cluster # 8594

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Schistosoma mansoni
cluster # 8594 cluster # 8594 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8594#0 length = 843 sequences # 6

consensus_8594#1 length = 776 sequences # 1

consensusID : consensus_8594#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 843
fasta sequence

                              [CGATCAATCTGGAGTTCCTCCTTACCGATAAACTTTCAACGTATTTGTCCAAGGTTGGTGGTCTAGATATATGCTCACCAGAACTCAAAAATTCAATAAACCAAGTACTA-GAAAAAAATTCAGTTGTCCCGTTTTCAGTTGTAAATGACTGCTATCACCTAACGAAGATGCTGTCGGATACTAGCAAGGACAATATTTATCTCCAATTTTGGCGCATTTCTCTGGACACTTCAATAGTCTTTCCAGCGATAAAGCAGACTTTTAGAAATCAAGTTTTTGATGCTCACTGCGAAGAACTAAAAAATAAGTATGATAACAAAGGCTACG-AAAAAATAACAAAAGATATTGGTACACCCATGGTCTTTTCAACAACTTCCAAGGTTCAGAAAACTTGCTTTTCTGAACTCAAATGCGCTAGGAAACAACTCTTTATGGTTCTCAATTTCATTGTTATTGTGATGTCCGCCTTTGCGTTCGGATATTTCCTTCCTGATTTAATGTTCGCCAGTTATTCTATATCACTCTTCTCGCGTATTGTCTGTGGTTTGTTGTGTGCGGCAGTAGTTCTGGTTGCTGACTTCTACTTCCTGCTTAGAAATTTCAGTTCATTGGAGAAAATGTATGGGTGATTCTTAATTTGCAATGTTTTGGGAGTACTGATGTTTCAGACTTATTAATGAATAACTTTGAATAACTCGTACAGGTTTATGCAGCCTTCTTAACTAGTTTTTCGGATACTTATGCGGTCAAATGAGACTTTGCTACACTTTAAATGCATCACCAGAATTTTCACTCTCAGTGCCTTCTATCAAGCTTTTCAGGATAATAAGTAACATGAAACGT]

[+] EMBL AI976703             [CGATCAATCTGGAGTTCCTCCTTACCGATAAACTTTCAACGTATTTGTCCAAGGTTGGTGGTCTAGATATATGCTCACCAGAACTCAAAAATTCAATAAACCAAGTACTA GAAAAAAATTCAGTTGTCCCGTTTTCAGTTGTAAATGACTGCTATCACCTAACGAAGATGCTGTCGGATACTAGCAAGGACAATATTTATCTCCAATTTTGGCGCATTTCTCTGGACACTTCAATAGTCTTTCCAGCGATAAAGCAGACTTTTAGAAATCAAGTTTTTGATGCTCACTGCGAAGAACTAAAAAATAAGTATGATAACAAAGGCTACG AAAAAATAACAAAAGATATTGGTACACCCATGGTCTTTTCAACAACTTCCAAGGTTCAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD079093             [ GATCAATCTGGAGTTCCTCCTTACCGATAAACTTTCAACGTATTTGTCCAAGGTTGGTGGTCTAGATATATGCTCACCAGAACTCAAAAATTCAATAAACCAAGTACTA GAAAAAAATTCAGTTGTCCCGTTTTCAGTTGTAAATGACTGCTATCACCTAACGAAGATGCTGTCGGATACTAGCAAGGACAATATTTATCTCCAATTTTGGCGCATTTCTCTGGACACTTCAATAGTCTTTCCAGCGATAAAGCAGACTTTTAGAAATCAAGTTTTTGATGCTCACTGCGAAGAACTAAAAAATAAGTATGATAACAAAGGCTACG AAAAAATAACAAAAGATATTGGTACACCCATGGTCTTTTCAACAACTTCCAAGGTTCAGAAAACTTGCTTTTCTGAACTCAAATGCGCTAGGAAACAACTCTTTATGGTTCTCAATTTCATTGTTATTGTGATGTCCGCCTTTGCGTTCGGATATTTCCTTCCTGATTTAATGTTCGCCAGTTATTCTATATCACTCTTCTCGCGTATTGTCTGTGGTTTGTTGTGTGCGGCAGTAGTTCTGGTTGCTGACTTCTACTTCCTGCTTAGAAATTTCAGTTCATTGGAG AAATGTATGG                                                                                                                                                                                                                          ]
[+] EMBL CD178348             [                                                             TCTAGATATATGCTCACCAGAACTCAAAAATTCAATAAACCAAGTACTANGAAAAAAATTCAGTTGTCCCGTTTTCAGTTGTAAATGACTGCTATCACCTAACGAAGATGCTGTCGGATACTAGCAAGGACAATATTTATCTCCAATTTTGGCGCATTTCTCTGGACACTTCAATAGTCTTTCCAGCGATAAAGCAGACTTTTAGAAATCAAGTTTTCGATGCTCACTGCGAAGAACTAAAAAATAAATATGATAACAAAGGCTACG AAAAAATAACAAAAGATATTGGTACACCCATGGTCTTTTCAACAACTTCCAAGGTTCAGAAAACTTGCTTTTCTGAACTCAAATGCGCTAGGAAACAACTCTTTATGGTTCTCAATTTCATTGTTATTGTGATGTCCGCCTTTGCGT                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD073546             [                                                                                                                                                                                                                                                                     TTTAGAAATCAAGTTTTTGATGCTCACTGCGAAGAACTAAAAAATAAGTATGATAACAAAGGCTACG AAAAAATAACAAAAGATATTGGTACACCCATGGTCTTTTCAACAACTTCCAAGGTTCAGAAAACTTGCTTTTCTGAACTCAAATGCGCTAGGAAACAACTCTTTATGGTTCTCAATTTCATTGTTATTGTGATGTCCGCCTTTGCGTTCGGATATTTCCTTCCTGATTTAATGTTCGCCAGTTATTCTATATCACTCTTCTCGCGTATTGTCTGTGGTTTGTTGTGTGCGGCAGTAGTTCTGGTTGCTGACTTCTACTTCCTGCTTAGAAATTTCAGTTCATTGGAGAAAATGTATGGGTGATTCTTAATTTGCAATGTTTTGGGAGTACTGATGTTTCAGACTTATTAATGAATAACTTTGAATAACTCGTACAGGTTTATGCAGCCTTCTTAACTAGTTTTTCGGATACTTATGCGGTCAAATGAGACTTTGCTACACTTTAAATGCATCACCAGAATTTTCACTCTCAGTGCCTTCTATCAAGCTTTTCAGGATAATAAGTAACATGAAACGT]
[+] EMBL CD183205             [                                                                                                                                                                                                                                                                                                                                    TACGAAAAAAATAACAAAAGATATTGGTACACCCATGGTCTTTTCAACAACTTCCAAGGTTCAGAAAACTTGCTTTTCTGAACTCAAATGCGCTAGGAAACAACTCTTTATGGTTCTCAATTTCATTGTTATTGTGATGTCCGCCTTTGCGTTCGGATATTTCCTTCCTGATTTAATGTTCGCCAGTTATTCTATATCACTCTTCTCGCGTATTGTCTGTGGTTTGTTGTGTGCGGCAGTAGTTCTGGTTGCTGACTTCTACTTCCTGCTTAGAAATTTCAGTTCATTGGAGAAAATGTATGGGTGATTCTTAATTTGCAATGTTTTGGGAGTACTGATGTTTCAGACTTATTAATGAATAACTNTGAATAACTCGTACAGGTTTATGCAGCCTTCTTAACTAGTTTTTCGGATACTTATGCGGTCAAATGAGACTTTGCTACACTTT                                                                         ]
[+] EMBL AI977213             [                                                                                                                                                                                                                                                                                                                                                                                                                                                     TTCTCAATTTCATTGTTATTGTGATGTCCGCCTTTGCGTTCGGATATTTCCTTCCTGATTTAATGTTCGCCAGTTATTCTATATCACTCTTCTCGCGTATTGTCTGTGGTTTGTTGTGTGCGGCAGTAGTTCTGGTTGCTGACTTCTACTTCCTGCTTAGAAATTTCAGTTCATTGGAGAAAATGTATGGGTGATTCTTAATTTGCAATGTTTTGGGAGTACTGATGTTTCAGACTTATTAATGAATAACTTTGAATAACTCGTACAGGTTTATGCAGCCTTCTTAACTAGTTTTTCGGATACTTATGCGGTCAAATGAGACTTTGCTACACTTTAAATGCATCAC                                                              ]




>consensus_8594#0
CGATCAATCTGGAGTTCCTCCTTACCGATAAACTTTCAACGTATTTGTCCAAGGTTGGTG
GTCTAGATATATGCTCACCAGAACTCAAAAATTCAATAAACCAAGTACTAGAAAAAAATT
CAGTTGTCCCGTTTTCAGTTGTAAATGACTGCTATCACCTAACGAAGATGCTGTCGGATA
CTAGCAAGGACAATATTTATCTCCAATTTTGGCGCATTTCTCTGGACACTTCAATAGTCT
TTCCAGCGATAAAGCAGACTTTTAGAAATCAAGTTTTTGATGCTCACTGCGAAGAACTAA
AAAATAAGTATGATAACAAAGGCTACGAAAAAATAACAAAAGATATTGGTACACCCATGG
TCTTTTCAACAACTTCCAAGGTTCAGAAAACTTGCTTTTCTGAACTCAAATGCGCTAGGA
AACAACTCTTTATGGTTCTCAATTTCATTGTTATTGTGATGTCCGCCTTTGCGTTCGGAT
ATTTCCTTCCTGATTTAATGTTCGCCAGTTATTCTATATCACTCTTCTCGCGTATTGTCT
GTGGTTTGTTGTGTGCGGCAGTAGTTCTGGTTGCTGACTTCTACTTCCTGCTTAGAAATT
TCAGTTCATTGGAGAAAATGTATGGGTGATTCTTAATTTGCAATGTTTTGGGAGTACTGA
TGTTTCAGACTTATTAATGAATAACTTTGAATAACTCGTACAGGTTTATGCAGCCTTCTT
AACTAGTTTTTCGGATACTTATGCGGTCAAATGAGACTTTGCTACACTTTAAATGCATCA
CCAGAATTTTCACTCTCAGTGCCTTCTATCAAGCTTTTCAGGATAATAAGTAACATGAAA
CGT

consensusID : consensus_8594#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 776
fasta sequence

                              [CTCGCGGCCAAAAATTCGGCACGAGGGCTCAAAAATTCAATAAACCAAGTACTAGAAAAAAATTCAGTTGTCCCGTTTTCAGTTGTAAATGACTGCTATCACCTAACGAAGATGCTGTCGGATACTAGCAAGGACAATATTTATCTCCAATTTTGGCGCATTTCTCTGGACACTTCAATAGTCTTTCCAGCGATAAAGCAGACTTTTAGAAATCAAGTTTTTGATGCTCACTGCGAAGAACTAAAAAATAAATATGATAACAAAGGCTACGAAAAAATAACAAAAGATATTGGTACACCCATGGTCTTTTCAACAACTTCCAAGGTTCAGAAAACTTGCTTTTCTGAACTCAAATGCGCTAGGAAACAACTCTTTATGGTTCTCAATTTCATTGTTATTGTGATGTCCGCCTTTGCGTTCGGATATTTCCTTCCTGATTTAATGTTCGCCAGTTATTCTATATCACTCTTCTCGCGTATTGTCTGTGGTTTGTTGTGTGCGGCAGTAGTTCTGGTTGCTGACTTCTACTTCCTGCTTAGAAATTTCAGTTCATTGGAGAAAATGTATGGGNTGATCTAANTTTGCATGGTNTGGGAGTACTGATNGTTCANAATTATTAATGAAATACTTTGAAATACTCGTACAGGGTTATGCAGCCTTNCTAACTAGTTTTTTCGATAACTATGCGGTCAAAGAAAACTTGCTCCCTTTAAATGCATNACAGAATTTCACCTTTAGGGCCTTAATAAAACTTTTAAGATATAANTACCTGAAAC]

[+] EMBL CD081919             [CTCGCGGCCAAAAATTCGGCACGAGGGCTCAAAAATTCAATAAACCAAGTACTAGAAAAAAATTCAGTTGTCCCGTTTTCAGTTGTAAATGACTGCTATCACCTAACGAAGATGCTGTCGGATACTAGCAAGGACAATATTTATCTCCAATTTTGGCGCATTTCTCTGGACACTTCAATAGTCTTTCCAGCGATAAAGCAGACTTTTAGAAATCAAGTTTTTGATGCTCACTGCGAAGAACTAAAAAATAAATATGATAACAAAGGCTACGAAAAAATAACAAAAGATATTGGTACACCCATGGTCTTTTCAACAACTTCCAAGGTTCAGAAAACTTGCTTTTCTGAACTCAAATGCGCTAGGAAACAACTCTTTATGGTTCTCAATTTCATTGTTATTGTGATGTCCGCCTTTGCGTTCGGATATTTCCTTCCTGATTTAATGTTCGCCAGTTATTCTATATCACTCTTCTCGCGTATTGTCTGTGGTTTGTTGTGTGCGGCAGTAGTTCTGGTTGCTGACTTCTACTTCCTGCTTAGAAATTTCAGTTCATTGGAGAAAATGTATGGGNTGATCTAANTTTGCATGGTNTGGGAGTACTGATNGTTCANAATTATTAATGAAATACTTTGAAATACTCGTACAGGGTTATGCAGCCTTNCTAACTAGTTTTTTCGATAACTATGCGGTCAAAGAAAACTTGCTCCCTTTAAATGCATNACAGAATTTCACCTTTAGGGCCTTAATAAAACTTTTAAGATATAANTACCTGAAAC]




>consensus_8594#1
CTCGCGGCCAAAAATTCGGCACGAGGGCTCAAAAATTCAATAAACCAAGTACTAGAAAAA
AATTCAGTTGTCCCGTTTTCAGTTGTAAATGACTGCTATCACCTAACGAAGATGCTGTCG
GATACTAGCAAGGACAATATTTATCTCCAATTTTGGCGCATTTCTCTGGACACTTCAATA
GTCTTTCCAGCGATAAAGCAGACTTTTAGAAATCAAGTTTTTGATGCTCACTGCGAAGAA
CTAAAAAATAAATATGATAACAAAGGCTACGAAAAAATAACAAAAGATATTGGTACACCC
ATGGTCTTTTCAACAACTTCCAAGGTTCAGAAAACTTGCTTTTCTGAACTCAAATGCGCT
AGGAAACAACTCTTTATGGTTCTCAATTTCATTGTTATTGTGATGTCCGCCTTTGCGTTC
GGATATTTCCTTCCTGATTTAATGTTCGCCAGTTATTCTATATCACTCTTCTCGCGTATT
GTCTGTGGTTTGTTGTGTGCGGCAGTAGTTCTGGTTGCTGACTTCTACTTCCTGCTTAGA
AATTTCAGTTCATTGGAGAAAATGTATGGGNTGATCTAANTTTGCATGGTNTGGGAGTAC
TGATNGTTCANAATTATTAATGAAATACTTTGAAATACTCGTACAGGGTTATGCAGCCTT
NCTAACTAGTTTTTTCGATAACTATGCGGTCAAAGAAAACTTGCTCCCTTTAAATGCATN
ACAGAATTTCACCTTTAGGGCCTTAATAAAACTTTTAAGATATAANTACCTGAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8594#0      CGATCAATCTGGAGTTCCTCCTTACCGATAAACTTTCAACGTATTTGTCCAAGGTTGGTG 60
consensus_8594#1      ------------------------------------------------------CTCGCG 6
                                                                             * * *

consensus_8594#0      GTCTAGATATATGCTCACCAGAACTCAAAAATTCAATAAACCAAGTACTAGAAAAAAATT 120
consensus_8594#1      GCCAAAAATTCGGC--ACGAGGGCTCAAAAATTCAATAAACCAAGTACTAGAAAAAAATT 64
                      * * * *  *  **  ** **  *************************************

consensus_8594#0      CAGTTGTCCCGTTTTCAGTTGTAAATGACTGCTATCACCTAACGAAGATGCTGTCGGATA 180
consensus_8594#1      CAGTTGTCCCGTTTTCAGTTGTAAATGACTGCTATCACCTAACGAAGATGCTGTCGGATA 124
                      ************************************************************

consensus_8594#0      CTAGCAAGGACAATATTTATCTCCAATTTTGGCGCATTTCTCTGGACACTTCAATAGTCT 240
consensus_8594#1      CTAGCAAGGACAATATTTATCTCCAATTTTGGCGCATTTCTCTGGACACTTCAATAGTCT 184
                      ************************************************************

consensus_8594#0      TTCCAGCGATAAAGCAGACTTTTAGAAATCAAGTTTTTGATGCTCACTGCGAAGAACTAA 300
consensus_8594#1      TTCCAGCGATAAAGCAGACTTTTAGAAATCAAGTTTTTGATGCTCACTGCGAAGAACTAA 244
                      ************************************************************

consensus_8594#0      AAAATAAGTATGATAACAAAGGCTACGAAAAAATAACAAAAGATATTGGTACACCCATGG 360
consensus_8594#1      AAAATAAATATGATAACAAAGGCTACGAAAAAATAACAAAAGATATTGGTACACCCATGG 304
                      ******* ****************************************************

consensus_8594#0      TCTTTTCAACAACTTCCAAGGTTCAGAAAACTTGCTTTTCTGAACTCAAATGCGCTAGGA 420
consensus_8594#1      TCTTTTCAACAACTTCCAAGGTTCAGAAAACTTGCTTTTCTGAACTCAAATGCGCTAGGA 364
                      ************************************************************

consensus_8594#0      AACAACTCTTTATGGTTCTCAATTTCATTGTTATTGTGATGTCCGCCTTTGCGTTCGGAT 480
consensus_8594#1      AACAACTCTTTATGGTTCTCAATTTCATTGTTATTGTGATGTCCGCCTTTGCGTTCGGAT 424
                      ************************************************************

consensus_8594#0      ATTTCCTTCCTGATTTAATGTTCGCCAGTTATTCTATATCACTCTTCTCGCGTATTGTCT 540
consensus_8594#1      ATTTCCTTCCTGATTTAATGTTCGCCAGTTATTCTATATCACTCTTCTCGCGTATTGTCT 484
                      ************************************************************

consensus_8594#0      GTGGTTTGTTGTGTGCGGCAGTAGTTCTGGTTGCTGACTTCTACTTCCTGCTTAGAAATT 600
consensus_8594#1      GTGGTTTGTTGTGTGCGGCAGTAGTTCTGGTTGCTGACTTCTACTTCCTGCTTAGAAATT 544
                      ************************************************************

consensus_8594#0      TCAGTTCATTGGAGAAAATGTATGGGTGATTCTTAATTTGCAATGTTTTGGGAGTACTGA 660
consensus_8594#1      TCAGTTCATTGGAGAAAATGTATGGGNTGATCTAANTTTGCA-TGGTNTGGGAGTACTGA 603
                      **************************    *** * ****** ** * ************

consensus_8594#0      TGTTTCAGACTTATTAATGAATAACTTTGAATAACTCGTACAGGTTTATGCAGCCTTCTT 720
consensus_8594#1      TNGTTCANAATTATTAATGAAATACTTTGAAATACTCGTACAGGGTTATGCAGCCTTNCT 663
                      *  **** * ***********  ********  *********** ************  *

consensus_8594#0      AACTAGTTTTTCGGATACTTATGCGGTCAAATGAGACTTTGCTACACTTTAAATGCATCA 780
consensus_8594#1      AACTAGTTTTTTCGATAACTATGCGGTCAAA-GAAAACTTGCT-CCCTTTAAATGCATNA 721
                      ***********  ****  ************ ** *  ***** * ************ *

consensus_8594#0      CCAGAATTTTCACTCTCAGTGCCTTCTATCAAGCTTTTCAGGATAATAAGTAACATGAAA 840
consensus_8594#1      C-AGAATTT-CACCTTTAGGGCCT--TAATAAAACTTTTAAGATA-TAANTACC-TGAAA 775
                      * ******* ***  * ** ****  **  **   *** * **** *** ** * *****

consensus_8594#0      CGT 843
consensus_8594#1      C-- 776
                      *