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Schistosoma mansoni
cluster # 8638 cluster # 8638       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8638#0 length = 834 sequences # 4  
consensus_8638#1 length = 521 sequences # 3  

consensusID : consensus_8638#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 834
fasta sequence
                              [GCCAAGATTCGGCACGAGGACCATTAACTGTAACGATACAGGGAATATGGCTGGAAGTAGGTGGCCGGCTGCAATGGCTCCTACTAACAGAGTCGGTAATGCTTCTCGAACAAAACAAGTTATTTTCGAACCTACGTTTGCCAAAATGGAAAAAGAGAATTACGCTTTAACTCAGCGACTAAAGGAAGCTTTCTATAAGGTTGAGAAGCGATATCCTGGTTTCAGTAAAGATTTCATGATTGGCTTGCTTCAACGGATGGGAGTCGATAGTGAAATTGACGTGACTGAAACGTGTTTACGGATTGCTGCTCTTCAAGAATGTGATAATTCAAGGACGTCAAGAAATCCTAGAGTTTTGGAGTTGGAACTTACGGCTAAGACACTAAAAACTATTCTTAGTAGCATACCTGATGAAATTATAGACCGCAGAGCATTTATAGAAGTCATCAAAGGTATAGCAGATGCAATAAAGATGTTGTTAGCTGCTGTGGGTGCGTTTTATGACACGTTACCACCGGGAACACAAAAGAAATGTCTCGAAGATCAAAAACGAAAATTTATCACCTACTGTCGTAAATTCAGTGATACTTTGAAGCAGTACTTTAGGAACAACGATCAAACTGTGGTTTTTAGCAGCGCAAACCTACTGGTTAGCCAAACC-ACCTAATTTTGTTTG-AGTTCATGATGTAAATTGAAGAAAATGG-AAAATACCACCATT-TTAATATTCTGGGCTAATATCGAACTATATTT-TTTATTAATGCGATTTATGAAT-ATAGAAAAATAATTTTACTTTGGCGAAACATTATATTAAACGGTTACTTTTTTTAACATTAA]

[+] EMBL CD079870             [GCCAAGATTCGGCACGAGGACCATTAACTGTAACGATACAGGGAATATGGCTGGAAGTAGGTGGCCGGCTGCAATGGCTCCTACTAACAGAGTCGGTAATGCTTCTCGAACAAAACAAGTTATTTTCGAACCTACGTTTGCCAAAATGGAAAAAGAGAATTACGCTTTAACTCAGCGACTAAAGGAAGCTTTCTATAAGGTTGAGAAGCGATATCCTGGTTTCAGTAAAGATTTCATGATTGGCTTGCTTCAACGGATGGGAGTCGATAGTGAAATTGACGTGACTGAAACGTGTTTACGGATTGCTGCTCTTCAAGAATGTGATAATTCAAGGACGTCAAGAAATCCTAGAGTTTTGGAGTTGGAACTTACGGCTAAGACACTAAAAACTATTCTTAGTAGCATACCTGATGAAATTATAGACCGCAGAGCATTTATAGAAGTCATCAAAGGTATAGCAGATGCAATAAAGATGTTGTTAGCTGCTGTGGGTGCGTTTTATGACACGTTACCACCGGGAACACAAAAGAAATGTCTCGAAGATCAAAAACGAAAATTTATCACCTACTGTCGTAAATTCAGTGATACTTTGAAGCAGTACTTTAGGAACAACGATCAAACTGTGGTTTTTAGCAGCGCAAACCTACTGGTTAGCCAAACC ACCTAATTTTGTTTG AGTTCATGATGTAAATTGAAGAAAATGG AAAATACCACCATT TTAATATTCTGGGCTAATATCGAACTATATTT TTTATTAATGCGATTTATGAAT ATAGAAAAATAATTTTACTTTGGCGAAACATTATATTAAACGGTTACTTTTTTTAACATTAA]
[+] EMBL CD131448             [                                                  CTGGAAGTAGGTGGCCGGCTGCAATGGCTCCTACTAACAGAGTCGGTAATGCTTCTCGAACAAAACAAGTTATTTTCGAACCTACGTTTGCCAAAATGGAAAAAGAGAATTACGCTTTAACTCAGCGACTAAAGGAAGCTTTCTATAAGGTTGAGAAGCGATATCCTGGTTTCAGTAAAGATTTCATGATTGGCTTGCTTCAACGGATGGGAGTCGATAGTGAAATTGACGTGACTGAAACGTGTTTACGGATTGCTGCTCTTCAAGAATGTGATAATTCAAGGACGTCAAGAAATCCTAGAGTTTTGGAGTTGGAACTTACGGCTAAGACACTAAAAACTATTCTTAGTAGCATACCTGATGAAATTATAGACCGCAGAGCATTTATAGAAGTCATCAAAGGTATAGCAGATGCAATAAAGATGTTGTTAGCTGCTGTGGGTGCGTTTTATGACACGTTACCACCGGGAACACANAAGAAATGT                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD060511             [                                                                                                                          TTTTCGTACCTACGTTTGCCAAAATGGAAAAAGAGAATTACGCTTTAACTCAGCGACTAAAGGAAGCTTTCTATAAGGTTGAGAAGCGATATCCTGGTTTCAGTAAAGATTTCATGATTGGCTTGCTTCAACGGATGGGAGTCGATAGTGAAATTGACGTGACTGAAACGTGTTTACGGATTGCTGCTCTTCAAGAATGTGATAATTCAAGGACGTCAAGAAATCCTAGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD068667             [                                                                                                                                                                                                                                                                                                                                                                                          GACACTATAAACTATTCTTAGTAGCATACCTGATGAGATTATAGACCGCAGAGCATTTATAGAAGTCATCAAAGGTATAGCAGATGCAATAAAGATGTTGTTAGCTGCTGTGGGTGCGTTTTATGACACGTTACCACCGGGAACACAAAAGAAATGTCTCGAAGATCAAAAACGAAAATTTATCACCTACTGTCGTAAATTCAGTGATACTTTGAAGCAGTACTTTAGGAACAACGATCAAACTGTGGTTTTTAGCAGCGCAAACCTACTGGTTAGCCAAACCAACCTAATTTTGTTTGTAGTTCATGATGTAAATTGAAGAAAATGGAAAAATACAACCATTGTTAATATTCTGTGCTTATATCGAACTATATTTCTTTATTAATGTGATTTATGAATAATAGAAAAATtagtctttt                                           ]


>consensus_8638#0 GCCAAGATTCGGCACGAGGACCATTAACTGTAACGATACAGGGAATATGGCTGGAAGTAG GTGGCCGGCTGCAATGGCTCCTACTAACAGAGTCGGTAATGCTTCTCGAACAAAACAAGT TATTTTCGAACCTACGTTTGCCAAAATGGAAAAAGAGAATTACGCTTTAACTCAGCGACT AAAGGAAGCTTTCTATAAGGTTGAGAAGCGATATCCTGGTTTCAGTAAAGATTTCATGAT TGGCTTGCTTCAACGGATGGGAGTCGATAGTGAAATTGACGTGACTGAAACGTGTTTACG GATTGCTGCTCTTCAAGAATGTGATAATTCAAGGACGTCAAGAAATCCTAGAGTTTTGGA GTTGGAACTTACGGCTAAGACACTAAAAACTATTCTTAGTAGCATACCTGATGAAATTAT AGACCGCAGAGCATTTATAGAAGTCATCAAAGGTATAGCAGATGCAATAAAGATGTTGTT AGCTGCTGTGGGTGCGTTTTATGACACGTTACCACCGGGAACACAAAAGAAATGTCTCGA AGATCAAAAACGAAAATTTATCACCTACTGTCGTAAATTCAGTGATACTTTGAAGCAGTA CTTTAGGAACAACGATCAAACTGTGGTTTTTAGCAGCGCAAACCTACTGGTTAGCCAAAC CACCTAATTTTGTTTGAGTTCATGATGTAAATTGAAGAAAATGGAAAATACCACCATTTT AATATTCTGGGCTAATATCGAACTATATTTTTTATTAATGCGATTTATGAATATAGAAAA ATAATTTTACTTTGGCGAAACATTATATTAAACGGTTACTTTTTTTAACATTAA



consensusID : consensus_8638#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 521
fasta sequence
                              [CCGGCTGCAATGGCTCCTACTAACAGAGTCGGTAATGCTTCTCGAACAAAACAAGTTATTTTCGAACCTACGTTTGCCAAAATGGAAAAAGAGAATTACGCTTTAACTCAGCGACTAAAGGAAGCTTTCTATAAGGTAAGTTTGAATTAAGATACAAAGTCGTGCATATATTAGGTTGAGAAGCGATATCCTGGTTTCAGTAAAGATTTCATGATTGGCTTGCTTCAACGGATGGGAGTCGATAGTGAAATTGACGTGACTGAAACGTGTTTACGGATTGCTGCTCTTCAAGAATGTGATAATTCAAGGACGTCAAGAAATCCTAGAGTTTTGGAGTTGGAACTTACGGCTAAGACACTAAAAACTATTCTTAGTAGCATACCTGATGAAATTATAGGCCGCAGAGCATTTATAGAAGTCATCAAAGGTATAGCAGATGCAATAAAGATGTTGTTAGCTGCTGTGGGTGCGTTTTATGACACGTTACCACCGGGAACACANAAGAAATGTCTCGAAGATCN]

[+] EMBL CD131396             [CCGGCTGCAATGGCTCCTACTAACAGAGTCGGTAATGCTTCTCGAACAAAACAAGTTATTTTCGAACCTACGTTTGCCAAAATGGAAAAAGAGAATTACGCTTTAACTCAGCGACTAAAGGAAGCTTTCTATAAGGTAAGTTTGAATTAAGATACAAAGTCGTGCATATATTAGGTTGAGAAGCGATATCCTGGTTTCAGTAAAGATTTCATGATTGGCTTGCTTCAACGGATGGGAGTCGATAGTGAAATTGACGTGACTGAAACGTGTTTACGGATTGCTGCTCTTCAAGAATGTGATAATTCAAGGACGTCAAGAAATCCTAGAGTTTTGGAGTTGGAACTTACGGCTAAGACACTAAAAACTATTCTTAGTAGCATACCTGATGAAATTATAGGCCGCAGAGCATTTATAGAAGTCATCAAAGGTATAGCAGATGCAATAAAGATGTTGTTAGCTGCTGTGGGTGCGTTTTATGACACGTTACCACCGGGAACACANAAGAAATGTCTCGAAGATCN]
[+] EMBL CD131897             [                                                                                                                                                                                                                       TGGCTTGCTTCAACGGATGGGAGTCGATAGTGAAATTGACGTGACTGAAACGTGTTTACGGATTGCTGCTCTTCAAGAATGTGATAATTCAAGGACGTCAAGAAATGCTAGAGTTCTGGAGTTG                                                                                                                                                                                      ]
[-] EMBL CD125504             [                                                                                                                                                                                                                                                                                                          ATAATTCAAGGACGTCAAGAAATCCTAGAGTTTTGGAGTTGGAACTTACGGCTAAGACACTAAAAACTATTCTTAGTAGCATACCTGATGAAA                                                                                                                                  ]


>consensus_8638#1 CCGGCTGCAATGGCTCCTACTAACAGAGTCGGTAATGCTTCTCGAACAAAACAAGTTATT TTCGAACCTACGTTTGCCAAAATGGAAAAAGAGAATTACGCTTTAACTCAGCGACTAAAG GAAGCTTTCTATAAGGTAAGTTTGAATTAAGATACAAAGTCGTGCATATATTAGGTTGAG AAGCGATATCCTGGTTTCAGTAAAGATTTCATGATTGGCTTGCTTCAACGGATGGGAGTC GATAGTGAAATTGACGTGACTGAAACGTGTTTACGGATTGCTGCTCTTCAAGAATGTGAT AATTCAAGGACGTCAAGAAATCCTAGAGTTTTGGAGTTGGAACTTACGGCTAAGACACTA AAAACTATTCTTAGTAGCATACCTGATGAAATTATAGGCCGCAGAGCATTTATAGAAGTC ATCAAAGGTATAGCAGATGCAATAAAGATGTTGTTAGCTGCTGTGGGTGCGTTTTATGAC ACGTTACCACCGGGAACACANAAGAAATGTCTCGAAGATCN



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8638#0      GCCAAGATTCGGCACGAGGACCATTAACTGTAACGATACAGGGAATATGGCTGGAAGTAG 60
consensus_8638#1      ------------------------------------------------------------
                                                                                  

consensus_8638#0      GTGGCCGGCTGCAATGGCTCCTACTAACAGAGTCGGTAATGCTTCTCGAACAAAACAAGT 120
consensus_8638#1      ----CCGGCTGCAATGGCTCCTACTAACAGAGTCGGTAATGCTTCTCGAACAAAACAAGT 56
                          ********************************************************

consensus_8638#0      TATTTTCGAACCTACGTTTGCCAAAATGGAAAAAGAGAATTACGCTTTAACTCAGCGACT 180
consensus_8638#1      TATTTTCGAACCTACGTTTGCCAAAATGGAAAAAGAGAATTACGCTTTAACTCAGCGACT 116
                      ************************************************************

consensus_8638#0      AAAGGAAGCTTTCTATAAGGT--------------------------------------- 201
consensus_8638#1      AAAGGAAGCTTTCTATAAGGTAAGTTTGAATTAAGATACAAAGTCGTGCATATATTAGGT 176
                      *********************                                       

consensus_8638#0      TGAGAAGCGATATCCTGGTTTCAGTAAAGATTTCATGATTGGCTTGCTTCAACGGATGGG 261
consensus_8638#1      TGAGAAGCGATATCCTGGTTTCAGTAAAGATTTCATGATTGGCTTGCTTCAACGGATGGG 236
                      ************************************************************

consensus_8638#0      AGTCGATAGTGAAATTGACGTGACTGAAACGTGTTTACGGATTGCTGCTCTTCAAGAATG 321
consensus_8638#1      AGTCGATAGTGAAATTGACGTGACTGAAACGTGTTTACGGATTGCTGCTCTTCAAGAATG 296
                      ************************************************************

consensus_8638#0      TGATAATTCAAGGACGTCAAGAAATCCTAGAGTTTTGGAGTTGGAACTTACGGCTAAGAC 381
consensus_8638#1      TGATAATTCAAGGACGTCAAGAAATCCTAGAGTTTTGGAGTTGGAACTTACGGCTAAGAC 356
                      ************************************************************

consensus_8638#0      ACTAAAAACTATTCTTAGTAGCATACCTGATGAAATTATAGACCGCAGAGCATTTATAGA 441
consensus_8638#1      ACTAAAAACTATTCTTAGTAGCATACCTGATGAAATTATAGGCCGCAGAGCATTTATAGA 416
                      ***************************************** ******************

consensus_8638#0      AGTCATCAAAGGTATAGCAGATGCAATAAAGATGTTGTTAGCTGCTGTGGGTGCGTTTTA 501
consensus_8638#1      AGTCATCAAAGGTATAGCAGATGCAATAAAGATGTTGTTAGCTGCTGTGGGTGCGTTTTA 476
                      ************************************************************

consensus_8638#0      TGACACGTTACCACCGGGAACACAAAAGAAATGTCTCGAAGATCAAAAACGAAAATTTAT 561
consensus_8638#1      TGACACGTTACCACCGGGAACACANAAGAAATGTCTCGAAGATCN--------------- 521
                      ************************ *******************                

consensus_8638#0      CACCTACTGTCGTAAATTCAGTGATACTTTGAAGCAGTACTTTAGGAACAACGATCAAAC 621
consensus_8638#1      ------------------------------------------------------------
                                                                                  

consensus_8638#0      TGTGGTTTTTAGCAGCGCAAACCTACTGGTTAGCCAAACCACCTAATTTTGTTTGAGTTC 681
consensus_8638#1      ------------------------------------------------------------
                                                                                  

consensus_8638#0      ATGATGTAAATTGAAGAAAATGGAAAATACCACCATTTTAATATTCTGGGCTAATATCGA 741
consensus_8638#1      ------------------------------------------------------------
                                                                                  

consensus_8638#0      ACTATATTTTTTATTAATGCGATTTATGAATATAGAAAAATAATTTTACTTTGGCGAAAC 801
consensus_8638#1      ------------------------------------------------------------
                                                                                  

consensus_8638#0      ATTATATTAAACGGTTACTTTTTTTAACATTAA 834
consensus_8638#1      ---------------------------------
                                                       




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)