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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8637#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 680 fasta sequence
[CTGGACCACATGTGATAGGAGGTTCCACAGAACTTACTACGGATGTATCTGGAGGTGATGGATCGTGAGTACTTAAGTAATTAGGTTGCATTAGTTTCGAATTAGATACTTCATCATGATGGTGAGATCCGAGACGCTTTTTTCGTGTACGTTTCTTTTTCTCTTTCACAGATTTATGAGGCACTTGAAAACTATCTGACATAACTTCATTAGGTGTAGTTCCTGATGTTAAATGACATTTAACTTCAGGGGTCGTACAACGTTTGATAGTGTTTAGTTGTTGAGACTTTGGTTCATCCCCAATTGTACTGAAGTGACTTGGATCTGAAAAGGATGGAACACGTTTAAAAGGAATATCAGCATCGGATACAACTTTTAATTCATCATCCGTAGTTCCTAGTACTGAACATTTAGAAGAGCGATCGAGATTAACTGGTTGATCCGAATGGCACACATCTTCAAGCGAAGCCGACTTCGATCGACCAGTGAGTTGTGAAGACAGAGATGAATCGGATAAAGTTCGTGGCCTATGAGGAAAAGTAGTCGGGACTAATTCAGCATCACCATCTGTATCTTCTTCATCTTCAACCATAGCTAAACTATAATCACCATACATATCACGTATTTGTTGTAATATTTCATCAATACTCATTGTCTGATAATATGGATGTCTACGACGA]
[+] EMBL CD093369 [CTGGACCACATGTGATAGGAGGTTCCACAGAACTTACTACGGATGTATCTGGAGGTGATGGATCGTGAGTACTTAAGTAATTAGGTTGCATTAGTTTCGAATTAGATACTTCATCATGATGGTGAGATCCGAGACGCTTTTTTCGTGTACGTTTCTTTTTCTCTTTCACAGATTTATGAGGCACTTGAAAACTATCTGACATAACTTCATTAGGTGTAGTTCCTG ]
[-] EMBL CD161285 [ GAATTAGATACTTCATCATGATGGTGAGATCCGAGACGCTTTTTTCGTGTACGTTTCTTTTTCTCTTTCACAGATTTATGAGGCACTTGAAAACTATCTGACATAACTTCATTAGGTGTAGTTCCTGATGTTAAATGACATTTAACTTCAGGGGTCGTACAACGTTTGATAGTGTTTAGTTGTTGAGACTTTGGTTCATCCCCAATTGTACTGAAGTGACTTGGATCTGAAAAGGATGGAACACGTTTAAAAGGAATATCAGC ]
[-] EMBL AI067510 [ ATNTAACTTCAGGGTTCGTACAACGTTTGATAGTGTTTAGTTGTTGAGACTTTGGTTCATCCCCAATTGTACTGAAGTGACTTGAATCTGAAAAGGATGGAACACGTTTAAAAGGAATATCAGCATCGGATACAACTTTTAATTCATCATCCGTAGTTCCTAGTACTGAACATTTAGAAGAGCGATCGAGATTAACTGGTTGATCCGAATGGCACACATCTTCAAGCGAAGCCGACTTCGATCGACCAGTGAGTTGTGAAGACAGAGATGAATCGGATAAAGTTCGTGGCCTATGAGGAAAAGTAGTCGGGACTAATTCAGCATCACCATCTGTATCTTCTTCATCTTCAACCATAGCTAAACTATAATCACCATACATATCACGTATTTGTTGTAATATTTCATCAATACTCATTGTCTGATAATATGGATGTCTACGACGA]
[-] EMBL AI068337 [ GTACAACGTTTGATAGTGTTTAGTTGTTGAGACTTTGGTTCATCCCCAATTGTACTGAAGTGACTTGGATCTGAAAAGGATGGAACACGTTTAAAAGGAATATCAGCATCGGATACAACTTTTAATTCATCATCCGTAGTTCCTAGTACTGAACATTTAGAAGAGCGATCGAGATTAACTGGTTGATCCGAATGGCACACATCTTCAAGCGAAGCCGACTTCGATCGACCAGTGAGTTGTGAAGACAGAGATGAATCGGATAAAGTTCGTGGCCTATGAGGAAAAGTAGTCGGGACTAATTCAGCATCACCATCTGTATCTTCTTCATCTTCAACCATAGCTAAACTATAATCACCATACATATCACGTATTTGTTGTAATATTTCATCAATACTCATTGTCTGATAATATGGATGTCTACGACGA]
[-] EMBL AI068359 [ GTACAACGTTTGATAGTGTTTAGTTGTTGAGACTTTGGTTCATCCCCAATTGTACTGAAGTGACTTGGATCTGAAAAGGATGGAACACGTTTAAAAGGAATATCAGCATCGGATACAACTTTTAATTCATCATCCGTAGTTCCTAGTACTGAACATTTAGAAGAGCGATCGAGATTAACTGGTTGATCCGAATGGCACACATCTTCAAGCGAAGCCGACTTCGATCGACCAGTGAGTTGTGAAGACAGAGATGAATCGGATAAAGTTCGTGGCCTATGAGGAAAAGTAGTCGGGACTAATTCAGCATCACCATCTGTATCTTCTTCATCTTCAACCATAGCTAAACTATAATCACCATACATATCACGTATTTGTTGTAATATTTCATCAATACTCATTGTCTGATAATATGGATGTCTACGACGA]
consensusID : consensus_8637#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 453 fasta sequence
[GTTGTGAAGACAGAGATGAATCGGATAAAGTTCGTGGCCTATGAGGAAAAGTAGTCGGGACTAATTCTGCATCACCATCTGTATCTTCTTCATCTTCAACCATAGCTAAACTATAATCACCATACATATCACGTATTTGTTGTAATATTTCATCAATACTCATTGTCTATATTTAACATACAACAATTGAGGATATGAAAAAAGACAAAATGAGAATATTTCTACAACAAATATAAACAATATATCTCACTTGAGTAATAGTACATTATCGATAAGATTTTGTTCATTGTTGGAAAATTCCAACAAATCAATTTAGTTCAAATATTTGTTTCATGGTACATTGTAGAAGTTCACAATCTGATCGTCACTCTCCTATGTTTGAACTTAATTGTACAGTTGTGCTGCCAGTGAATTGAATGGAAATATCAAACACTTTGCAGGATTAGTTAAATT]
[+] EMBL CD167755 [GTTGTGAAGACAGAGATGAATCGGATAAAGTTCGTGGCCTATGAGGAAAAGTAGTCGGGACTAATTCTGCATCACCATCTGTATCTTCTTCATCTTCAACCATAGCTAAACTATAATCACCATACATATCACGTATTTGTTGTAATATTTCATCAATACTCATTGTCTATATTTAACATACAACAATTGAGGATATGAAAAAAGACAAAATGAGAATATTTCTACAACAAATATAAACAATATATCTCACTTGAGTAATAGTACATTATCGATAAGATTTTGTTCATTGTTGGAAAATTCCAACAAATCAATTTAGTTCAAATATTTGTTTCATGGTACATTGTAGAAGTTCACAATCTGATCGTCACTCTCCTATGTTTGAACTTAATTGTACAGTTGTGCTGCCAGTGAATTGAATGGAAATATCAAACACTTTGCAGGATTAGTTAAATT]
consensusID : consensus_8637#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 334 fasta sequence
[CTTGGGAGAAGAGTCTGTTGTTCCACTGCAGTGCATGTTCTTGGGCCAAGTTTCTGTTTTAATGTCAGTGTATAGGTAATAGTTCGTTCAATTTTACTAGAAGTTTCTAACTGATTTAGACATTCTGAGGGACTAGACCACTTGAATACTGGCCATGGAGATTGAATCATTCCAAATGTACCACGATGTTCACTGAATCGCGAGAAGAATTCCGAATCCGTAAAAATACATCGAAATAAAGCGTTAACATTCAGTGGAATGTCAGTGTTTGCATACACTCTACCTGGATGATCGTGGCCTGGACCACATGTGATAGGAGGTTCCACAGAACTTA]
[+] EMBL CD126276 [CTTGGGAGAAGAGTCTGTTGTTCCACTGCAGTGCATGTTCTTGGGCCAAGTTTCTGTTTTAATGTCAGTGTATAGGTAATAGTTCGTTCAATTTTACTAGAAGTTTCTAACTGATTTAGACATTCTGAGGGACTAGACCACTTGAATACTGGCCATGGAGATTGAATCATTCCAAATGTACCACGATGTTCACTGAATCGCGAGAAGAATTCCGAATCCGTAAAAATACATCGAAATAAAGCGTTAACATTCAGTGGAATGTCAGTGTTTGCATACACTCTACCTGGATGATCGTGGCCTGGACCACATGTGATAGGAGGTTCCACAGAACTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8637#0 CTGGACCACATGTGATAGGAGGTTCCACAGAACTTACTACGGATGTATCTGGAGGTGATG 60
consensus_8637#1 ------------------------------------------------------------
consensus_8637#2 ------------------------------------------------------------
consensus_8637#0 GATCGTGAGTACTTAAGTAATTAGGTTGCATTAGTTTCGAATTAGATACTTCATC-ATGA 119
consensus_8637#1 ----------------GTTGTGAAGACAGAGATGAATCGGATAAAGTTCGTGGCCTATGA 44
consensus_8637#2 ------------------------------------------------------------
consensus_8637#0 TGGTGAG-ATCCGAGACGCTTTTTTCGTGTACGTTTCTTTTTCTCTTTCACAGATTTATG 178
consensus_8637#1 GGAAAAGTAGTCGGGACTAATTCTGCATCACCATCTGTATCTTCTTCATCTTCAACCAT- 103
consensus_8637#2 --CTTGGGAGAAGAGTCTGTTGTTCCACTGCAGT--GCATGTTCTTGGGCCAAGTTTCTG 56
* * * * * * * * * * * * *
consensus_8637#0 AGGCACTTGAAAACTATCTGACATAACTT-CATTAGGTGTAGTTCCTGATGTTAAATGAC 237
consensus_8637#1 AGCTAAACTATAATCACCATACATATCACGTATTTGTTGTAATATTTCAT---CAATACT 160
consensus_8637#2 TTTTAATGTCAGTGTATAGGTAATAGTTCGT-TCAATTTTACTAGAAGTTTCTAACTGAT 115
* * *** * * ** * * * *
consensus_8637#0 ATTTAACTTCAGGGGTCGTACAACGTTTGATAGTGTTTAGTTGTTGAGACTTTGGTTCAT 297
consensus_8637#1 CATTGTCTATATTTAACATACAACAATTGAGGATATGAAAAAAGACAAAATGAGAATATT 220
consensus_8637#2 TTAGACATTCTGAGGGACTAGACCACTTGAATAC---TGGCCATGGAGATT--GAATCAT 170
* ** * * **** * * * * * *
consensus_8637#0 CCCCAAT-TGTACTGAAGTGACTTGGATCTGAAAAG-GATGGAACACGTTTAAAAGGAAT 355
consensus_8637#1 TCTACAA-CAAATATAAACAATATATCTCACTTGAGTAATAGTACATTATCGATAAGATT 279
consensus_8637#2 TCCAAATGTACCACGATGTTCACTGAATCGCGAGAAGAATTCCGAATCCGTAAAAATACA 230
* * * * ** * ** * * * *
consensus_8637#0 ATCAGCATCGGATACAACTTTTAATTCATCATCCGTAGTTCCTAGTACTGAACATTTAGA 415
consensus_8637#1 TTGTTCATTGTTGGAAAATTCCAACAAATCAATT-TAGTTCA-AATATTTGTTTCATGGT 337
consensus_8637#2 TCGAAATAAAGCGTTAACATTCAGTGGAATGTCAGTGTTTGC--ATACACTCTACCTGGA 288
** * * * * ** ** * *
consensus_8637#0 AGAGCGATCGAGATTAACTGGTTGATCCGAATGGCACACATCTTCAAGCGAAGCCGACTT 475
consensus_8637#1 ACATTG-TAGAAGTTCAC-----AATCTGATCGTCACTCTCCTATGTTTGAA------CT 385
consensus_8637#2 TGATCG--TGGCCTGGACCA---CATGTGATAGGAGGTTCCACAGAACTTA--------- 334
* * * * ** ** ** * *
consensus_8637#0 CGATCGACCAGTGAGTTGTGAAGACAGAGATGAATCGGATAAAGTTCGTGGCCTATGAGG 535
consensus_8637#1 TAATTGTAC----AGTTGTGCTGCCAG---TGAATTGAATGGAAATATCAAACACTTTGC 438
consensus_8637#2 ------------------------------------------------------------
consensus_8637#0 AAAAGTAGTCGGGACTAATTCAGCATCACCATCTGTATCTTCTTCATCTTCAACCATAGC 595
consensus_8637#1 AGGATTAGTTAAATT--------------------------------------------- 453
consensus_8637#2 ------------------------------------------------------------
consensus_8637#0 TAAACTATAATCACCATACATATCACGTATTTGTTGTAATATTTCATCAATACTCATTGT 655
consensus_8637#1 ------------------------------------------------------------
consensus_8637#2 ------------------------------------------------------------
consensus_8637#0 CTGATAATATGGATGTCTACGACGA 680
consensus_8637#1 -------------------------
consensus_8637#2 -------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||