These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8597#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 902 fasta sequence [GTACTGGGATCAATCGTAAAAACACAATATTTTCGAAAATCTTTACGGAAAATAAAATCCTTCTCACGAATAGCATTCACCTCATCAACAGACTTACGAACTGATTCAATGACAATATCAGGAA-AC-TGAAAAGCTGCATCCACACCCCAAATAAATCCTGCGCCAACTAAAATCCTATCCGTCTCATCCTGAATCAGAGTGGAAGAGTCACAGGACAATTCTCGTAACAGCTCCCCCTTCGGGAACATACTCGAATTAAGCCATTCAGTGATACGACCAATGAAACGAACGTTTTTGTAGGTTTCTGGATTTTTCAGGAATCCTTCCGGACAAGCTTCACGAGGTATGAAGACTCGTGGTAGGCGTGTATCCGTAGGTATGAGCACAGCATTCCTCCAATTAGACAGAGCCGGATCTGTACGCATAGGTTCTGTTTGGTTATTATTCTGATCACCTTTCGGAGATAC-TTTTTTCGGAGTTTGGAAATTACTAGGAATTTGAAGATTTCCAATGAAAGCACGGGAATGTAGAGACTGAAGGATTCCAACAACATGGCCAGTCCTTTGTATAATCGCCCACCAAGCTCTGTGACTTTGCACATCATGCTCACCTGAGGAGGAATCAGTAGGATCTAAAGGTGAATCTAGATCCCGTATGATCTCTTCTGCAAGACGACTTCCTATGACTTGTTCTAACCCCATAGGTTGAATCTTAAGAAACTGCTCCAAAGTAACATATCTAGGTTTCTTCTTCTGATTTGAATCCCCGATTTCTCTTATGGTTGATTCATCGATAAAAGAATCAAATACCCTCCAGTTACGCTTTGGTTCCAACATGACAGCAACGATATCATTTGGTAGTGCTCGGTTTCTGGATGCTAAAGTTGAGATATATACATCAGC] [+] EMBL CD129403 [GTACTGGGATCAATCGTAAAAACACAATATTTTCGAAAATCTTTACGGAAAATAAAATCCTTCTCACGAATAGCATTCACCTCATCAACAGACTTACGAACTGATTCAATGACAATATCAGGAA AC TGAAAAGCTGCATCCACACCCCAAATAAATCCTGCGCCAACTAAAATCCTATCCGTCTCATCCTGAATCAGAGTGGAAGAGTCACAGGACAATTCTCGTAACAGCTCCCCCTTCGGGAACATACTCGAATTAAGCCATTCAGTGATACGACCAATGAAACGAACGTTTTTGTAGGTTTCTGGATTTTTCAGGAATCCTTCCGGACAAGCTTCACGAGGTATGAAGACTCGTGGTAGGCGTGTATCCGTAGGTATGAGCACAGCATTCCTCCAATTAGACAGAGCCGGATCTGTACGCATAGGTTCTGTTTGGTTATTATTCTGATCACCTTTCGGAGACACTTTTTTTCGGAGTTTGGAAATTACTAGGAATTTGAAGATTTCCAATGAAAGCACGGGAATGTAGAGACTGAAGGATTCCAACAACATGGCCAGTCCTTTGTATAATCGCCCACCAAGCTCTGTGACTTTGCACATCATGCTCACCTGAGGAGGAATCAGTAGGATCTAAAGGTGAATCTAGATCCCGTATGATCTCTT ] [+] EMBL CD111705 [ tAATATCAGGAATACATGAAAAGCTGCATCCACACCCCAAATAAATCCTGCGCCAACTAAAATCCTATCCGTCTCATCCTGAATCAGAGTGGAAGAGTCACAGGACAATTCTCGTAACAGCTCCCCCTTCGGGAACATACTCGAATTAAGCCATTCAGTGATACGACCAATGAAACGAACGTTTTTGTAGGTTTCTGGATTTTTCAGGAATCCTTCCGGACAAGCTTCACGAGGTATGAAGACTCGTGGTAGGCGTGTATCCGTAGGTATGAGCACAGCATTCCTCCAATTAGACAGAGCCGGATCTGTACGCATAGGTTCTGTTTGGTTATTATTCTGATTACCTTTCGGAGATAC TTTTTTCGGAGTTTGGAAATTACTAGGAATTTGAAGATTTCCAATGAAAGCACGGGAATGTAGAGACTGAAGGATTCCAACAACATGGCCAGTCCTTTGTATAATCGCCCACCAAGCTCTGTGACTTTGCACAT ] [-] EMBL CD146720 [ GCGCCAACTAAAATCCTATCCGTCTCATCCTGAATCAGAGTGGAAGAGTCACAGGACAATTCTCGTAACAGCTCCCCCTTCGGGAACATACTCGAATTAAGCCATTCAGTGATACGACCAATGAAACGAACGTTTTTGTAGGTTTCTGGATTTTTCAGGAATCCTTCCGGACAAGCTTCACGAGGTATGAAGACTCGTGGTAGGCGTGTATCCGTAGGTATGAGCACAGCATTCCTCCAATTAGACAGAGCCGGATCTGTACGCATAGGTTCTGTTTGGTTATTATTCTGATCACCTTTCGGAGATAC TTCTTTCGGAGTTTGGAAATTACTAGGAATTTGAAGATTTCCAATGAAAGCACGGGAATGTAGAGACTGAAGGATTCCAACAACATGGCCAGTCCTTTGTATAATCGCCCACCAAGCTCTGTGACTTTGCATATCATGCTCACCTGAGGAGGAATCAGTAGGATCTAAAGGTGAATCTAGATCCCGTATGA ] [+] EMBL CD144440 [ TGACTTTGCATATCATGCTCACCTGAGGAGGAATCAGTAGGATCTAAAGGTGAATCTAGATCCCGTATGATCTCTTCTGCAAGACGACTTCCTATGACTTGTTCTAACCCCATAGGTTGAATCTTAAGAAACTGCTCCAAAGTAACATATCTAGGTTTCTTCTTCTGATTTGAATCCCCGATTTCTCTTATGGTTGATTCATCGATAAAAGAATCAAATACCCTCCAGTTACGCTTTGGTTCCAACATGACAGCAACGATATCATTTGGTAGTGCTCGGTTTCTGGATGCTAAAGTTGAGATATATACATCAGC] consensusID : consensus_8597#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 532 fasta sequence [CAGGGTGATCAATAAATCCCTGAGCATCTTCATAACTGAGTTTACAACACGAACGAATAAATGTACGGCCAAACCATGTTGTTAAAATCTTAGCGTCCTCAGTTACAGTGAAGACCACAGAAAACGCTAATTTATCTTCTCCTGGATTAAGACTGCATTGTTCTTCACAGAGTAGACGTGGAAGCATGGGCACGCACAGTTGCACTAAATATATAGAAGTTGCTCTGGACGCCGCTTCCTTATCAACTAGACTGTTTGGTTTCACAAAATATGAAACATCAGCTATATGTACACCAACGAACTGATTCAATGACAATATCAGGAAACTGAAAAGCTGCATCCACACCCCAAATAAATCCTGCGCCAACTAAAATCCTATCCGTCTCATCCTGAATCAGAGTGGAAGAGTCACAGGACAATTCTCGTAACAGCTCCCCCTTCGGGAACATACTCGAATTAAGCCATTCAGTGATACGACCAATGAAACGAACGTTTTTGTAGGTTTCTGGATTTTTCAGGAATCCTTCCGGGT] [-] EMBL CD118852 [CAGGGTGATCAATAAATCCCTGAGCATCTTCATAACTGAGTTTACAACACGAACGAATAAATGTACGGCCAAACCATGTTGTTAAAATCTTAGCGTCCTCAGTTACAGTGAAGACCACAGAAAACGCTAAATTATCTTCTCCTGGATTAAGACTGCATTGTTCTTCACAGAGTAGGCGTGGAAGCATGGGCACGCACAGTTGCACTAAATATATAGAAGTTGCTCTGGACGCCGCTTCCTTATCAACTAGACTGTTTGGTTTCACAAAATATGAAACATCAGCTATATGTACACCAACGAACTGATTCAATGACAATATCAGGAAACTGAAAAGCTGCATCCACACCCCAAATAAATCCTGCGCCAACTAAAATCCTATCCGTCTCATCCTGAATCAGAGTGGAAGAGTCACAGGACAATTCTCGTAACAGCTCCCCCTTCGGGAACATACTCGAATTAAGCCATTCAGTGATACGACCAATGAAACGAACGTTTTTGTAGGTTTCTGGATTTTTCAGGAATCCTTCCGGGT] [-] EMBL CD118717 [CAGGGTGATCAATAAATCCCTGAGCATCTTCATAACTGAGTTTACAACACGAACGAATAAATGTACGGCCAAACCATGTTGTTAAAATCTTAGCGTCCTCAGTTACAGTGAAGACCACAGAAAACGCTAATTTATCTTCTCCTGGATTAAGACTGCATTGTTCTTCACAGAGTAGACGTGGAAGCATGGGCACGCACAGTTGCACTAAATATATAGAAGTTGCTCTGGACGCCGCTTCCTTATCAACTAGACTGTTTGGTTTCACAAAATATGAAACATCAGCTATATGTACACCAACGAACTGATTCAATGACAATATCAGGAAACTGAAAAGCTGCATCCACACCCCAAATAAATCCTGCGCCAACTAAAATCCTATCCGTCTCATCCTGAATCAGAGTGGAAGAGTCACAGGACAATTCTCGTAACAGCTCCCCCTTCGGGAACATACTCGAATTAAGCCATTCAGTGATACGACCAATGAAACGAACGTTTTTGTAGGTTTCTGGATTTTTCAGGAA ] [-] EMBL CD118809 [ AATAAATGTACGGCCAAACCATGTTGTTAAAATCTTAGCGTCCTCAGTTACAGTGAAGACCACAGAAAACGCTAATTTATCTTCTCCTGGATTAAGACTGCATTGTTCTTCACAGAGTAGACGTGGAAGCATGGGCACGCACAGTTGCACTAAATATATAGAAGTTGCTCTGGACGCCGCTTCCTTATCAACTAGACTGTTTGGTTTCACAAAATATGATACATCAGCTATATGTACACCAACGAACTGATTCAATGACAATATCAGGAAACTGAAAAGCTGCATCCACACCCCAAATAAATCCTGCGCCAACTAAAATCCTATCCGTCTCATCCTGAATCAGAGTGGAAGAGTCACAGGACAATTCTCGTAACAGCTCCCCCTTCGGGAACATACTCGAATTAAGCCATTCAGTGATACGACCAATGAAACGAACGTTTTTGTAGGTTTCTGAATTTTTCAGGAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8597#0 ------------------------------------------------------------ consensus_8597#1 CAGGGTGATCAATAAATCCCTGAGCATCTTCATAACTGAGTTTACAACACGAACGAATAA 60 consensus_8597#0 ------------------------------------------------------------ consensus_8597#1 ATGTACGGCCAAACCATGTTGTTAAAATCTTAGCGTCCTCAGTTACAGTGAAGACCACAG 120 consensus_8597#0 ------------------------------------------------------------ consensus_8597#1 AAAACGCTAATTTATCTTCTCCTGGATTAAGACTGCATTGTTCTTCACAGAGTAGACGTG 180 consensus_8597#0 ---------------GTACTGGGATCAATCGTAAAAACACAATATTTTCGAAAATCTTTA 45 consensus_8597#1 GAAGCATGGGCACGCACAGTTGCACTAAATATATAGAAGTTGCTCTGGACGCCGCTTCCT 240 * * * * ** ** * * * * consensus_8597#0 CGGAAAATAAAATCCTT---CTCACGAA-TAGCATTCACC--TCATCAACAGACTTACGA 99 consensus_8597#1 TATCAACTAGACTGTTTGGTTTCACAAAATATGAAACATCAGCTATATGTACACCAACGA 300 ** ** * * ** **** ** ** * ** * ** * ** **** consensus_8597#0 ACTGATTCAATGACAATATCAGGAAACTGAAAAGCTGCATCCACACCCCAAATAAATCCT 159 consensus_8597#1 ACTGATTCAATGACAATATCAGGAAACTGAAAAGCTGCATCCACACCCCAAATAAATCCT 360 ************************************************************ consensus_8597#0 GCGCCAACTAAAATCCTATCCGTCTCATCCTGAATCAGAGTGGAAGAGTCACAGGACAAT 219 consensus_8597#1 GCGCCAACTAAAATCCTATCCGTCTCATCCTGAATCAGAGTGGAAGAGTCACAGGACAAT 420 ************************************************************ consensus_8597#0 TCTCGTAACAGCTCCCCCTTCGGGAACATACTCGAATTAAGCCATTCAGTGATACGACCA 279 consensus_8597#1 TCTCGTAACAGCTCCCCCTTCGGGAACATACTCGAATTAAGCCATTCAGTGATACGACCA 480 ************************************************************ consensus_8597#0 ATGAAACGAACGTTTTTGTAGGTTTCTGGATTTTTCAGGAATCCTTCCGGACAAGCTTCA 339 consensus_8597#1 ATGAAACGAACGTTTTTGTAGGTTTCTGGATTTTTCAGGAATCCTTCCGGGT-------- 532 ************************************************** consensus_8597#0 CGAGGTATGAAGACTCGTGGTAGGCGTGTATCCGTAGGTATGAGCACAGCATTCCTCCAA 399 consensus_8597#1 ------------------------------------------------------------ consensus_8597#0 TTAGACAGAGCCGGATCTGTACGCATAGGTTCTGTTTGGTTATTATTCTGATCACCTTTC 459 consensus_8597#1 ------------------------------------------------------------ consensus_8597#0 GGAGATACTTTTTTCGGAGTTTGGAAATTACTAGGAATTTGAAGATTTCCAATGAAAGCA 519 consensus_8597#1 ------------------------------------------------------------ consensus_8597#0 CGGGAATGTAGAGACTGAAGGATTCCAACAACATGGCCAGTCCTTTGTATAATCGCCCAC 579 consensus_8597#1 ------------------------------------------------------------ consensus_8597#0 CAAGCTCTGTGACTTTGCACATCATGCTCACCTGAGGAGGAATCAGTAGGATCTAAAGGT 639 consensus_8597#1 ------------------------------------------------------------ consensus_8597#0 GAATCTAGATCCCGTATGATCTCTTCTGCAAGACGACTTCCTATGACTTGTTCTAACCCC 699 consensus_8597#1 ------------------------------------------------------------ consensus_8597#0 ATAGGTTGAATCTTAAGAAACTGCTCCAAAGTAACATATCTAGGTTTCTTCTTCTGATTT 759 consensus_8597#1 ------------------------------------------------------------ consensus_8597#0 GAATCCCCGATTTCTCTTATGGTTGATTCATCGATAAAAGAATCAAATACCCTCCAGTTA 819 consensus_8597#1 ------------------------------------------------------------ consensus_8597#0 CGCTTTGGTTCCAACATGACAGCAACGATATCATTTGGTAGTGCTCGGTTTCTGGATGCT 879 consensus_8597#1 ------------------------------------------------------------ consensus_8597#0 AAAGTTGAGATATATACATCAGC 902 consensus_8597#1 ----------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||