These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8632#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1140 fasta sequence [TGTCATCACTTCTAACATTAACATACCAAAAGCGTAAATATCGACTTTTTCATCATATTTTTCATCAAAAATCTCTGGCGCCATAAAACCCAATGTACCCAACATAGTTTTTCTTCC-ACTATTACTCACATGA-GTTGCCAAA-CCAAAATCTCCAACCTTCACATTTAAATATTCTTCGTCTGATGCGCCGTACAAAAAGCAGTTATCAGCTTTTAAATCTCTGTGGAGAATAGGAGGTTGGATTTTATGGTGCATATAACGTAAGGCATCGAGAATTTGATGCCACCAACGTGTAATAAGGGGAAATTTAAGGATGCACCTGGCCATCTAAGAAGTTCTTTCTGATTACGCTTTTTAAAGTCCCTTCACCCATCAGTTCCTGGATAATGACAACTCCTTTTTCTTTAATTTGATTGTCCGGATCTTCCATATCAATCCACTCTCTGAAAACATCAAAACATCTGACAATGTGTGGATGATTCATTTTAAACATAATCTCCGTCTCTCTGAACATTGCTTGACGTTTTTCTTTTGTATCAACATGCTCACGTTTGAATTCGCACCATGCAACATTTCTGGCTTCAACGCTATCATATCCACGGTAAACAAATTTATAACCACCCTCACCAATCTTGAGATTATGTTTTATCTAGCGACTACATTTCGATTTTGCTGATACTTTTTGTTTGGCTTCTTGTTCCGCTTGATATTTTTTCAGCATTTCCTCCTCTTTTTTCTTTTCACGTTCCTTTTTCCGTTCTTCTTTTGTTTTCTTGCGGTCAGCGG-AAGTTGCAGAAGCTTGCTGGTCGTTTGGCTGACCGCAATTCACAACACCAATTGATTCCCCAATGACAGGAACCCCAGCAATATTTGGNTGTGATAATAAATCTTCATCATCTGAGTCAGCCTCCACATTTTGCTTCGGGTCAACAATTTTAACTTTTTTTGTAGTTGACCGAGAGCCACTATCCCTTCGAAAAGCTGACCGGTTCAACAAATCAGTATCTTCTGTCTTATGAACGGACGTATCCGTAGCATTACCATCAGCACCAGAGAAAGATTCAGTAGCCTGCTCATTCTTCGAAACCTGCTGGTGTATTGATGCGTTCATTTATCAAGGGACTGAGAATATATATTCAA] [+] EMBL CD068985 [TGTCATCACTTCTAACATTAACATACCAAAAGCGTAAATATCGACTTTTTCATCATATTTTTCATCAAAAATCTCTGGCGCCATAAAACCCAATGTACCCAACATAGTTTTTCTTCC ACTATTACTCACATGA GTTGCCAAA CCAAAATCTCCAACCTTCACATTTAAATATTCTTCGTCTGATGCGCCGTACAAAAAGCAGTTATCAGCTTTTAAATCTCTGTGGAGAATAGGAGGTTGGATTTTATGGTGCATATAACGTAAGGCATCGAGAATTTGATGCCACCAACGTGTAATAAGGGGAAATTTAAGGATGCACCTGGCCATCTAAGAAGTTCTTTCTGATTACGCTTTTTAAAGTCCCTTCACCCATCAGTTCCTGGATAATGACGACTCCTTTTTCTTTAATTTGATTGTCCGGATCTTCCATATCAATCCACTCTCTGAAAACATCAAAACATCTGACAATGTGTGGATGATTCATTTTAAACA ] [+] EMBL CD060449 [ tgTTTCTTCCGACTATTACTCACATGAGGTTGCCAAAGCCAAAATCTCCAACCTTCACATTTAAATATTCTTCGTCTGATGCGCCGTACAAAAAGCAGTTATCAGCTTTTAAATCTCTGTGAAGAATAGGAGGTTGGATTTTATGGTGCATATAACGTAAGGCATCGAGAATTTGATGCCACCAACGTGTAATAAGGGGAAATTTAAGGATGCA CTGGCCATCTAAGAAGTTCTTTCTGATTACGCTTTTTAAAGTCCCTTCACCCATCAGTTCCTGGATAATGACAACTCCTTTTTCT ] [-] EMBL CD201631 [ ttCGC TTTTAAAGTCCCTTCACCCATCAGTTCCTGGATAATGACAACTCCTTTTTCTTCAATTTGATTGTTCGGATCTTCCATATCAATCCACTCTCTGAAAACATCAAAACATCTGACAATGTGTGGATGATTCATTTTCAACATAATCTCCGTCTCTCTGAACATTGCTTGACGTTTTTCTTTTGTATCAACATGCTCACGTTTGAATTCGCACCATGCAACATTTCTGGCTTCAACGCTATCATATCCACGGTAAACAAATTTATAACCACCCTCACCAATCTTGAGATTATGTTTTATCTAGCGACTACATTTCGATTTTGCTGATACTTTTTGTTTGGCTTCTTGTTCCGCTTGATATTTTTTCAGCATTTCCTCCTCTTTTTTCTTTTCACGTTCCTTTTTCCGTTCTT ] [+] EMBL CD070384 [ TCGATTTTGCTGATACTTTTTGTTTGGCTTCTTGTTCCGCTTGATATTTTTTCAGCATTTCCTCCTCTTTTTTCTTTTCACGTTCCTTTTTCCGTTCTTCTTTTGTTTTCTTGCGGTCAGCGG AAGTTGCAGAAGCTTGCTGGTCGTTTGGCTGACCGCAATTCACAACACCAATTGATTCCCCAATGACAGGAACCCCAGCAATATTTGGNTGTGATAATAAATCTTCATCATCTGAGTCAGCCTCCACATTTTGCTTCGGGTCAACAATTTTAACTT ] [-] EMBL CD070466 [ GCGGNAAGTTGCAGAAGCTTGCTGGTCG TTGGCTGACCGCAATTCACAACACCAATTGATTCCNCAATGTCAGGAACCCCAGCAATATTTGGTTGTGATAATAAATCTTCATCATCTGAGTCAGCCTCCACATTTTGCTTCGGGTCAACAATTTTAACTTTTTTTGTAGTTGACCGAGAGCCACTATCCCTTCGAAAAGCTGACCGGTTCAACAAATCAGTATCTTCTGTCTTATGAACGGACGTATCCGTAGCATTACCATCAGCACCAGAGAAAGATTCAGTAGCCTGCTCATTCT ] [-] EMBL CD150663 [ CGTATCCGTAGCATTACCATCAGCTCCAGAGAAAGATTCAGTAGCCTGCTCATTCTTCGAAACCTGCTGGTGTATTGATGCGTTCATTTATCAAGGGACTGAGAATATATATTCAA] consensusID : consensus_8632#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 300 fasta sequence [AATGACAACTCCTTTTTCTTCAATTTGATTGTTCGGATCTTCCATATCAATCCACTCTCTGAAAACATCAAAACATCTGACAATGTGTGGATGATTCATTTTCAACATAATCTCCGTCTCTCTGAACATTGCTTGACGTTTTTCTTTTGTATCAACATGCTCACGTTTGAATTCGCACCATGCAACATTTCTGGCTTCAACGCTATCATATCCACGGTAAACAAATTTATAACCACCCTCACCAATAGGGACTGAGAATATATGATCCAATACAAGTAATGCCTTTGGTCCGATCGTTAA] [+] EMBL CD159936 [AATGACAACTCCTTTTTCTTCAATTTGATTGTTCGGATCTTCCATATCAATCCACTCTCTGAAAACATCAAAACATCTGACAATGTGTGGATGATTCATTTTCAACATAATCTCCGTCTCTCTGAACATTGCTTGACGTTTTTCTTTTGTATCAACATGCTCACGTTTGAATTCGCACCATGCAACATTTCTGGCTTCAACGCTATCATATCCACGGTAAACAAATTTATAACCACCCTCACCAATAGGGACTGAGAATATATGATCCAATACAAGTAATGCCTTTGGTCCGATCGTTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8632#0 TGTCATCACTTCTAACATTAACATACCAAAAGCGTAAATATCGACTTTTTCATCATATTT 60 consensus_8632#1 ------------------------------------------------------------ consensus_8632#0 TTCATCAAAAATCTCTGGCGCCATAAAACCCAATGTACCCAACATAGTTTTTCTTCCACT 120 consensus_8632#1 ------------------------------------------------------------ consensus_8632#0 ATTACTCACATGAGTTGCCAAACCAAAATCTCCAACCTTCACATTTAAATATTCTTCGTC 180 consensus_8632#1 ------------------------------------------------------------ consensus_8632#0 TGATGCGCCGTACAAAAAGCAGTTATCAGCTTTTAAATCTCTGTGGAGAATAGGAGGTTG 240 consensus_8632#1 ------------------------------------------------------------ consensus_8632#0 GATTTTATGGTGCATATAACGTAAGGCATCGAGAATTTGATGCCACCAACGTGTAATAAG 300 consensus_8632#1 ------------------------------------------------------------ consensus_8632#0 GGGAAATTTAAGGATGCACCTGGCCATCTAAGAAGTTCTTTCTGATTACGCTTTTTAAAG 360 consensus_8632#1 ------------------------------------------------------------ consensus_8632#0 TCCCTTCACCCATCAGTTCCTGGATAATGACAACTCCTTTTTCTTTAATTTGATTGTCCG 420 consensus_8632#1 -------------------------AATGACAACTCCTTTTTCTTCAATTTGATTGTTCG 35 ******************** *********** ** consensus_8632#0 GATCTTCCATATCAATCCACTCTCTGAAAACATCAAAACATCTGACAATGTGTGGATGAT 480 consensus_8632#1 GATCTTCCATATCAATCCACTCTCTGAAAACATCAAAACATCTGACAATGTGTGGATGAT 95 ************************************************************ consensus_8632#0 TCATTTTAAACATAATCTCCGTCTCTCTGAACATTGCTTGACGTTTTTCTTTTGTATCAA 540 consensus_8632#1 TCATTTTCAACATAATCTCCGTCTCTCTGAACATTGCTTGACGTTTTTCTTTTGTATCAA 155 ******* **************************************************** consensus_8632#0 CATGCTCACGTTTGAATTCGCACCATGCAACATTTCTGGCTTCAACGCTATCATATCCAC 600 consensus_8632#1 CATGCTCACGTTTGAATTCGCACCATGCAACATTTCTGGCTTCAACGCTATCATATCCAC 215 ************************************************************ consensus_8632#0 GGTAAACAAATTTATAACCACCCTCACCAATCTTGAGATTATGTTTTATCTAGCGACTAC 660 consensus_8632#1 GGTAAACAAATTTATAACCACCCTCACCAATA--GGGACTG----------AGAATATAT 263 ******************************* * ** * ** ** consensus_8632#0 ATTTCGATTTTGCTGATACTTTTTGTTTGGCTTCTTGTTCCGCTTGATATTTTTTCAGCA 720 consensus_8632#1 GATCCAATACAAGTAATGCCTTTGGTCCGATCGTTAA----------------------- 300 * * ** * ** * *** ** * * consensus_8632#0 TTTCCTCCTCTTTTTTCTTTTCACGTTCCTTTTTCCGTTCTTCTTTTGTTTTCTTGCGGT 780 consensus_8632#1 ------------------------------------------------------------ consensus_8632#0 CAGCGGAAGTTGCAGAAGCTTGCTGGTCGTTTGGCTGACCGCAATTCACAACACCAATTG 840 consensus_8632#1 ------------------------------------------------------------ consensus_8632#0 ATTCCCCAATGACAGGAACCCCAGCAATATTTGGNTGTGATAATAAATCTTCATCATCTG 900 consensus_8632#1 ------------------------------------------------------------ consensus_8632#0 AGTCAGCCTCCACATTTTGCTTCGGGTCAACAATTTTAACTTTTTTTGTAGTTGACCGAG 960 consensus_8632#1 ------------------------------------------------------------ consensus_8632#0 AGCCACTATCCCTTCGAAAAGCTGACCGGTTCAACAAATCAGTATCTTCTGTCTTATGAA 1020 consensus_8632#1 ------------------------------------------------------------ consensus_8632#0 CGGACGTATCCGTAGCATTACCATCAGCACCAGAGAAAGATTCAGTAGCCTGCTCATTCT 1080 consensus_8632#1 ------------------------------------------------------------ consensus_8632#0 TCGAAACCTGCTGGTGTATTGATGCGTTCATTTATCAAGGGACTGAGAATATATATTCAA 1140 consensus_8632#1 ------------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||