cluster # 8618

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Schistosoma mansoni
cluster # 8618 cluster # 8618 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8618#0 length = 620 sequences # 6

consensus_8618#1 length = 422 sequences # 1

consensusID : consensus_8618#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 620
fasta sequence

                              [ACACCAGGTTTAGGTAGTTTACCAGCTGTCACAATAGTAGATCAGTTAAAGATTCAAAGTCAAAATGATCGAGATAAATTGCAAGAGGCTAAAGAAAAGGTTTATCGTGTTGGCTTTTACGATGGGATTATGTTGGTTGAAAAATATAAAGGTTTAAAAGTGAATTCAGTGAAGAAACTTATTCAAGATCAATTGGTTGAAACGAATGATGCTATAATTTATTACGAGCCGGAAAATCTGGTCGTTACACGTGGTGGTGATGAAGCAGTGGTTGCTTTGTGTGATCAATGGTATCTAGATTACGGTTCAGAGGAATGGAAAGCAGAAGTCCGTAAAGCAGTAG-CCAACTTGTCAGCAACTGATGAGGTTAGACGCGGTCTTTATTCAACCGTTGACTGGTTGCATGAACATGCTTGCTCTCGTACATATGGGTTGGGTACTCGTTTACCATGGGATGATAAGTGGCTTATTGAATCTTTATCTGACTCTACAATATATATGGCATATTATACAATAGCTCATTTGTTGCAAGGCGGGTCATTACATGGTAGAAAACCTGGTCCTCTTAAAATTTGGCCAGAACACATGACACCGGAAGTGTGGGATTACATATTTTTGGG]

[+] EMBL CD163600             [ACACCAGGTTTAGGTAGTTTACCAGCTGTCACAATAGTAGATCAGTTAAAGATTCAAAGTCAAAATGATCGAGATAAATTGCAAGAGGCTAAAGAAAAGGTTTATCGTGTTGGCTTTTACGATGGGATTATGTTGGTTGAAAAATATAAAGGTTTAAAAGTGAATTCAGTGAAGAAACTTATTCAAGATCAATTGGTTGAAACGAATGATGCTATAATTTATTACGAGCCGGAAAATCTGGTCGTTACACGTGGTGGTGATGAAGCAGTGGTTGCTTTGTGTGATCAATGGTATCTAGATTACGGTTCACAGGAATGGAAAGCAGAAGTCCGTAAAGCAGTAG CCAACTTGTCAGCAACT                                                                                                                                                                                                                                                                    ]
[+] EMBL CD146775             [                                   AGTAGATCAGTTAAAGATTCAAAGTCAAAATGATCGAGATAAATTGCAAGAGGCTAAAGAAAAGGTTTATCGTGTTGGCTTTTACGATGGGATTATGTTGGTTGAAAAATATAAAGGTTTAAAAGTGAATTCAGTGAAGAAACTTATTCAAGATCAATTGGTTGAAACGAATGATGCTATAATTTATTACGAGCCGGAAAATCTGGTCGTTACACGTGGTGGTGATGAAGCAGTGGTTGCTTTGTGTGATCAATGGTATCTAGATTACGGTTCAGAGGAATGGAAAGCAGAAGTCCGTAAAGCAATAG CCAACTTGTCAGCAACTGATGAGGTTAGACGCGGTCTTTATTCAACCGTTGACTGGTTGCATGAACATGCTTGCTCTCGTACATATGGGTTGGGTACTCGTTTACCATGGGATGATAAGTGGCTTATTGAATCTTTATCTGACTCTACAATATATATGGCATATTATACAATAGCTCAT                                                                                                  ]
[-] EMBL CD146867             [                                    GTAGATCAGTTAAAGATTCAAAGTCAAAATGATCGAGATAAATTGCAAGAGGCTAAAGAAAAGGTTTATCGTGTTGGCTTTTACGATGGGATTATGTTGGTTGAAAAATATAAAGGTTTAAAAGTGAATTCAGTGAAGAAACTTATTCAAGATCAATTGGTTGAAACGAATGATGCTATAATTTATTACGAGCCGGAAAATCTGGTC                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD146996             [                                                                                                     TTATCGTGTTGGCTTTTACGATGGGATTATGTTGGTTGAAAAATATAAAGGTTTAAAAGTGAATTCAGTGAAGAAACTTATTCAAGATCAATTGGTTGAAACGAATGATGCTATAATTTATTACGAGCCGGAAAATCTGGTCGTTACACGTGGTGGTGATGAAGCAGTGGTTGCTTTGTGTGATCAATGGTATCTAGATTACGGTTCAGAGGAATGGAAAGCAGAAGTCCGTAAAGCAGTAG CCAACTTGTCAGCAACTGATGAGGTTAGACGCGGTCTTTATTCAACCGTTGACTGGTTGCATGAACATGCTTGCTCTCGTACATATGGGTTGGGTACTCGTTTACCATGGGATGATAAGTGGCTTATTGAATCTTTATCTGACTCTACAATATATATGGCATATTATACAATAGCTCATTTGT                                                                                              ]
[-] EMBL CD157374             [                                                                                                                                                                                  TTATTCAAGATCAATTGGTTGAAACGAATGATGCTATAATTTATTACGAGCCGGAAAATCTGGTCGTTACACGTGGTGGTGATGAAGCAGTGGTTGCTTTGTGTGATCAATGGTATCTAGATTACGGTTCAGAGGAATGGAAAGCAGAAGTCCGTAAAGCAGTAG CCAACTTGTCAGCAAC                                                                                                                                                                                                                                                                     ]
[+] EMBL CD187807             [                                                                                                                                                                                                                                                                                                                                     AAGTCCGTAAAGCAGTAGCCCAACTTGTCAGCAACTGATGAGGTTAGACGCGGTCTTTATTC ACCGTTGACTGGTTGCATGAACATGCTTGCTCTCGTACATATGGGTTGGG ACTCG TTACCATGGGATGATAAGTGGCTTATTGAATCTTTATCTGACTCTACAATATATATGGCATATTATACAATAGCTCATTTGTTGCAAGGCGGGTCATTACATGGTAGAAAACCTGGTCCTCTTAAAATTTGGCCAGAACACATGACACCGGAAGTGTGGGATTACATATTTTTGGG]




>consensus_8618#0
ACACCAGGTTTAGGTAGTTTACCAGCTGTCACAATAGTAGATCAGTTAAAGATTCAAAGT
CAAAATGATCGAGATAAATTGCAAGAGGCTAAAGAAAAGGTTTATCGTGTTGGCTTTTAC
GATGGGATTATGTTGGTTGAAAAATATAAAGGTTTAAAAGTGAATTCAGTGAAGAAACTT
ATTCAAGATCAATTGGTTGAAACGAATGATGCTATAATTTATTACGAGCCGGAAAATCTG
GTCGTTACACGTGGTGGTGATGAAGCAGTGGTTGCTTTGTGTGATCAATGGTATCTAGAT
TACGGTTCAGAGGAATGGAAAGCAGAAGTCCGTAAAGCAGTAGCCAACTTGTCAGCAACT
GATGAGGTTAGACGCGGTCTTTATTCAACCGTTGACTGGTTGCATGAACATGCTTGCTCT
CGTACATATGGGTTGGGTACTCGTTTACCATGGGATGATAAGTGGCTTATTGAATCTTTA
TCTGACTCTACAATATATATGGCATATTATACAATAGCTCATTTGTTGCAAGGCGGGTCA
TTACATGGTAGAAAACCTGGTCCTCTTAAAATTTGGCCAGAACACATGACACCGGAAGTG
TGGGATTACATATTTTTGGG

consensusID : consensus_8618#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 422
fasta sequence

                              [GACCGAATAGCACCCAAGACTGCTCAATGATGCTATAATTTATTACGAGCCGGAAAATCTGGTCGTTACACGTGGTGGTGATGAAGCAGTGGTTGCTTTGTGTGATCAATGGTATCTAGATTACGGTTCAGAGGAATGGAAAGCAGAAGTCCGTAAAGCAGTAGCCAACTTGTCAGCAACTGATGAGGTTAGACGCGGTCTTTATTCAACCGTTGACTGGTTGCATGAACATGTTTGCTCTCGTACATATGGGTTGGGTACTCGTTTACCATGGGATGATAAGTGGCTTATTGAATCTTTATCTGACTCTACAATATATATGGCATATTATACAATAGCTCATTTGTTGCAAGGCGGGTCATTAGATGGTAGAAAACCTGGTCCTCTTAAAATTGGCCAGACACATGACACCGGNAGTGTGG]

[+] EMBL CD150647             [GACCGAATAGCACCCAAGACTGCTCAATGATGCTATAATTTATTACGAGCCGGAAAATCTGGTCGTTACACGTGGTGGTGATGAAGCAGTGGTTGCTTTGTGTGATCAATGGTATCTAGATTACGGTTCAGAGGAATGGAAAGCAGAAGTCCGTAAAGCAGTAGCCAACTTGTCAGCAACTGATGAGGTTAGACGCGGTCTTTATTCAACCGTTGACTGGTTGCATGAACATGTTTGCTCTCGTACATATGGGTTGGGTACTCGTTTACCATGGGATGATAAGTGGCTTATTGAATCTTTATCTGACTCTACAATATATATGGCATATTATACAATAGCTCATTTGTTGCAAGGCGGGTCATTAGATGGTAGAAAACCTGGTCCTCTTAAAATTGGCCAGACACATGACACCGGNAGTGTGG]




>consensus_8618#1
GACCGAATAGCACCCAAGACTGCTCAATGATGCTATAATTTATTACGAGCCGGAAAATCT
GGTCGTTACACGTGGTGGTGATGAAGCAGTGGTTGCTTTGTGTGATCAATGGTATCTAGA
TTACGGTTCAGAGGAATGGAAAGCAGAAGTCCGTAAAGCAGTAGCCAACTTGTCAGCAAC
TGATGAGGTTAGACGCGGTCTTTATTCAACCGTTGACTGGTTGCATGAACATGTTTGCTC
TCGTACATATGGGTTGGGTACTCGTTTACCATGGGATGATAAGTGGCTTATTGAATCTTT
ATCTGACTCTACAATATATATGGCATATTATACAATAGCTCATTTGTTGCAAGGCGGGTC
ATTAGATGGTAGAAAACCTGGTCCTCTTAAAATTGGCCAGACACATGACACCGGNAGTGT
GG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8618#0      ACACCAGGTTTAGGTAGTTTACCAGCTGTCACAATAGTAGATCAGTTAAAGATTCAAAGT 60
consensus_8618#1      ------------------------------------------------------------
                                                                                  

consensus_8618#0      CAAAATGATCGAGATAAATTGCAAGAGGCTAAAGAAAAGGTTTATCGTGTTGGCTTTTAC 120
consensus_8618#1      ------------------------------------------------------------
                                                                                  

consensus_8618#0      GATGGGATTATGTTGGTTGAAAAATATAAAGGTTTAAAAGTGAATTCAGTGAAGAAACTT 180
consensus_8618#1      -----------------------------------------------------------G 1
                                                                                  

consensus_8618#0      ATTCAAGATCAATTGGTTGAAACGAATGATGCTATAATTTATTACGAGCCGGAAAATCTG 240
consensus_8618#1      ACCGAATAGCACCCAAGACTGCTCAATGATGCTATAATTTATTACGAGCCGGAAAATCTG 61
                      *   ** * **             ************************************

consensus_8618#0      GTCGTTACACGTGGTGGTGATGAAGCAGTGGTTGCTTTGTGTGATCAATGGTATCTAGAT 300
consensus_8618#1      GTCGTTACACGTGGTGGTGATGAAGCAGTGGTTGCTTTGTGTGATCAATGGTATCTAGAT 121
                      ************************************************************

consensus_8618#0      TACGGTTCAGAGGAATGGAAAGCAGAAGTCCGTAAAGCAGTAGCCAACTTGTCAGCAACT 360
consensus_8618#1      TACGGTTCAGAGGAATGGAAAGCAGAAGTCCGTAAAGCAGTAGCCAACTTGTCAGCAACT 181
                      ************************************************************

consensus_8618#0      GATGAGGTTAGACGCGGTCTTTATTCAACCGTTGACTGGTTGCATGAACATGCTTGCTCT 420
consensus_8618#1      GATGAGGTTAGACGCGGTCTTTATTCAACCGTTGACTGGTTGCATGAACATGTTTGCTCT 241
                      **************************************************** *******

consensus_8618#0      CGTACATATGGGTTGGGTACTCGTTTACCATGGGATGATAAGTGGCTTATTGAATCTTTA 480
consensus_8618#1      CGTACATATGGGTTGGGTACTCGTTTACCATGGGATGATAAGTGGCTTATTGAATCTTTA 301
                      ************************************************************

consensus_8618#0      TCTGACTCTACAATATATATGGCATATTATACAATAGCTCATTTGTTGCAAGGCGGGTCA 540
consensus_8618#1      TCTGACTCTACAATATATATGGCATATTATACAATAGCTCATTTGTTGCAAGGCGGGTCA 361
                      ************************************************************

consensus_8618#0      TTACATGGTAGAAAACCTGGTCCTCTTAAAATTTGGCCAGAACACATGACACCGGAAGTG 600
consensus_8618#1      TTAGATGGTAGAAAACCTGGTCCTCTTAAAATT-GGCCAGA-CACATGACACCGGNAGTG 419
                      *** ***************************** ******* ************* ****

consensus_8618#0      TGGGATTACATATTTTTGGG 620
consensus_8618#1      TGG----------------- 422
                      ***