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Schistosoma mansoni
cluster # 8631 cluster # 8631       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8631#0 length = 1087 sequences # 6  
consensus_8631#1 length = 511 sequences # 1  

consensusID : consensus_8631#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1087
fasta sequence
                              [TGATGTTACAGATTTGCTTTTAGTTATCAATTATGACTGTCCAAGTCACTATGAGGATTATGTTCATCGTTGTGGGCGTACTGGACGTGCTGGTCGCAAAGGGTTCGCCTATACTTTCCTCACTCCCGACCAGGAGCGCAGTGCTGGAGATGTTGTTCGAGCATTCAAGCAGAGTGGTCAAAAACCACCGGAGGAGCTAATGAATATGTGGAGTGCATACAAGATCAGAATGGAACATGAAGGAAAAAAGGTATATGGTTCTTCAGGCTTCCGTGGTAAAGGATTCATGTTTGATGAAGTGGAAGCTCAGCTGAATAGTGAAAAACGGCGCCTTCAGAAAGCTGCTCTTGGTTTACAAGACTCAGATGACGAAGTTGGTGATGGAAGTGTTGATTGGGACTCAAAGATTGAAGATATGTTGGCCACGAAAACAAAAATCAAAGATGTATCAAAGGGTAATGCAGCAGAAAGTGTATCTGAAACTGCTGAAGTTAGTGCTCAAGCTGGACAAGCAGTCGTAAACGCAGCCTTAGCACTTGCTCGACAGAAGGCTGCACAATTAGGACTCGTGAAAAACTTGACTTCTGGTACTCCGACTGTTCCACAACCAAGCGCTGTTGTGAATACCACCACAGTCAGCGACTCCAATACTGGTATTGCGGCTGCGGTTGCTGCTGTCACGATACCTGTGCCTCCAGCTCCCACAAGCCGTACGTTGGCTGAACAAGCTGCCGAACGTTTAAATGCTAAACTTGGTTACACTAAACAAACACCAGGCGCTGGTGATGAGGATGGTGCTGGTGCTAACACTAGTTCGGGAAGTGACATGGTTAGAAGATACGAAGAAGAATTAGTTATCAATGACTTCCCACAAAACGTCAGGTGGCGTATCACTGGTCGCGAGATGCTCAATCACCTCAGTGACTATTGTGATGTCGGTGTATCTGTACGCGGAGTGTATATGCCACCTGCAAAAGCTAAGCAACATATACCCGAAGTACAGATGACAGACCACTGTATTTACGCTCCGAGGCTGCTAAGTAAAGACAGTCGCTTTGGCTAAAAAGAATAGCGTATATAAGAGATT]

[+] EMBL CD125487             [TGATGTTACAGATTTGCTTTTAGTTATCAATTATGACTGTCCAAGTCACTATGAGGATTATGTTCATCGTTGTGGGCGTACTGGACGTGCTGGTCGCAAAGGGTTCGCCTATACTTTCCTCACTCCCGACCAGGAGCGCAGTGCTGGAGATGTTGTTCGAGCATTCAAGCAGAGTGGTCAAAAACCACCGGAGGAGCTAATGAATATGTGGAGTGCATACAAGATCAGAATGGAACATGAAGGAAAAAAGGTATATGGTTCTTCAGGCTTCCGTGGTAAAGGATTCATGTTTGATGAAGTGGAAGCTCAGCTGAATAGTGAAAAACGGCGCCTTCAGAAAGCTGCTCTTGGTTTACAAGACTCAGATGACGAAGTTGGTGATGGAAGTGTTGATTGGGACTCAAAGATTGAAGATATGTTGGCCACGAAAACAAAAATCAAAGATGTAcc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD194937             [                                                                                                                                                                                        CCACCGGAGGAACTAATGAATATGTGGAATGCATACAAGATCAGAATGGAACATGAAGGAAAAAAGGTATATGGTTCTTCAGGTTTCCGTGGTAAAGGATTCATGTTTGATGAAGTGGAAGCTCAGCTGAATAGTGAAAAACGGCGCCTTCAGAAAGCTGCTCTTGGTTTACAAGATTCAGATGACGAAGATGGTGATGGAAGTGTTGATTGGGACTCAAAGATTGAAGATATGTTGGCCACGAAAACAAAAATCAAAGATGTATCAAAGGGTAATGCAGCAGAAAGTGTATCTGAAACTGCTGAAGTTAGTGCTCAAGCTGGACAAGCAGTCGTAAACGCAGCC TAGCACTTGCTCGACAGAAGGCTGCACAATTAGGACTCGTGAAAAACTTGACTTCTGGTACTCCGACTGTTCCACAACCAAGCGCTGTTGTGAATACCACCACAGTCAGCGACTCCAATACTGGTATTGCGGCTGCGGTTGCTGCTGTCAC                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD192887             [                                                                                                                                                                                                                                                                                                                                                                                                                                                        AAGATGTATCAAAGGGTAATGCAGCAGAAAGTGTATCTGAAACTGCTGAAGTTAGTGCTCAAGCTGGACAAGCAGTCGTAAACGCAGCCTTAGCACTTGCTCGACAGAAGGCTGCACAATTAGGACTCGTGAAAAACTTGACTTCTGGTACTCCGACTGTTCCACAACCAAGCGCTGTTGTGAATACCACCACAGTCAGCGACTCCAATACTGGTATTGCGGCTGCGGTTGCTGCTGTCACGATACCTGTGCCTCCAGCTCCCACAAGCCGTACGTTGGCTGAACAAGCTGCCGAACGTTTAAATGCTAAACTTGGTTACACTAAACAAACACCAGGCGCTGGTGATGAGGATGGTGCTGGTGCTAACACTAGTTCGGGAAGTGACATGGTTAGAAGATACGAAGAAGAATTAGTTATCAATGACTTCCCACAAAACGTCAGGTGGCGTATCACTGGTCGCGAGATGCTCAATCACCTCAG                                                                                                                                                                      ]
[+] EMBL CD188049             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CAGTCGTAAACGCAGCCTTAGCACTTGCTCGACAGAAGGCTGCACAATTAGGACTCGTGAAAAACTTGACTTCTGGTACTCCGACTGTTCCACAACCAAGCGCTGTTGTGAATACCACCACAGTCAGCGACTCCAATACTGGTATTGCGGCTGCGGTTGCTGCTGTCACGATACCTGTGCCTCCAGCTCCCACAAGCCGTACGTTGGCTGAACAAGCTGCCGAACGTTTAAATGCTAAACTTGGTTACACTAAACAAACACCAGGCGCTGGTGATGAGGATGGTGCTGGTGCTAACACTAGTTCGGGAAGTGACATGGTTAGAAGATACGAAGAAGAATTAGTTATCAATGACTT                                                                                                                                                                                                                            ]
[-] EMBL CD192571             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AAGTGACATGGTTAGAAGATACGAAGAAGAATTAGTTATCAATGACTTCCCACAAAACGTCAGGTGGCGTATCACTGGTCGCGAGATGCTCAATCACCTCAGT                                                                                                                                                                     ]
[+] EMBL AA917191             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AGGTGGTGTATCACTGGTCGCGAGATGCTCAATCACCTCAGTGACTATTGTGATGTCGGTGTATCTGTACGCGGAGTGTATATGCCACCTGCAAAAGCTAAGCAACATATACCCGAAGTACAGATGACAGACCACTGTATTTACGCTCCGAGGCTGCTAAGTAAAGACAGTCGCTTTGGCTAAAAAGAATAGCGTATATAAGAGATT]


>consensus_8631#0 TGATGTTACAGATTTGCTTTTAGTTATCAATTATGACTGTCCAAGTCACTATGAGGATTA TGTTCATCGTTGTGGGCGTACTGGACGTGCTGGTCGCAAAGGGTTCGCCTATACTTTCCT CACTCCCGACCAGGAGCGCAGTGCTGGAGATGTTGTTCGAGCATTCAAGCAGAGTGGTCA AAAACCACCGGAGGAGCTAATGAATATGTGGAGTGCATACAAGATCAGAATGGAACATGA AGGAAAAAAGGTATATGGTTCTTCAGGCTTCCGTGGTAAAGGATTCATGTTTGATGAAGT GGAAGCTCAGCTGAATAGTGAAAAACGGCGCCTTCAGAAAGCTGCTCTTGGTTTACAAGA CTCAGATGACGAAGTTGGTGATGGAAGTGTTGATTGGGACTCAAAGATTGAAGATATGTT GGCCACGAAAACAAAAATCAAAGATGTATCAAAGGGTAATGCAGCAGAAAGTGTATCTGA AACTGCTGAAGTTAGTGCTCAAGCTGGACAAGCAGTCGTAAACGCAGCCTTAGCACTTGC TCGACAGAAGGCTGCACAATTAGGACTCGTGAAAAACTTGACTTCTGGTACTCCGACTGT TCCACAACCAAGCGCTGTTGTGAATACCACCACAGTCAGCGACTCCAATACTGGTATTGC GGCTGCGGTTGCTGCTGTCACGATACCTGTGCCTCCAGCTCCCACAAGCCGTACGTTGGC TGAACAAGCTGCCGAACGTTTAAATGCTAAACTTGGTTACACTAAACAAACACCAGGCGC TGGTGATGAGGATGGTGCTGGTGCTAACACTAGTTCGGGAAGTGACATGGTTAGAAGATA CGAAGAAGAATTAGTTATCAATGACTTCCCACAAAACGTCAGGTGGCGTATCACTGGTCG CGAGATGCTCAATCACCTCAGTGACTATTGTGATGTCGGTGTATCTGTACGCGGAGTGTA TATGCCACCTGCAAAAGCTAAGCAACATATACCCGAAGTACAGATGACAGACCACTGTAT TTACGCTCCGAGGCTGCTAAGTAAAGACAGTCGCTTTGGCTAAAAAGAATAGCGTATATA AGAGATT



consensusID : consensus_8631#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 511
fasta sequence
                              [ACCAAACACCAGGCGCTGTTGATGAGGATGTTGCTGTTCTAAACACTAGTTCGGAAAGTGACATGTTAGCAAGATACGACGACGATTAGTTATCAATGACTTCGCACAAAACGTCAGGTGGCGTATCACTGTTCGCGAGATGCTCAATCACCTCAGTGACTATTGTGATGTCGGTGTATCTGTACGCGGAGTGTATATGCCACCTGCAAAAGCTAAGCAACATATACCCGAAGGTACAGATGACAGACCACTGTATTTATGTATTGAGGCTGTCAATGAAAGACAAGTCGCTTTGGCTAAAAAAGAAATTATGCGTATTATTAAAGAAGAATTAGTTAAATTGCAATCTGGTAATTCAATAAATCGCGGACGATACAAAGTTGTTTAATTTATGATTTAAGTATTTCCACTTGAATTGTTGTACATATTCTGAGAGTAATGACATCTACATTAGCAATCGCGGTTTATTCATATAAATAAATGCTGTCTTGTCATAAAAAAAAAAAAAAAA]

[-] EMBL AI395107             [ACCAAACACCAGGCGCTGTTGATGAGGATGTTGCTGTTCTAAACACTAGTTCGGAAAGTGACATGTTAGCAAGATACGACGACGATTAGTTATCAATGACTTCGCACAAAACGTCAGGTGGCGTATCACTGTTCGCGAGATGCTCAATCACCTCAGTGACTATTGTGATGTCGGTGTATCTGTACGCGGAGTGTATATGCCACCTGCAAAAGCTAAGCAACATATACCCGAAGGTACAGATGACAGACCACTGTATTTATGTATTGAGGCTGTCAATGAAAGACAAGTCGCTTTGGCTAAAAAAGAAATTATGCGTATTATTAAAGAAGAATTAGTTAAATTGCAATCTGGTAATTCAATAAATCGCGGACGATACAAAGTTGTTTAATTTATGATTTAAGTATTTCCACTTGAATTGTTGTACATATTCTGAGAGTAATGACATCTACATTAGCAATCGCGGTTTATTCATATAAATAAATGCTGTCTTGTCATAAAAAAAAAAAAAAAA]


>consensus_8631#1 ACCAAACACCAGGCGCTGTTGATGAGGATGTTGCTGTTCTAAACACTAGTTCGGAAAGTG ACATGTTAGCAAGATACGACGACGATTAGTTATCAATGACTTCGCACAAAACGTCAGGTG GCGTATCACTGTTCGCGAGATGCTCAATCACCTCAGTGACTATTGTGATGTCGGTGTATC TGTACGCGGAGTGTATATGCCACCTGCAAAAGCTAAGCAACATATACCCGAAGGTACAGA TGACAGACCACTGTATTTATGTATTGAGGCTGTCAATGAAAGACAAGTCGCTTTGGCTAA AAAAGAAATTATGCGTATTATTAAAGAAGAATTAGTTAAATTGCAATCTGGTAATTCAAT AAATCGCGGACGATACAAAGTTGTTTAATTTATGATTTAAGTATTTCCACTTGAATTGTT GTACATATTCTGAGAGTAATGACATCTACATTAGCAATCGCGGTTTATTCATATAAATAA ATGCTGTCTTGTCATAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8631#0      TGATGTTACAGATTTGCTTTTAGTTATCAATTATGACTGTCCAAGTCACTATGAGGATTA 60
consensus_8631#1      ------------------------------------------------------------
                                                                                  

consensus_8631#0      TGTTCATCGTTGTGGGCGTACTGGACGTGCTGGTCGCAAAGGGTTCGCCTATACTTTCCT 120
consensus_8631#1      ------------------------------------------------------------
                                                                                  

consensus_8631#0      CACTCCCGACCAGGAGCGCAGTGCTGGAGATGTTGTTCGAGCATTCAAGCAGAGTGGTCA 180
consensus_8631#1      ------------------------------------------------------------
                                                                                  

consensus_8631#0      AAAACCACCGGAGGAGCTAATGAATATGTGGAGTGCATACAAGATCAGAATGGAACATGA 240
consensus_8631#1      ------------------------------------------------------------
                                                                                  

consensus_8631#0      AGGAAAAAAGGTATATGGTTCTTCAGGCTTCCGTGGTAAAGGATTCATGTTTGATGAAGT 300
consensus_8631#1      ------------------------------------------------------------
                                                                                  

consensus_8631#0      GGAAGCTCAGCTGAATAGTGAAAAACGGCGCCTTCAGAAAGCTGCTCTTGGTTTACAAGA 360
consensus_8631#1      ------------------------------------------------------------
                                                                                  

consensus_8631#0      CTCAGATGACGAAGTTGGTGATGGAAGTGTTGATTGGGACTCAAAGATTGAAGATATGTT 420
consensus_8631#1      ------------------------------------------------------------
                                                                                  

consensus_8631#0      GGCCACGAAAACAAAAATCAAAGATGTATCAAAGGGTAATGCAGCAGAAAGTGTATCTGA 480
consensus_8631#1      ------------------------------------------------------------
                                                                                  

consensus_8631#0      AACTGCTGAAGTTAGTGCTCAAGCTGGACAAGCAGTCGTAAACGCAGCCTTAGCACTTGC 540
consensus_8631#1      ------------------------------------------------------------
                                                                                  

consensus_8631#0      TCGACAGAAGGCTGCACAATTAGGACTCGTGAAAAACTTGACTTCTGGTACTCCGACTGT 600
consensus_8631#1      ------------------------------------------------------------
                                                                                  

consensus_8631#0      TCCACAACCAAGCGCTGTTGTGAATACCACCACAGTCAGCGACTCCAATACTGGTATTGC 660
consensus_8631#1      ------------------------------------------------------------
                                                                                  

consensus_8631#0      GGCTGCGGTTGCTGCTGTCACGATACCTGTGCCTCCAGCTCCCACAAGCCGTACGTTGGC 720
consensus_8631#1      ------------------------------------------------------------
                                                                                  

consensus_8631#0      TGAACAAGCTGCCGAACGTTTAAATGCTAAACTTGGTTACACTAAACAAACACCAGGCGC 780
consensus_8631#1      --------------------------------------------ACCAAACACCAGGCGC 16
                                                                  * **************

consensus_8631#0      TGGTGATGAGGATGGTGCTGGTGCTAACACTAGTTCGGGAAGTGACATGGTTAGAAGATA 840
consensus_8631#1      TGTTGATGAGGATGTTGCTGTTCTAAACACTAGTTCGGAAAGTGACATGTTAGCAAGATA 76
                      ** *********** ***** *   ************* ********** *   ******

consensus_8631#0      CGAAGAAGAATTAGTTATCAATGACTTCCCACAAAACGTCAGGTGGCGTATCACTGGTCG 900
consensus_8631#1      CGACGACGA-TTAGTTATCAATGACTTCGCACAAAACGTCAGGTGGCGTATCACTGTTCG 135
                      *** ** ** ****************** *************************** ***

consensus_8631#0      CGAGATGCTCAATCACCTCAGTGACTATTGTGATGTCGGTGTATCTGTACGCGGAGTGTA 960
consensus_8631#1      CGAGATGCTCAATCACCTCAGTGACTATTGTGATGTCGGTGTATCTGTACGCGGAGTGTA 195
                      ************************************************************

consensus_8631#0      TATGCCACCTGCAAAAGCTAAGCAACATATACCCGAAG-TACAGATGACAGACCACTGTA 1019
consensus_8631#1      TATGCCACCTGCAAAAGCTAAGCAACATATACCCGAAGGTACAGATGACAGACCACTGTA 255
                      ************************************** *********************

consensus_8631#0      TTTACGCTCCGAGGCTGCTAAGTAAAGACA-GTCGCTTTGGCTAAAAAGAATA----GCG 1074
consensus_8631#1      TTTATGTATTGAGGCTGTCAATGAAAGACAAGTCGCTTTGGCTAAAAAAGAAATTATGCG 315
                      **** *    *******  **  ******* *****************  * *    ***

consensus_8631#0      TAT-ATAAGAGATT---------------------------------------------- 1087
consensus_8631#1      TATTATTAAAGAAGAATTAGTTAAATTGCAATCTGGTAATTCAATAAATCGCGGACGATA 375
                      *** ** * ***                                                

consensus_8631#0      ------------------------------------------------------------
consensus_8631#1      CAAAGTTGTTTAATTTATGATTTAAGTATTTCCACTTGAATTGTTGTACATATTCTGAGA 435
                                                                                  

consensus_8631#0      ------------------------------------------------------------
consensus_8631#1      GTAATGACATCTACATTAGCAATCGCGGTTTATTCATATAAATAAATGCTGTCTTGTCAT 495
                                                                                  

consensus_8631#0      ----------------
consensus_8631#1      AAAAAAAAAAAAAAAA 511
                                      




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)