cluster # 8617

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Schistosoma mansoni
cluster # 8617 cluster # 8617 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8617#0 length = 887 sequences # 3

consensus_8617#1 length = 450 sequences # 1
consensus_8617#2 length = 413 sequences # 3

consensusID : consensus_8617#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 887
fasta sequence

                              [CCAANAATTTTGCACGAGGCTCTTTGGACTGTGGAAGAGGTCGATTTATCCAAAGATTTCTACATTGGGAGTCTTTAAAAGTTGGGGAACGTCATTTCATATCCTACGTGTTAGCCTTCTTTGCGGCGAGTGACGGAATTGTCCTCGAGAACCTCCTGGAACGCTTCAGCCAAGAAGTCCAGATTCCAGAGGTTCGTTGTTTCTATGGGATGCAGATAGCTATCGAGAATATTCACTCTGAAATGTACTCTTTATTGATTGATACATACATCAAAGACTCTAAAGAAAGGGACTTTCTCTTCAACGCCATAAGCAACTTAACTTGTGTTGCTAAAAAGGCTCAGTGGGCATTAGATTGGATTGGTGATTCTAAATCTACTTTTGCAGAACGCTTAGTTGCTTTTGCAGCAGTGGAAGGTGTCTTTTTTTCTGGTAGCTTTGCAGCTATATTCTGGCTTAAGAAACGAGGTCTTATGCCTGGACTGTCTTTTAGCAATGAATTAATCAGTAGAGACGAAGGACTACATTGTGATTTCGCTTGTCTATTGTTTAAACATATTATC-AAAAAGCCTCCCAAAGAACGTGTTGAGTCAATAATAAGAGAGGCAGTTCTGATAGAACAGGAGTTTTTATCCGAAGCCCTACCAGTCAGCTTAATTGGGATGAATTGCANATTGATGTGTCAGTACATTGAATTTATCGCTGACAGGCTACTGGTTGAACTTGGTTATGAAAAGATGTATCATTCTGACCATCTTTTGACTTCATGGAAACATATCNATCGAGGGAAGACTNACTCTTGAGAAGCGAGTGGTGAATATCACGGGCTGGNTGTATGTCTGAGCGAGAGCGATCACCATNACTTTCTGGTGATGAGATTTTATTAC]

[+] EMBL CD080801             [CCAANAATTTTGCACGAGGCTCTTTGGACTGTGGAAGAGGTCGATTTATCCAAAGATTTCTACATTGGGAGTCTTTAAAAGTTGGGGAACGTCATTTCATATCCTACGTGTTAGCCTTCTTTGCGGCGAGTGACGGAATTGTCCTCGAGAACCTCCTGGAACGCTTCAGCCAAGAAGTCCAGATTCCAGAGGTTCGTTGTTTCTATGGGATGCAGATAGCTATCGAGAATATTCACTCTGAAATGTACTCTTTATTGATTGATACATACATCAAAGACTCTAAAGAAAGGGACTTTCTCTTCAACGCCATAAGCAACTTAACTTGTGTTGCTAAAAAGGCTCAGTGGGCATTAGATTGGATTGGTGATTCTAAATCTACTTTTGCAGAACGCTTAGTTGCTTTTGCAGCAGTGGAAGGTGTCTTTTTTTCTGGTAGCTTTGCAGCTATATTCTGGCTTAAGAAACGAGGTCTTATGCCTGGACTGTCTTTTAGCAATGAATTAATCAGTAGAGACGAAGGACTACATTGTGATTTCGCTTGTCTATTGTTTAAACATATTATC AAAAAGCCTCCCAAAGAACGTGTTGAGTCAATAATAAGAGAGGCGGTTCTGATAGAACAGGAGTTTTTATCCGAAGCCCTACCAGTCAGCTTAATTGGGATGAATTGCANATTGATGTGTCAGTACATTGAATTTATCGCTGACAGGCTACTGGTTGAACTTGGTTATGAAAAGATGTATCATTCTGACCATCTTTTGACTTCATGGAAACATATCNATCGAGGGAAGACTNACTCTTGAGAAGCGAGTGGTGAATATCACGGGCTGGNTGTATGTCTGAGCGAGAGCGATCACCATNACTTTCTGGTGATGAGATTTTATTAC]
[+] EMBL CD139907             [                                                                                                                                                                                                                                                                                                  GACTTTCTCTTCAACGCCATAAGCAACTTAACTTGTGTTGCTAAAAAGGCTCAGTGGGCATTAGATTGGATTGGTGATTCTAAATCTACTTTTGCAGAACGCTTAGTTGCTTTTGCAGCAGTGGAAGGTGTCTTTTTTTCTGGTAGCTTTGCAGCTATATTCTGGCTTAAGAAACGAGGTCTTATGCCTGGACTGTCTTTTAGCAATGAATTAATCAGTAGAGACGAAGGACTACATTGTGATTTCGCTTGTCTATTGTTTAAACATATTATCAAAAAAGCCTCCCAAAGAACGTGTTGAGTCAATAATAAGAGAGGCAGTTCTGATA                                                                                                                                                                                                                                                                              ]
[-] EMBL CD139982             [                                                                                                                                                                                                                                                                                                                                                                                  TAAATCTACTTTGNCAGAACGCTTAGTTGCTTTGNCAGCAGTGGAAGGTGTCTTTTTTTCTGGTAGCTTTGCAGCTATATTCTGGCTTAAGAAACGAGGTCTTATGCCTGGACTGTCTTTTAGCAATGAATTAATCAGTAGAGACGAAGGACTACATTGTGATTTCGCTTGTCTATTGTTTAAACATATTATC AAAAAGCCTCCCAAAGAACGTGTTGAGTCAATAATAAGAGAGGCAGTTCTGATAGAACAGGAGTTTTTATCCGAAGCCCTACCAGTCAGCTTAATTGGGATGAATTGCAAATTGATGTGTCAGTACATTGAATTTATCGCTGACAGGCTACTGGTTGA                                                                                                                                                                      ]




>consensus_8617#0
CCAANAATTTTGCACGAGGCTCTTTGGACTGTGGAAGAGGTCGATTTATCCAAAGATTTC
TACATTGGGAGTCTTTAAAAGTTGGGGAACGTCATTTCATATCCTACGTGTTAGCCTTCT
TTGCGGCGAGTGACGGAATTGTCCTCGAGAACCTCCTGGAACGCTTCAGCCAAGAAGTCC
AGATTCCAGAGGTTCGTTGTTTCTATGGGATGCAGATAGCTATCGAGAATATTCACTCTG
AAATGTACTCTTTATTGATTGATACATACATCAAAGACTCTAAAGAAAGGGACTTTCTCT
TCAACGCCATAAGCAACTTAACTTGTGTTGCTAAAAAGGCTCAGTGGGCATTAGATTGGA
TTGGTGATTCTAAATCTACTTTTGCAGAACGCTTAGTTGCTTTTGCAGCAGTGGAAGGTG
TCTTTTTTTCTGGTAGCTTTGCAGCTATATTCTGGCTTAAGAAACGAGGTCTTATGCCTG
GACTGTCTTTTAGCAATGAATTAATCAGTAGAGACGAAGGACTACATTGTGATTTCGCTT
GTCTATTGTTTAAACATATTATCAAAAAGCCTCCCAAAGAACGTGTTGAGTCAATAATAA
GAGAGGCAGTTCTGATAGAACAGGAGTTTTTATCCGAAGCCCTACCAGTCAGCTTAATTG
GGATGAATTGCANATTGATGTGTCAGTACATTGAATTTATCGCTGACAGGCTACTGGTTG
AACTTGGTTATGAAAAGATGTATCATTCTGACCATCTTTTGACTTCATGGAAACATATCN
ATCGAGGGAAGACTNACTCTTGAGAAGCGAGTGGTGAATATCACGGGCTGGNTGTATGTC
TGAGCGAGAGCGATCACCATNACTTTCTGGTGATGAGATTTTATTAC

consensusID : consensus_8617#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 450
fasta sequence

                              [AAAAACGAGGTTTTATGCCTGGACTGTTTTTTAGCAATGAATTAATCAGTAGAGGCGAAGGGCTCCATTGGGATTTCGCTTGTCTATTGTTTAAACATATTATCAAAAAGCCTCCCAAAGAACGTGTTGAGTCAATAATAAAAAAGGCGGTTTTGATAGAACAGGAGTTTTTATCCGAAGCCCTCCCAGTCAGCTTAATTGGGATGAATTGCAAATTGATGGGTCAGGCCATTGAATTTATCGCTGACAGGGTACTGGTTGAACTTGGTTATGAAAAAATGTATCATTTTGCCAATCCTTTTGACTTCATGGAAAACATATCAATCGAAGGAAAGACTAACTTTTTTTAAAAGCGAGTTGGTGAAAATCAACGGGCTGGTGTTATGTTTCGAGCGAAAGGGGAATCAACCCATAACTTTTTTGTTGATGAAGATTTTTAATAAAACGAAC]

[-] EMBL CD074869             [AAAAACGAGGTTTTATGCCTGGACTGTTTTTTAGCAATGAATTAATCAGTAGAGGCGAAGGGCTCCATTGGGATTTCGCTTGTCTATTGTTTAAACATATTATCAAAAAGCCTCCCAAAGAACGTGTTGAGTCAATAATAAAAAAGGCGGTTTTGATAGAACAGGAGTTTTTATCCGAAGCCCTCCCAGTCAGCTTAATTGGGATGAATTGCAAATTGATGGGTCAGGCCATTGAATTTATCGCTGACAGGGTACTGGTTGAACTTGGTTATGAAAAAATGTATCATTTTGCCAATCCTTTTGACTTCATGGAAAACATATCAATCGAAGGAAAGACTAACTTTTTTTAAAAGCGAGTTGGTGAAAATCAACGGGCTGGTGTTATGTTTCGAGCGAAAGGGGAATCAACCCATAACTTTTTTGTTGATGAAGATTTTTAATAAAACGAAC]




>consensus_8617#1
AAAAACGAGGTTTTATGCCTGGACTGTTTTTTAGCAATGAATTAATCAGTAGAGGCGAAG
GGCTCCATTGGGATTTCGCTTGTCTATTGTTTAAACATATTATCAAAAAGCCTCCCAAAG
AACGTGTTGAGTCAATAATAAAAAAGGCGGTTTTGATAGAACAGGAGTTTTTATCCGAAG
CCCTCCCAGTCAGCTTAATTGGGATGAATTGCAAATTGATGGGTCAGGCCATTGAATTTA
TCGCTGACAGGGTACTGGTTGAACTTGGTTATGAAAAAATGTATCATTTTGCCAATCCTT
TTGACTTCATGGAAAACATATCAATCGAAGGAAAGACTAACTTTTTTTAAAAGCGAGTTG
GTGAAAATCAACGGGCTGGTGTTATGTTTCGAGCGAAAGGGGAATCAACCCATAACTTTT
TTGTTGATGAAGATTTTTAATAAAACGAAC

consensusID : consensus_8617#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 413
fasta sequence

                              [CGCAGGCCAGAAATTCGGCACGAGGGCAGCCTCGAGTTCAGTTTAGATTTGATTATGACTTCTGATTCAAATAAAGAAAATGAACTGTCTAAGTATATTAAAGAATTTACACCGGGCATTGTCGAGAAAGAAGTCAGCTATGGCAAGCAGTTCTCCGTCACAAAAAGCGAAATCGAACTAGAACCCTTACTCAAACCAAACCCACACCGTTTCGTCCTTTTCCCCATAGAATACCACGATGTCTGGCATTTTTATAAGAAGGCTGTAGCCTCTTTTTGGACTGTGGAAGAGGTCGATTTATCCAAAGATTTCATACATTGGGAGTCTTTAAAAGTTGGGGAACGTCATTTCATATCCTACGTGTTAGCCTTCTTTGCGGCGAGGGACGGAATTGTCCTCGAGAACCTCCTGGA]

[+] EMBL CD077613             [CGCAGGCCAGAAATTCGGCACGAGGGCAGCCTCGAGTTCAGTTTAGATTTGATTATGACTTCTGATTCAAATAAAGAAAATGAACTGTCTAAGTATATTAAAGAATTTACACCGGGCATTGTCGAGAAAGAAGTCAGCTATGGCAAGCAGTTCTCCGTCACAAAAAGCGAAATCGAACTAGAACCCTTACTCAAACCAAACCCACACCGTTTCGTCCTTTTCCCCATAGAATACCACGATGTCTGGCATTTTTATAAGAAGGCTGTAGCCTCTTTTTGGACTGTGGAAGAGGTCGATTTATCCAAAGATTTCATACAT                                                                                               ]
[-] EMBL CD135164             [                          CAGCCTCGAGTTCAGTTTGGATTTGATTATGACTTCTGATTCAAATAAAGAAAATGAACTGTCTAAGTATATTAAAGAATTTACACCGGGCATTGTCGAGAAAGAAGTCAGCTATGGCAAGCAGTTCTCCGTCACAAAAAGCGAAATCGAACTAGAACCCTTACTCAAACCAAACCCACACCGTTTCGTCCTTTTCCCCATAGAATACCACGATGTCTGGCATTTTTATAAGAAGGCTGTAGCCTCTTTT                                                                                                                                         ]
[+] EMBL CD081041             [                                                                                                                                                                                               aggACC AACCCACACCGTTTCGTCCTTTTCCCCATAGAATACCACGATGTCTGGCATTTTTATAAGAAGGCTGTAGCCTCTTTTTGGACTGTGGAAGAGGTCGATTTATCCAAAGATTTCATACATTGGGAGTCTTTAAAAGTTGGGGAACGTCATTTCATATCCTACGTGTTAGCCTTCTTTGCGGCGAGGGACGGAATTGTCCTCGAGAACCTCCTGGA]




>consensus_8617#2
CGCAGGCCAGAAATTCGGCACGAGGGCAGCCTCGAGTTCAGTTTAGATTTGATTATGACT
TCTGATTCAAATAAAGAAAATGAACTGTCTAAGTATATTAAAGAATTTACACCGGGCATT
GTCGAGAAAGAAGTCAGCTATGGCAAGCAGTTCTCCGTCACAAAAAGCGAAATCGAACTA
GAACCCTTACTCAAACCAAACCCACACCGTTTCGTCCTTTTCCCCATAGAATACCACGAT
GTCTGGCATTTTTATAAGAAGGCTGTAGCCTCTTTTTGGACTGTGGAAGAGGTCGATTTA
TCCAAAGATTTCATACATTGGGAGTCTTTAAAAGTTGGGGAACGTCATTTCATATCCTAC
GTGTTAGCCTTCTTTGCGGCGAGGGACGGAATTGTCCTCGAGAACCTCCTGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8617#0      CCAANAATTTTGCACGAGGCTCTTTGGACTGTGGAAGAGGTCGATTTATCCAAAGATTTC 60
consensus_8617#1      ------------------------------------------------------------
consensus_8617#2      ------------------------------------------------------------
                                                                                  

consensus_8617#0      TACATTGGGAGTCTTTAAAAGTTGGGGAACGTCATTTCATATCCTACGTGTTAGCCTTCT 120
consensus_8617#1      ------------------------------------------------------------
consensus_8617#2      ------------------------------------------------------------
                                                                                  

consensus_8617#0      TTGCGGCGAGTGACGGAATTGTCCTCGAGAACCTCCTGGAACGCTTCAGCCAAGAAGTCC 180
consensus_8617#1      ------------------------------------------------------------
consensus_8617#2      ------------------------------------------------------------
                                                                                  

consensus_8617#0      AGATTCCAGAGGTTCGTTGTTTCTATGGGATGCAGATAGCTATCGAGAATATTCACTCTG 240
consensus_8617#1      ------------------------------------------------------------
consensus_8617#2      ------------------------------------------------------------
                                                                                  

consensus_8617#0      AAATGTACTCTTTATTGATTGATACATACATCAAAGACTCTAAAGAAAGGGACTTTCTCT 300
consensus_8617#1      ------------------------------------------------------------
consensus_8617#2      ------------------------------------------------------------
                                                                                  

consensus_8617#0      TCAACGCCATAAGCAACTTAACTTGTGTTGCTAAAAAGGCTCAGTGGGCATTAGATTGGA 360
consensus_8617#1      ------------------------------------------------------------
consensus_8617#2      ------------------------------------------------------------
                                                                                  

consensus_8617#0      TTGGTGATTCTAAATCTACTTTTGCAGAACGCTTAGTTGCTTTTGCAGCAGTGGAAGGTG 420
consensus_8617#1      ------------------------------------------------------------
consensus_8617#2      ------------------------------------------------------------
                                                                                  

consensus_8617#0      TCTTTTTTTCTGGTAGCTTTGCAGCTATATTCTGGCTTAAGAAACGAGGTCTTATGCCTG 480
consensus_8617#1      ---------------------------------------AAAAACGAGGTTTTATGCCTG 21
consensus_8617#2      --------------------------------------------------CGCAGGCCAG 10
                                                                           * *** *

consensus_8617#0      GACTGTCTTTTAGCAATGAATTAATCAGTAGAGACGAAGGACTACATTGTGATTTCGCTT 540
consensus_8617#1      GACTGTTTTTTAGCAATGAATTAATCAGTAGAGGCGAAGGGCTCCATTGGGATTTCGCTT 81
consensus_8617#2      AA--ATTCGGCACGAGGGCAGCCTCGAGTTCAGTTTA--GATTTGATTATGACTTCTGAT 66
                       *   *     *  *  * *      ***  **   *  *  *  ***  ** ***   *

consensus_8617#0      GTCTATTGTTTAAACATATTATCAAAAAGCCTCCCAAAGAACGTGT-TGAGTCAATAATA 599
consensus_8617#1      GTCTATTGTTTAAACATATTATCAAAAAGCCTCCCAAAGAACGTGT-TGAGTCAATAATA 140
consensus_8617#2      TCAAATAAAGAAAATGAACTGTCTA--AGTATATTAAAGAATTTACACCGGGCATTGTCG 124
                          **     ***   * * ** *  **  *   ******  *      * ** *    

consensus_8617#0      AGAGAGGCAGTTCTGATAGAACAGGAGTTTTTATCCGAAGCCCTACCAGTCAGCTTAATT 659
consensus_8617#1      AAAAAGGCGGTTTTGATAGAACAGGAGTTTTTATCCGAAGCCCTCCCAGTCAGCTTAATT 200
consensus_8617#2      AGAAAGAAGTCAGCTATGGCA-AGCAGTTCTCCGTCACAAAAAGCGAAATCG----AACT 179
                      * * **         ** * * ** **** *    *  *        * **     ** *

consensus_8617#0      GGGATGAAT-TGCANATTGATGTGTCAGTACATTGAATT-TATCGCTGACAGGCTACTGG 717
consensus_8617#1      GGGATGAAT-TGCAAATTGATGGGTCAGGCCATTGAATT-TATCGCTGACAGGGTACTGG 258
consensus_8617#2      AGAACCCTTACTCAAACCAA--ACCCACACCGTTTCGTCCTTTTCCCCATAGAATACCA- 236
                       * *    *   ** *   *     **   * **   *  * *  *  * **  ***   

consensus_8617#0      TTGAACTTGGTTATGAAAAGATGTATCATTCTGACCATC-TTTTGACTTCATGGAAA-CA 775
consensus_8617#1      TTGAACTTGGTTATGAAAAAATGTATCATTTTGCCAATCCTTTTGACTTCATGGAAAACA 318
consensus_8617#2      -CGATGTCTGGCATTTTTATAAGAAGGCTGTAGCC--TCTTTTTGGACT-GTGGAAG--A 290
                        **  *  *  **    * * * *   *   * *  ** *****   *  *****   *

consensus_8617#0      TATCNATCGAGGGAA-GACTNACTCTTG--AGAAGCGAGT-GGTGAATATCA-CGGGC-T 829
consensus_8617#1      TATCAATCGAAGGAAAGACTAACTTTTTTTAAAAGCGAGTTGGTGAAAATCAACGGGC-T 377
consensus_8617#2      GGTCGATTTATCCAAAGATTTCATACATT-----GGGAGTCTTTAAAAGTTGGGGAACGT 345
                        ** **  *   ** ** *   *          * ****   * **  *    *  * *

consensus_8617#0      GGNTGTATGTCT-GAGCGAGAGCG--AT---CA--CCATNACTTTCTGGT-GATGAGATT 880
consensus_8617#1      GGTGTTATGTTTCGAGCGAAAGGGGAAT---CAACCCATAACTTTTTTGTTGATGAAGAT 434
consensus_8617#2      CATTTCATATCCTACGTGTTAGCCTTCTTTGCGGCGAGGGACGGAATTGTCCTCGAGAAC 405
                            ** *     * *  **     *   *        **    * **    **    

consensus_8617#0      TTATTAC--------- 887
consensus_8617#1      TTTTAATAAAACGAAC 450
consensus_8617#2      CTCCTGGA-------- 413
                       *