These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8638#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 834 fasta sequence [GCCAAGATTCGGCACGAGGACCATTAACTGTAACGATACAGGGAATATGGCTGGAAGTAGGTGGCCGGCTGCAATGGCTCCTACTAACAGAGTCGGTAATGCTTCTCGAACAAAACAAGTTATTTTCGAACCTACGTTTGCCAAAATGGAAAAAGAGAATTACGCTTTAACTCAGCGACTAAAGGAAGCTTTCTATAAGGTTGAGAAGCGATATCCTGGTTTCAGTAAAGATTTCATGATTGGCTTGCTTCAACGGATGGGAGTCGATAGTGAAATTGACGTGACTGAAACGTGTTTACGGATTGCTGCTCTTCAAGAATGTGATAATTCAAGGACGTCAAGAAATCCTAGAGTTTTGGAGTTGGAACTTACGGCTAAGACACTAAAAACTATTCTTAGTAGCATACCTGATGAAATTATAGACCGCAGAGCATTTATAGAAGTCATCAAAGGTATAGCAGATGCAATAAAGATGTTGTTAGCTGCTGTGGGTGCGTTTTATGACACGTTACCACCGGGAACACAAAAGAAATGTCTCGAAGATCAAAAACGAAAATTTATCACCTACTGTCGTAAATTCAGTGATACTTTGAAGCAGTACTTTAGGAACAACGATCAAACTGTGGTTTTTAGCAGCGCAAACCTACTGGTTAGCCAAACC-ACCTAATTTTGTTTG-AGTTCATGATGTAAATTGAAGAAAATGG-AAAATACCACCATT-TTAATATTCTGGGCTAATATCGAACTATATTT-TTTATTAATGCGATTTATGAAT-ATAGAAAAATAATTTTACTTTGGCGAAACATTATATTAAACGGTTACTTTTTTTAACATTAA] [+] EMBL CD079870 [GCCAAGATTCGGCACGAGGACCATTAACTGTAACGATACAGGGAATATGGCTGGAAGTAGGTGGCCGGCTGCAATGGCTCCTACTAACAGAGTCGGTAATGCTTCTCGAACAAAACAAGTTATTTTCGAACCTACGTTTGCCAAAATGGAAAAAGAGAATTACGCTTTAACTCAGCGACTAAAGGAAGCTTTCTATAAGGTTGAGAAGCGATATCCTGGTTTCAGTAAAGATTTCATGATTGGCTTGCTTCAACGGATGGGAGTCGATAGTGAAATTGACGTGACTGAAACGTGTTTACGGATTGCTGCTCTTCAAGAATGTGATAATTCAAGGACGTCAAGAAATCCTAGAGTTTTGGAGTTGGAACTTACGGCTAAGACACTAAAAACTATTCTTAGTAGCATACCTGATGAAATTATAGACCGCAGAGCATTTATAGAAGTCATCAAAGGTATAGCAGATGCAATAAAGATGTTGTTAGCTGCTGTGGGTGCGTTTTATGACACGTTACCACCGGGAACACAAAAGAAATGTCTCGAAGATCAAAAACGAAAATTTATCACCTACTGTCGTAAATTCAGTGATACTTTGAAGCAGTACTTTAGGAACAACGATCAAACTGTGGTTTTTAGCAGCGCAAACCTACTGGTTAGCCAAACC ACCTAATTTTGTTTG AGTTCATGATGTAAATTGAAGAAAATGG AAAATACCACCATT TTAATATTCTGGGCTAATATCGAACTATATTT TTTATTAATGCGATTTATGAAT ATAGAAAAATAATTTTACTTTGGCGAAACATTATATTAAACGGTTACTTTTTTTAACATTAA] [+] EMBL CD131448 [ CTGGAAGTAGGTGGCCGGCTGCAATGGCTCCTACTAACAGAGTCGGTAATGCTTCTCGAACAAAACAAGTTATTTTCGAACCTACGTTTGCCAAAATGGAAAAAGAGAATTACGCTTTAACTCAGCGACTAAAGGAAGCTTTCTATAAGGTTGAGAAGCGATATCCTGGTTTCAGTAAAGATTTCATGATTGGCTTGCTTCAACGGATGGGAGTCGATAGTGAAATTGACGTGACTGAAACGTGTTTACGGATTGCTGCTCTTCAAGAATGTGATAATTCAAGGACGTCAAGAAATCCTAGAGTTTTGGAGTTGGAACTTACGGCTAAGACACTAAAAACTATTCTTAGTAGCATACCTGATGAAATTATAGACCGCAGAGCATTTATAGAAGTCATCAAAGGTATAGCAGATGCAATAAAGATGTTGTTAGCTGCTGTGGGTGCGTTTTATGACACGTTACCACCGGGAACACANAAGAAATGT ] [-] EMBL CD060511 [ TTTTCGTACCTACGTTTGCCAAAATGGAAAAAGAGAATTACGCTTTAACTCAGCGACTAAAGGAAGCTTTCTATAAGGTTGAGAAGCGATATCCTGGTTTCAGTAAAGATTTCATGATTGGCTTGCTTCAACGGATGGGAGTCGATAGTGAAATTGACGTGACTGAAACGTGTTTACGGATTGCTGCTCTTCAAGAATGTGATAATTCAAGGACGTCAAGAAATCCTAGAG ] [-] EMBL CD068667 [ GACACTATAAACTATTCTTAGTAGCATACCTGATGAGATTATAGACCGCAGAGCATTTATAGAAGTCATCAAAGGTATAGCAGATGCAATAAAGATGTTGTTAGCTGCTGTGGGTGCGTTTTATGACACGTTACCACCGGGAACACAAAAGAAATGTCTCGAAGATCAAAAACGAAAATTTATCACCTACTGTCGTAAATTCAGTGATACTTTGAAGCAGTACTTTAGGAACAACGATCAAACTGTGGTTTTTAGCAGCGCAAACCTACTGGTTAGCCAAACCAACCTAATTTTGTTTGTAGTTCATGATGTAAATTGAAGAAAATGGAAAAATACAACCATTGTTAATATTCTGTGCTTATATCGAACTATATTTCTTTATTAATGTGATTTATGAATAATAGAAAAATtagtctttt ] consensusID : consensus_8638#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 521 fasta sequence [CCGGCTGCAATGGCTCCTACTAACAGAGTCGGTAATGCTTCTCGAACAAAACAAGTTATTTTCGAACCTACGTTTGCCAAAATGGAAAAAGAGAATTACGCTTTAACTCAGCGACTAAAGGAAGCTTTCTATAAGGTAAGTTTGAATTAAGATACAAAGTCGTGCATATATTAGGTTGAGAAGCGATATCCTGGTTTCAGTAAAGATTTCATGATTGGCTTGCTTCAACGGATGGGAGTCGATAGTGAAATTGACGTGACTGAAACGTGTTTACGGATTGCTGCTCTTCAAGAATGTGATAATTCAAGGACGTCAAGAAATCCTAGAGTTTTGGAGTTGGAACTTACGGCTAAGACACTAAAAACTATTCTTAGTAGCATACCTGATGAAATTATAGGCCGCAGAGCATTTATAGAAGTCATCAAAGGTATAGCAGATGCAATAAAGATGTTGTTAGCTGCTGTGGGTGCGTTTTATGACACGTTACCACCGGGAACACANAAGAAATGTCTCGAAGATCN] [+] EMBL CD131396 [CCGGCTGCAATGGCTCCTACTAACAGAGTCGGTAATGCTTCTCGAACAAAACAAGTTATTTTCGAACCTACGTTTGCCAAAATGGAAAAAGAGAATTACGCTTTAACTCAGCGACTAAAGGAAGCTTTCTATAAGGTAAGTTTGAATTAAGATACAAAGTCGTGCATATATTAGGTTGAGAAGCGATATCCTGGTTTCAGTAAAGATTTCATGATTGGCTTGCTTCAACGGATGGGAGTCGATAGTGAAATTGACGTGACTGAAACGTGTTTACGGATTGCTGCTCTTCAAGAATGTGATAATTCAAGGACGTCAAGAAATCCTAGAGTTTTGGAGTTGGAACTTACGGCTAAGACACTAAAAACTATTCTTAGTAGCATACCTGATGAAATTATAGGCCGCAGAGCATTTATAGAAGTCATCAAAGGTATAGCAGATGCAATAAAGATGTTGTTAGCTGCTGTGGGTGCGTTTTATGACACGTTACCACCGGGAACACANAAGAAATGTCTCGAAGATCN] [+] EMBL CD131897 [ TGGCTTGCTTCAACGGATGGGAGTCGATAGTGAAATTGACGTGACTGAAACGTGTTTACGGATTGCTGCTCTTCAAGAATGTGATAATTCAAGGACGTCAAGAAATGCTAGAGTTCTGGAGTTG ] [-] EMBL CD125504 [ ATAATTCAAGGACGTCAAGAAATCCTAGAGTTTTGGAGTTGGAACTTACGGCTAAGACACTAAAAACTATTCTTAGTAGCATACCTGATGAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8638#0 GCCAAGATTCGGCACGAGGACCATTAACTGTAACGATACAGGGAATATGGCTGGAAGTAG 60 consensus_8638#1 ------------------------------------------------------------ consensus_8638#0 GTGGCCGGCTGCAATGGCTCCTACTAACAGAGTCGGTAATGCTTCTCGAACAAAACAAGT 120 consensus_8638#1 ----CCGGCTGCAATGGCTCCTACTAACAGAGTCGGTAATGCTTCTCGAACAAAACAAGT 56 ******************************************************** consensus_8638#0 TATTTTCGAACCTACGTTTGCCAAAATGGAAAAAGAGAATTACGCTTTAACTCAGCGACT 180 consensus_8638#1 TATTTTCGAACCTACGTTTGCCAAAATGGAAAAAGAGAATTACGCTTTAACTCAGCGACT 116 ************************************************************ consensus_8638#0 AAAGGAAGCTTTCTATAAGGT--------------------------------------- 201 consensus_8638#1 AAAGGAAGCTTTCTATAAGGTAAGTTTGAATTAAGATACAAAGTCGTGCATATATTAGGT 176 ********************* consensus_8638#0 TGAGAAGCGATATCCTGGTTTCAGTAAAGATTTCATGATTGGCTTGCTTCAACGGATGGG 261 consensus_8638#1 TGAGAAGCGATATCCTGGTTTCAGTAAAGATTTCATGATTGGCTTGCTTCAACGGATGGG 236 ************************************************************ consensus_8638#0 AGTCGATAGTGAAATTGACGTGACTGAAACGTGTTTACGGATTGCTGCTCTTCAAGAATG 321 consensus_8638#1 AGTCGATAGTGAAATTGACGTGACTGAAACGTGTTTACGGATTGCTGCTCTTCAAGAATG 296 ************************************************************ consensus_8638#0 TGATAATTCAAGGACGTCAAGAAATCCTAGAGTTTTGGAGTTGGAACTTACGGCTAAGAC 381 consensus_8638#1 TGATAATTCAAGGACGTCAAGAAATCCTAGAGTTTTGGAGTTGGAACTTACGGCTAAGAC 356 ************************************************************ consensus_8638#0 ACTAAAAACTATTCTTAGTAGCATACCTGATGAAATTATAGACCGCAGAGCATTTATAGA 441 consensus_8638#1 ACTAAAAACTATTCTTAGTAGCATACCTGATGAAATTATAGGCCGCAGAGCATTTATAGA 416 ***************************************** ****************** consensus_8638#0 AGTCATCAAAGGTATAGCAGATGCAATAAAGATGTTGTTAGCTGCTGTGGGTGCGTTTTA 501 consensus_8638#1 AGTCATCAAAGGTATAGCAGATGCAATAAAGATGTTGTTAGCTGCTGTGGGTGCGTTTTA 476 ************************************************************ consensus_8638#0 TGACACGTTACCACCGGGAACACAAAAGAAATGTCTCGAAGATCAAAAACGAAAATTTAT 561 consensus_8638#1 TGACACGTTACCACCGGGAACACANAAGAAATGTCTCGAAGATCN--------------- 521 ************************ ******************* consensus_8638#0 CACCTACTGTCGTAAATTCAGTGATACTTTGAAGCAGTACTTTAGGAACAACGATCAAAC 621 consensus_8638#1 ------------------------------------------------------------ consensus_8638#0 TGTGGTTTTTAGCAGCGCAAACCTACTGGTTAGCCAAACCACCTAATTTTGTTTGAGTTC 681 consensus_8638#1 ------------------------------------------------------------ consensus_8638#0 ATGATGTAAATTGAAGAAAATGGAAAATACCACCATTTTAATATTCTGGGCTAATATCGA 741 consensus_8638#1 ------------------------------------------------------------ consensus_8638#0 ACTATATTTTTTATTAATGCGATTTATGAATATAGAAAAATAATTTTACTTTGGCGAAAC 801 consensus_8638#1 ------------------------------------------------------------ consensus_8638#0 ATTATATTAAACGGTTACTTTTTTTAACATTAA 834 consensus_8638#1 --------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||