cluster # 863

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Schistosoma mansoni
cluster # 863 cluster # 863 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_863#0 length = 353 sequences # 1

consensus_863#1 length = 286 sequences # 1

consensusID : consensus_863#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 353
fasta sequence

                              [TCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAGCGTTGGACCTATACCGGACCGTTGCTGTAAGCTAGGCCTATGCTGTGTGAGGGCAAGCTGCACTTGGTCTAGGCATGGAGTGACGGCAACGAGTAGGAGGGTCGCTGTGGCTAGCGGGAAGCCTCAGGCGTGAGCCTAGGTGAAGCAACCACAGGCGCAGATCTTGGTGGTAGTAGCAAATATTCAAGTGAGAACCTTGAAGGCCGAGGTGGAGAAGGGTTCCATGGGATCTACCATCAATCACAATACCA]

[+] EMBL BG931882             [TCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAGCGTTGGACCTATACCGGACCGTTGCTGTAAGCTAGGCCTATGCTGTGTGAGGGCAAGCTGCACTTGGTCTAGGCATGGAGTGACGGCAACGAGTAGGAGGGTCGCTGTGGCTAGCGGGAAGCCTCAGGCGTGAGCCTAGGTGAAGCAACCACAGGCGCAGATCTTGGTGGTAGTAGCAAATATTCAAGTGAGAACCTTGAAGGCCGAGGTGGAGAAGGGTTCCATGGGATCTACCATCAATCACAATACCA]




>consensus_863#0
TCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTC
ACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAGCGTTGGACCTATACCGGA
CCGTTGCTGTAAGCTAGGCCTATGCTGTGTGAGGGCAAGCTGCACTTGGTCTAGGCATGG
AGTGACGGCAACGAGTAGGAGGGTCGCTGTGGCTAGCGGGAAGCCTCAGGCGTGAGCCTA
GGTGAAGCAACCACAGGCGCAGATCTTGGTGGTAGTAGCAAATATTCAAGTGAGAACCTT
GAAGGCCGAGGTGGAGAAGGGTTCCATGGGATCTACCATCAATCACAATACCA

consensusID : consensus_863#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 286
fasta sequence

                              [TAGACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAGCGTTGGACCTATACCGGACCGTTGCTGTAAGCTAGGCCTATGCTGTGTGAGGGCAAGCTGCACTTGGTCTAGGCATGGAGTGACGGCAACGAGTAGGACGGTGGCCGTGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAG]

[+] EMBL BG932875             [TAGACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAGCGTTGGACCTATACCGGACCGTTGCTGTAAGCTAGGCCTATGCTGTGTGAGGGCAAGCTGCACTTGGTCTAGGCATGGAGTGACGGCAACGAGTAGGACGGTGGCCGTGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAG]




>consensus_863#1
TAGACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTCAC
CTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAGCGTTGGACCTATACCGGACC
GTTGCTGTAAGCTAGGCCTATGCTGTGTGAGGGCAAGCTGCACTTGGTCTAGGCATGGAG
TGACGGCAACGAGTAGGACGGTGGCCGTGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACA
ACTCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_863#0      TCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTC 60
consensus_863#1      --TAGACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTC 58
                       **********************************************************

consensus_863#0      ACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAGCGTTGGACCTATACCGGA 120
consensus_863#1      ACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAGCGTTGGACCTATACCGGA 118
                     ************************************************************

consensus_863#0      CCGTTGCTGTAAGCTAGGCCTATGCTGTGTGAGGGCAAGCTGCACTTGGTCTAGGCATGG 180
consensus_863#1      CCGTTGCTGTAAGCTAGGCCTATGCTGTGTGAGGGCAAGCTGCACTTGGTCTAGGCATGG 178
                     ************************************************************

consensus_863#0      AGTGACGGCAACGAGTAGGAGGGTCGCTGTGGCTAGCGGGAAGCCTCAGGCGTGAGCCTA 240
consensus_863#1      AGTGACGGCAACGAGTAGGACGGTGGCCGTGGA-AGTCGGAAGCCGCTAAGGAGTGTGTA 237
                     ******************** *** ** ****  **  ******* *    * * *  **

consensus_863#0      GGTGAAGCAACCACAGGCGCAGATCTTGGTGGTAGTAGCAAATATTCAAGTGAGAACCTT 300
consensus_863#1      A-CAACTCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAG---------- 286
                         *  ** *  * *   **        **  * * *       ** **          

consensus_863#0      GAAGGCCGAGGTGGAGAAGGGTTCCATGGGATCTACCATCAATCACAATACCA 353
consensus_863#1      -----------------------------------------------------