These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8631#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1087 fasta sequence [TGATGTTACAGATTTGCTTTTAGTTATCAATTATGACTGTCCAAGTCACTATGAGGATTATGTTCATCGTTGTGGGCGTACTGGACGTGCTGGTCGCAAAGGGTTCGCCTATACTTTCCTCACTCCCGACCAGGAGCGCAGTGCTGGAGATGTTGTTCGAGCATTCAAGCAGAGTGGTCAAAAACCACCGGAGGAGCTAATGAATATGTGGAGTGCATACAAGATCAGAATGGAACATGAAGGAAAAAAGGTATATGGTTCTTCAGGCTTCCGTGGTAAAGGATTCATGTTTGATGAAGTGGAAGCTCAGCTGAATAGTGAAAAACGGCGCCTTCAGAAAGCTGCTCTTGGTTTACAAGACTCAGATGACGAAGTTGGTGATGGAAGTGTTGATTGGGACTCAAAGATTGAAGATATGTTGGCCACGAAAACAAAAATCAAAGATGTATCAAAGGGTAATGCAGCAGAAAGTGTATCTGAAACTGCTGAAGTTAGTGCTCAAGCTGGACAAGCAGTCGTAAACGCAGCCTTAGCACTTGCTCGACAGAAGGCTGCACAATTAGGACTCGTGAAAAACTTGACTTCTGGTACTCCGACTGTTCCACAACCAAGCGCTGTTGTGAATACCACCACAGTCAGCGACTCCAATACTGGTATTGCGGCTGCGGTTGCTGCTGTCACGATACCTGTGCCTCCAGCTCCCACAAGCCGTACGTTGGCTGAACAAGCTGCCGAACGTTTAAATGCTAAACTTGGTTACACTAAACAAACACCAGGCGCTGGTGATGAGGATGGTGCTGGTGCTAACACTAGTTCGGGAAGTGACATGGTTAGAAGATACGAAGAAGAATTAGTTATCAATGACTTCCCACAAAACGTCAGGTGGCGTATCACTGGTCGCGAGATGCTCAATCACCTCAGTGACTATTGTGATGTCGGTGTATCTGTACGCGGAGTGTATATGCCACCTGCAAAAGCTAAGCAACATATACCCGAAGTACAGATGACAGACCACTGTATTTACGCTCCGAGGCTGCTAAGTAAAGACAGTCGCTTTGGCTAAAAAGAATAGCGTATATAAGAGATT] [+] EMBL CD125487 [TGATGTTACAGATTTGCTTTTAGTTATCAATTATGACTGTCCAAGTCACTATGAGGATTATGTTCATCGTTGTGGGCGTACTGGACGTGCTGGTCGCAAAGGGTTCGCCTATACTTTCCTCACTCCCGACCAGGAGCGCAGTGCTGGAGATGTTGTTCGAGCATTCAAGCAGAGTGGTCAAAAACCACCGGAGGAGCTAATGAATATGTGGAGTGCATACAAGATCAGAATGGAACATGAAGGAAAAAAGGTATATGGTTCTTCAGGCTTCCGTGGTAAAGGATTCATGTTTGATGAAGTGGAAGCTCAGCTGAATAGTGAAAAACGGCGCCTTCAGAAAGCTGCTCTTGGTTTACAAGACTCAGATGACGAAGTTGGTGATGGAAGTGTTGATTGGGACTCAAAGATTGAAGATATGTTGGCCACGAAAACAAAAATCAAAGATGTAcc ] [+] EMBL CD194937 [ CCACCGGAGGAACTAATGAATATGTGGAATGCATACAAGATCAGAATGGAACATGAAGGAAAAAAGGTATATGGTTCTTCAGGTTTCCGTGGTAAAGGATTCATGTTTGATGAAGTGGAAGCTCAGCTGAATAGTGAAAAACGGCGCCTTCAGAAAGCTGCTCTTGGTTTACAAGATTCAGATGACGAAGATGGTGATGGAAGTGTTGATTGGGACTCAAAGATTGAAGATATGTTGGCCACGAAAACAAAAATCAAAGATGTATCAAAGGGTAATGCAGCAGAAAGTGTATCTGAAACTGCTGAAGTTAGTGCTCAAGCTGGACAAGCAGTCGTAAACGCAGCC TAGCACTTGCTCGACAGAAGGCTGCACAATTAGGACTCGTGAAAAACTTGACTTCTGGTACTCCGACTGTTCCACAACCAAGCGCTGTTGTGAATACCACCACAGTCAGCGACTCCAATACTGGTATTGCGGCTGCGGTTGCTGCTGTCAC ] [+] EMBL CD192887 [ AAGATGTATCAAAGGGTAATGCAGCAGAAAGTGTATCTGAAACTGCTGAAGTTAGTGCTCAAGCTGGACAAGCAGTCGTAAACGCAGCCTTAGCACTTGCTCGACAGAAGGCTGCACAATTAGGACTCGTGAAAAACTTGACTTCTGGTACTCCGACTGTTCCACAACCAAGCGCTGTTGTGAATACCACCACAGTCAGCGACTCCAATACTGGTATTGCGGCTGCGGTTGCTGCTGTCACGATACCTGTGCCTCCAGCTCCCACAAGCCGTACGTTGGCTGAACAAGCTGCCGAACGTTTAAATGCTAAACTTGGTTACACTAAACAAACACCAGGCGCTGGTGATGAGGATGGTGCTGGTGCTAACACTAGTTCGGGAAGTGACATGGTTAGAAGATACGAAGAAGAATTAGTTATCAATGACTTCCCACAAAACGTCAGGTGGCGTATCACTGGTCGCGAGATGCTCAATCACCTCAG ] [+] EMBL CD188049 [ CAGTCGTAAACGCAGCCTTAGCACTTGCTCGACAGAAGGCTGCACAATTAGGACTCGTGAAAAACTTGACTTCTGGTACTCCGACTGTTCCACAACCAAGCGCTGTTGTGAATACCACCACAGTCAGCGACTCCAATACTGGTATTGCGGCTGCGGTTGCTGCTGTCACGATACCTGTGCCTCCAGCTCCCACAAGCCGTACGTTGGCTGAACAAGCTGCCGAACGTTTAAATGCTAAACTTGGTTACACTAAACAAACACCAGGCGCTGGTGATGAGGATGGTGCTGGTGCTAACACTAGTTCGGGAAGTGACATGGTTAGAAGATACGAAGAAGAATTAGTTATCAATGACTT ] [-] EMBL CD192571 [ AAGTGACATGGTTAGAAGATACGAAGAAGAATTAGTTATCAATGACTTCCCACAAAACGTCAGGTGGCGTATCACTGGTCGCGAGATGCTCAATCACCTCAGT ] [+] EMBL AA917191 [ AGGTGGTGTATCACTGGTCGCGAGATGCTCAATCACCTCAGTGACTATTGTGATGTCGGTGTATCTGTACGCGGAGTGTATATGCCACCTGCAAAAGCTAAGCAACATATACCCGAAGTACAGATGACAGACCACTGTATTTACGCTCCGAGGCTGCTAAGTAAAGACAGTCGCTTTGGCTAAAAAGAATAGCGTATATAAGAGATT] consensusID : consensus_8631#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 511 fasta sequence [ACCAAACACCAGGCGCTGTTGATGAGGATGTTGCTGTTCTAAACACTAGTTCGGAAAGTGACATGTTAGCAAGATACGACGACGATTAGTTATCAATGACTTCGCACAAAACGTCAGGTGGCGTATCACTGTTCGCGAGATGCTCAATCACCTCAGTGACTATTGTGATGTCGGTGTATCTGTACGCGGAGTGTATATGCCACCTGCAAAAGCTAAGCAACATATACCCGAAGGTACAGATGACAGACCACTGTATTTATGTATTGAGGCTGTCAATGAAAGACAAGTCGCTTTGGCTAAAAAAGAAATTATGCGTATTATTAAAGAAGAATTAGTTAAATTGCAATCTGGTAATTCAATAAATCGCGGACGATACAAAGTTGTTTAATTTATGATTTAAGTATTTCCACTTGAATTGTTGTACATATTCTGAGAGTAATGACATCTACATTAGCAATCGCGGTTTATTCATATAAATAAATGCTGTCTTGTCATAAAAAAAAAAAAAAAA] [-] EMBL AI395107 [ACCAAACACCAGGCGCTGTTGATGAGGATGTTGCTGTTCTAAACACTAGTTCGGAAAGTGACATGTTAGCAAGATACGACGACGATTAGTTATCAATGACTTCGCACAAAACGTCAGGTGGCGTATCACTGTTCGCGAGATGCTCAATCACCTCAGTGACTATTGTGATGTCGGTGTATCTGTACGCGGAGTGTATATGCCACCTGCAAAAGCTAAGCAACATATACCCGAAGGTACAGATGACAGACCACTGTATTTATGTATTGAGGCTGTCAATGAAAGACAAGTCGCTTTGGCTAAAAAAGAAATTATGCGTATTATTAAAGAAGAATTAGTTAAATTGCAATCTGGTAATTCAATAAATCGCGGACGATACAAAGTTGTTTAATTTATGATTTAAGTATTTCCACTTGAATTGTTGTACATATTCTGAGAGTAATGACATCTACATTAGCAATCGCGGTTTATTCATATAAATAAATGCTGTCTTGTCATAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8631#0 TGATGTTACAGATTTGCTTTTAGTTATCAATTATGACTGTCCAAGTCACTATGAGGATTA 60 consensus_8631#1 ------------------------------------------------------------ consensus_8631#0 TGTTCATCGTTGTGGGCGTACTGGACGTGCTGGTCGCAAAGGGTTCGCCTATACTTTCCT 120 consensus_8631#1 ------------------------------------------------------------ consensus_8631#0 CACTCCCGACCAGGAGCGCAGTGCTGGAGATGTTGTTCGAGCATTCAAGCAGAGTGGTCA 180 consensus_8631#1 ------------------------------------------------------------ consensus_8631#0 AAAACCACCGGAGGAGCTAATGAATATGTGGAGTGCATACAAGATCAGAATGGAACATGA 240 consensus_8631#1 ------------------------------------------------------------ consensus_8631#0 AGGAAAAAAGGTATATGGTTCTTCAGGCTTCCGTGGTAAAGGATTCATGTTTGATGAAGT 300 consensus_8631#1 ------------------------------------------------------------ consensus_8631#0 GGAAGCTCAGCTGAATAGTGAAAAACGGCGCCTTCAGAAAGCTGCTCTTGGTTTACAAGA 360 consensus_8631#1 ------------------------------------------------------------ consensus_8631#0 CTCAGATGACGAAGTTGGTGATGGAAGTGTTGATTGGGACTCAAAGATTGAAGATATGTT 420 consensus_8631#1 ------------------------------------------------------------ consensus_8631#0 GGCCACGAAAACAAAAATCAAAGATGTATCAAAGGGTAATGCAGCAGAAAGTGTATCTGA 480 consensus_8631#1 ------------------------------------------------------------ consensus_8631#0 AACTGCTGAAGTTAGTGCTCAAGCTGGACAAGCAGTCGTAAACGCAGCCTTAGCACTTGC 540 consensus_8631#1 ------------------------------------------------------------ consensus_8631#0 TCGACAGAAGGCTGCACAATTAGGACTCGTGAAAAACTTGACTTCTGGTACTCCGACTGT 600 consensus_8631#1 ------------------------------------------------------------ consensus_8631#0 TCCACAACCAAGCGCTGTTGTGAATACCACCACAGTCAGCGACTCCAATACTGGTATTGC 660 consensus_8631#1 ------------------------------------------------------------ consensus_8631#0 GGCTGCGGTTGCTGCTGTCACGATACCTGTGCCTCCAGCTCCCACAAGCCGTACGTTGGC 720 consensus_8631#1 ------------------------------------------------------------ consensus_8631#0 TGAACAAGCTGCCGAACGTTTAAATGCTAAACTTGGTTACACTAAACAAACACCAGGCGC 780 consensus_8631#1 --------------------------------------------ACCAAACACCAGGCGC 16 * ************** consensus_8631#0 TGGTGATGAGGATGGTGCTGGTGCTAACACTAGTTCGGGAAGTGACATGGTTAGAAGATA 840 consensus_8631#1 TGTTGATGAGGATGTTGCTGTTCTAAACACTAGTTCGGAAAGTGACATGTTAGCAAGATA 76 ** *********** ***** * ************* ********** * ****** consensus_8631#0 CGAAGAAGAATTAGTTATCAATGACTTCCCACAAAACGTCAGGTGGCGTATCACTGGTCG 900 consensus_8631#1 CGACGACGA-TTAGTTATCAATGACTTCGCACAAAACGTCAGGTGGCGTATCACTGTTCG 135 *** ** ** ****************** *************************** *** consensus_8631#0 CGAGATGCTCAATCACCTCAGTGACTATTGTGATGTCGGTGTATCTGTACGCGGAGTGTA 960 consensus_8631#1 CGAGATGCTCAATCACCTCAGTGACTATTGTGATGTCGGTGTATCTGTACGCGGAGTGTA 195 ************************************************************ consensus_8631#0 TATGCCACCTGCAAAAGCTAAGCAACATATACCCGAAG-TACAGATGACAGACCACTGTA 1019 consensus_8631#1 TATGCCACCTGCAAAAGCTAAGCAACATATACCCGAAGGTACAGATGACAGACCACTGTA 255 ************************************** ********************* consensus_8631#0 TTTACGCTCCGAGGCTGCTAAGTAAAGACA-GTCGCTTTGGCTAAAAAGAATA----GCG 1074 consensus_8631#1 TTTATGTATTGAGGCTGTCAATGAAAGACAAGTCGCTTTGGCTAAAAAAGAAATTATGCG 315 **** * ******* ** ******* ***************** * * *** consensus_8631#0 TAT-ATAAGAGATT---------------------------------------------- 1087 consensus_8631#1 TATTATTAAAGAAGAATTAGTTAAATTGCAATCTGGTAATTCAATAAATCGCGGACGATA 375 *** ** * *** consensus_8631#0 ------------------------------------------------------------ consensus_8631#1 CAAAGTTGTTTAATTTATGATTTAAGTATTTCCACTTGAATTGTTGTACATATTCTGAGA 435 consensus_8631#0 ------------------------------------------------------------ consensus_8631#1 GTAATGACATCTACATTAGCAATCGCGGTTTATTCATATAAATAAATGCTGTCTTGTCAT 495 consensus_8631#0 ---------------- consensus_8631#1 AAAAAAAAAAAAAAAA 511 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||