATAGTCGACGAATTGGATTAGGTGTTGCCGTACTTAATCGCTTATTATACGCTG TTGGTGGTTTTGATGGTGAAAAACGTTTGAATACAGTTGAACGTTATGATCCGGAAAAGG ATCATTGGGAAGAGTTAGCTTGTTTAAATCGAGCTAGATCCGGTGCAAGTGTTGTTGCAC TTGGTGAATACATTTATGNCATTGGTGGATATGATTCTTGTAGTCAGTTAAATACAATGG AACGTTATGATCCTAAACGAAATTGTTGGGAATATTGTGCATCTATGCTACATCCAAGAT CAGCA



consensusID : consensus_8584#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 541
fasta sequence
                              [TTGTGCATCTATGCTACATCCAAGATCAGCATTAAGTGCTTCAGTATGGGGAAATGAAATATGGGTTTTTGGTGGCTACGATGGAAGTGAATTTCTAGCCAGTGTTGAAGTTTATAATCCAATTAAAGATCAATGGACTGAACGAACGTTTATGGATTGTGGTAAATCTGGGCATGCAGTTGTAGTTAGTCGTGGACCATCATTTTGATTGACAATGTAAACTATTTTGTTTTTACCAAAAAACAAGATATATTTCCTCATTTAAATTGAAATGTATAGAGAAAACAAACGAGCAGGAGATAGAGAGAGAAGATCGTTCAAGCTCTCTGTGATTTCACCCA-TTTTTTGTCTGTTTCTGTTTATTAGCGCCAATATATAACCATCAACCTTTCAATTTTCTCCCTCCTCGTCCTTACTCCTTCTAGTCTCTATTACGCTTACCAAATATTGTAATTACAGCAACAATCGTAGTAATAGTTAAAGTCATTAGAAATCTTACTCTGAAAAATACTAAAACAGTGCTAACCAACTATGTTTTATA]

[-] EMBL CD178707             [TTGTGCATCTATGCTACATCCAAGATCAGCATTAAGTGCTTCAGTATGGGGAAATGAAATATGGGTTTTTGGTGGCTACGATGGAAGTGAATTTCTAGCCAGTGTTGAAGTTTATAATCCAATTAAAGATCAATGGACTGAACGAACGTTTATGGATTGTGGTAAATCTGGGCATGCAGTTGTAGTTAGTCGTGGACCATCATTTTGATTGACAATGTAAACTATTTTGTTTTTACCAAAAAACAAGATATATTTCCTCATTTAAATTGAAATGTATAGAGAAAACAAACGAGCAGGAGATAGAGAGAGAAGATCGTTCAAGCTCTCTGTGATTTCACCCA TTTTTTGTCTGTTTCTGTTTATTAGCGCCAATATATAACCATCAACCTTTCAATTTTCTCCCTCCTC                                                                                                                                     ]
[+] EMBL CD179120             [                                                                                                                                         CTGAACGAACGTTTATGGATTGTGGTAAATCTGGGCATGCAGTTGTAGTTAGTCGTGGACCATCATTTTGATTGACAATGTAAACTATTTTGTTTTTACCAAAAAACAAGATATATTTCCTCATTTAAATTGAAATGTATAGAGAAAACAAACGAGCAGGAGATAGAGAGAGAAGATCGTTCAAGCTCTCTGTGATTTCACCCACTTTTTTGTCTGTTTCTGTTTATTAGCGCCAATATATAACCATCAACCTTTCAATTTTCTCCCTCCTCGTCCTTACTCCTTCTAGTCTCTATTACGCTTACCAAATATTGTAATTACAGCAACAATCGTAGTAATAGTTAAAGTCATTAGAAATCTTACTCTGAAAAATACTAAAACAGTGCTAACCAACTATGTTTTATA]


>consensus_8584#1 TTGTGCATCTATGCTACATCCAAGATCAGCATTAAGTGCTTCAGTATGGGGAAATGAAAT ATGGGTTTTTGGTGGCTACGATGGAAGTGAATTTCTAGCCAGTGTTGAAGTTTATAATCC AATTAAAGATCAATGGACTGAACGAACGTTTATGGATTGTGGTAAATCTGGGCATGCAGT TGTAGTTAGTCGTGGACCATCATTTTGATTGACAATGTAAACTATTTTGTTTTTACCAAA AAACAAGATATATTTCCTCATTTAAATTGAAATGTATAGAGAAAACAAACGAGCAGGAGA TAGAGAGAGAAGATCGTTCAAGCTCTCTGTGATTTCACCCATTTTTTGTCTGTTTCTGTT TATTAGCGCCAATATATAACCATCAACCTTTCAATTTTCTCCCTCCTCGTCCTTACTCCT TCTAGTCTCTATTACGCTTACCAAATATTGTAATTACAGCAACAATCGTAGTAATAGTTA AAGTCATTAGAAATCTTACTCTGAAAAATACTAAAACAGTGCTAACCAACTATGTTTTAT A



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8584#0      GTGATGAATTAAATGTACGAACCGAAGCGGAAGTGTATAACGCTGTTATCAGATGGGTAA 60
consensus_8584#1      ------------------------------------------------------------
                                                                                  

consensus_8584#0      ATCATAATAGAAATTCAAGATCATCTACACTGCTTGAAGCTTTATCTGCCGTCAGATGCT 120
consensus_8584#1      ------------------------------------------------------------
                                                                                  

consensus_8584#0      ATACACTTCCTCCTACATTTATACAAGGGCAAATAAAAAATTGTAGTCTTCTTGCAGGTT 180
consensus_8584#1      ------------------------------------------------------------
                                                                                  

consensus_8584#0      TCACTCCTGCAAAATCTCATTTACAAAATATTCTAGATGATCTTATTAAACACCGTCATA 240
consensus_8584#1      ------------------------------------------------------------
                                                                                  

consensus_8584#0      TCTCAATAAATAAACGGACAGCTGGGTCAATGGAGATTCTTTACTCAGCTGGTGGTTATC 300
consensus_8584#1      ------------------------------------------------------------
                                                                                  

consensus_8584#0      TGCGTTATTCACTAAGTGCATTTGAATGTTACAATCCACTTACAGATAAATGGAGACGTC 360
consensus_8584#1      ------------------------------------------------------------
                                                                                  

consensus_8584#0      TACCAGATATACCTAGCCCACGTAGTGGCCTGTCTGCTTGTTCTGTACGTGGATGCGTTT 420
consensus_8584#1      ----TTGTGCATCTATGCTACATCCAAG---ATCAGCATTAAGTGCTTCAGTATGGGGAA 53
                             *  * ***  * ** *    *    ** ** *    **     * *** *   

consensus_8584#0      ATCTTGTAGGAGGTAGAAATAATAATGAACAGGGAAATATAGATGCACCTCACATGGATT 480
consensus_8584#1      ATGAAATATGGGTTTTTGGTGGCTACGA---TGGAAGTGAATTTCTAGCCAGTGTTGAAG 110
                      **    ** * * *     *    * **    **** *  *  *  * *     * **  

consensus_8584#0      GTTATGATCCAAGAAAAAATTGTTGGACTACATGTGCTCCTATGTCAGTGCCTCGTAATA 540
consensus_8584#1      TTTATAATCCAATTAAAGATCAATGGACTGAACGAAC------GTTTATGGATTGTGGTA 164
                       **** ******  *** **   ******  * *  *      **   **  * **  **

consensus_8584#0      GAGTTGCTGTTGGTGTTGTCGACGAT-ATGAATTATGCCGTTGGTGGTTCAACCAATACA 599
consensus_8584#1      AATCTGGGCATGCAGTTGTAGTTAGTCGTGGACCATCATTTTGATTGA-----CAATGTA 219
                       *  **    **  ***** *    *  ** *  **    *** * *      ****  *

consensus_8584#0      ATGCATCATAAAAGCTCTGAAAAATATGATCCAGATATGGATCAATGGATACCGATAGCT 659
consensus_8584#1      AACTATTTTGTTTTTACCAAAAAACAAGAT----ATATTTCCTCATTTAAATTGA-AATG 274
                      *   **  *       *  ***** * ***    ****      **  * *  ** *   

consensus_8584#0      TCTATGAATAGTCGACGAATTGGATTAGGTGTTGCCGTACTTAATCGCTTATTATACGCT 719
consensus_8584#1      TATAGAGAAAACAAACGAGCAGGAG-----ATAGAGAGAGAAGATCGTTCA-----AGCT 324
                      * **   * *    ****   ***       * *    *    **** * *      ***

consensus_8584#0      GTTGGTGGTTTTGATGGTGAAAAACGTTTGAATACAGTTGAACGTTATGATCCGGAAAAG 779
consensus_8584#1      CTCTGTGATTTCACCCAT------TTTTTGTCTGTTTCTGTTTATTA-GCGCCAATATAT 377
                       *  *** ***      *        ****  *     **    *** *  **   * * 

consensus_8584#0      GATCATTGGGAAGAGTTAGCTTGTTTAAATCGAGCTAGATCCGGTGCAAGTGT-TGTTGC 838
consensus_8584#1      AACCATC--AACCTTTCAATTTTCTCCCTCCTCGTCCTTACTCCTTCTAGTCTCTATTAC 435
                       * ***    *    * *  **  *     *  *      *   * * *** * * ** *

consensus_8584#0      ACTTGGTGAATACATTTATGNCATTGGTGGATATGATTCTTGTAGTCAGTTAAATACAAT 898
consensus_8584#1      GCTTACCAAATATTGTAATTACAGCA------ACAATCGTAGTAAT-AGTTAAAGTCATT 488
                       ***    ****   * **  **         *  **  * *** * *******  ** *

consensus_8584#0      GGAACGTTATGATCCTAAACGAAATTGTTGGGAATATTGTGCATCTATGCTACATCCAAG 958
consensus_8584#1      AGAA--ATCTTACTCTGAAAAATACTAA-AACAGTGCTAACCAACTATGTTTTATA---- 541
                       ***   * * *  ** **  * * *      * *  *   ** ***** *  **     

consensus_8584#0      ATCAGCA 965
consensus_8584#1      -------
                             




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)