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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8641#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 911 fasta sequence
[CACCAGTTTTACGATTGGTTCGCTACCTTGTCTGGAGTATCACACTTGAGATACTATTATGTAGAATACTTTTCATCGCACTAGATTGTAAAGGGTTAGGAAATTGTTATCAAAGGAGTCTGGAGAATGCGAAATCTTAGGATATTTGGAGTACTATAATGCTGATGGAAAGTTTGGAACCGATTTTACGCCCCGCCGATTATATAGGTTCGTTTCTTGTTTCTGGTAAAGATCATCATGAAAGAGCTGAAATAGTACGTCAAAAGTTGGAAGCGGCTCGCAAATATACCCACAGTAAA-CCAATTATC-TTGCTGATATCTTTAAGTGGAGTTAAGGTTTGTCATGAAAATAAGGAGCGCGTTTATATGGCTCATGCACTTCGACGGATTTCGTATGCCACCTGTGACCCAGAAAATCTTCAGTTTGCCTTCCTTGCCAGGGAACCAAAAGCACAACCGAATGTCCAATATTGTCATGCTTTCGTCACTGTAACACCTGAGGCAG-CCGAGGAACTGAATACCATAATGGGAGAGGTTTTTCGCTTAGCGTATG-CCACCCNCGGTCTTAATACAGTAACTAACAATCCTGTTTTGTTTCACCACTTTGGTCAACATATACC-AGTTTGTCAGGTTCAGCAGACTCCCATAACTGTCACATGTTCTGTTTCTGCTAACCAAAATAACTCAATGAGCACCCAATCTCCAAGTCAAGCTGTTTACGCTGTCAACTTAAATCCGACCAATCAAATATCCATGACTAGCAGACTTCTTCCGCCTTTACCAGAAGCTGATCATTGTGCAGCAAGTAACCAGACACCTGTTTCTGTCCAGTCTGAAGTGAACGATACTCATCAAGTGAATTTCGTGCTGTCAGTGACAGACAGAGAGGAAGTAAACCTCACAAGCATATAC]
[+] EMBL CD200567 [ CAGTTTTACGATTGGTTCGCTACCTTGTCTGGAGTATCACACTTGAGATACTATTATGTAGAATACTTTTCATCGCACTAGATTGTAAAGGGTTAGGAAATTGTTATCAAAGGAGTCTGGAGAATGCGAAATCTTAGGATATTTGGAGTACTATAATGCTGATGGAAAGTTTGGAACCGATTTTACGCCCCGCCGATTATATAGGTTCGTTTCTTGTTTCTGGTAAAGATCATCATGAAAGAGCTGAAATAGTACGTCAAAAGTTGGAAGCGGCTCGCAAATATACCCACAGTAAA CCAATTATC TTGCTGATATCTTTAAGTGGAGTTAAGGTTTGCCATGAAAATAAGGAGCGCGTTTATATGGCTCATGCACTTCGACGGATTTCGTATGCCACCTGTGACCCAGAAAATCTTCAGTTTGCCTTCCTTGCCAGGGAACCAAAAGCACAACCGAATGTCCAATATTGTCATGCTTTCGTCACTGTAACACCTGAGGCAG CCGAGGAACTGAATACCATAATGGGAGAGGTTTTTCGCTTAGCGTATG CCACCCNCG ]
[+] EMBL CD186187 [cactctggggACGATTGGTTCGCTACCTTGTCTGGAGTATCACACTTGAGATACTATTATGCAGAATACTTTTCATCGCATTAGATTGTAAAGGGTTAGGAAATTGTTATCAAAGGAGTCTGGAGAATGCGAAATCTTAAGATATTTGGAGTACTATAATGCTGATGGAAAGTTTGGAACCGATTTTACGCCCCGCCGATTATATAGGTTCGTTTCTTGTTTCTGGTAAAGATCATCATGAAAGAGCTGAAATAGTGCGTCAAAAGTTGGAAGCGGCTCGCAAATATACCCACAGTAAA CCAATTATC TTGCTGATATCTTTAAGTGGAGTTAAGGTTTGTCATGAAAATAAGGAGCGCGTTTATATGGCTCATGCACTTCGACGGATTTCGTATG ]
[-] EMBL CD200765 [ CAAAAGTTGGAAGCGGCTCGCAAATATACCCACAGTAAACCCAATTATCTTTGCTGATATCTTTAAGTGGAGTTAAGGTTTGTCATGAAAATAAGGAGCGCGTTTATATGGCTCATGCACTTCGACGGATTTCGTATGCCACCTGTGACCCAGAAAATTTTCAGTTTGCCTTCCTTGCCAGGGAACCAAAAGCACAACCGAATGTCCAATAATGTCATGCTTTCGTCACTGTAACACCTGAGGCAG CCGAGGAACTGAATACCATAATGGGAGAGGTTTTTTGCT ]
[-] EMBL CD060588 [ AGCACACCCGAATGTCCAATATTGTCATGCTTTCGTCACTGTAACACCTGA GCAGTCCGAGGAACTGAATACCATAATGGGAGAGGTTTTTCGCTTAGCGTATGCCCAGCAAC GTCTTAATACAGTAACTAACAATCCTGTTTTGTTTCACCACTTTGGTCAACATATACC AGTTTGTCAGGTTCAGCAGACTCCCATAACTGTCACATGTTCTGTTTCTGCTAACCAAAATAACTCAATGAGCACCCAATCTCCAAGTCAAGCTGTTTACGCTGTCAACTTAAATCCGACCAATCAAATATCCATGACTAGCAGACTTCTTCCGCCTTTACCAGAAGCTGATCATTGTGCAGCAAGTAACCAGACACCTGTTTCTGTCCAGTCTGAAGTGAACGATACTCATCAAGTGAATTTCGTGCTGTCAGTGACAGACAGAGAGGAAGTAAACCTCACAAGCATATAC]
[+] EMBL CD127504 [ TAACAATCCTGTTTTGTTTCACCATGGTGGTCAACATATACCGTGGTTGTCAGGTTCAGCAAACTCCCATAACTGTCACATGTTCTGTTTCTGCTAACCAAAATAACTCAATGAGCACAAAATCTCCAAGTCAAGCTGTTTACGCTGTCAACTTAAATCCGACCAATCAAATATCCATGACTAGCAAACTTCTTCCGCCTTTACCAGAAGC ]
consensusID : consensus_8641#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 282 fasta sequence
[ACAGTACACCAATTATCTTGCTGATATCTTTAAGTGGAGTTAAGGTTTGTCATGAAAATAAGGAGGTGAGGTTTATGATAAATTTCAACACGTATCTTATTTACAATGTAACTAGCGTAAACAGAGAGTAGTTTCTTAACCTTTTTTGACACTTTGTAATTACATTCAATGTTTTCTACTCCAATGCTTTTGGAAGCGCGTATATATGGCTCATGCACTTCGACGGATTTCGTATGCCACCTGTGACCCAGAAAATCTTCAGTTTGCCTTCCTTGCCAGGGA]
[+] EMBL CD060637 [ACAGTACACCAATTATCTTGCTGATATCTTTAAGTGGAGTTAAGGTTTGTCATGAAAATAAGGAGGTGAGGTTTATGATAAATTTCAACACGTATCTTATTTACAATGTAACTAGCGTAAACAGAGAGTAGTTTCTTAACCTTTTTTGACACTTTGTAATTACATTCAATGTTTTCTACTCCAATGCTTTTGGAAGCGCGTATATATGGCTCATGCACTTCGACGGATTTCGTATGCCACCTGTGACCCAGAAAATCTTCAGTTTGCCTTCCTTGCCAGGGA]
consensusID : consensus_8641#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 181 fasta sequence
[TAGGATATTGGGAGTACTATAATGCTGATGGAAAGTTTGAAACCGATCATTGTGCAGCAAGTAACCAGACACCTGTTTCTGTCCAGTCTGAAGTGAACAATACTCCATCAAGTGAATTTTGTGCTGTCAGTGACAGACAGAGAGGAAGTAAACCTCACAAGCATAAACATCACANACATCA]
[+] EMBL CD183166 [TAGGATATTGGGAGTACTATAATGCTGATGGAAAGTTTGAAACCGATCATTGTGCAGCAAGTAACCAGACACCTGTTTCTGTCCAGTCTGAAGTGAACAATACTCCATCAAGTGAATTTTGTGCTGTCAGTGACAGACAGAGAGGAAGTAAACCTCACAAGCATAAACATCACANACATCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8641#0 CACCAGTTTTACGATTGGTTCGCTACCTTGTCTGGAGTATCACACTTGAGATACTATTAT 60
consensus_8641#2 ------------------------------------------------------------
consensus_8641#1 ------------------------------------------------------------
consensus_8641#0 GTAGAATACTTTTCATCGCACTAGATTGTAAAGGGTTAGGAAATTGTTATCAAAGGAGTC 120
consensus_8641#2 ------------------------------------------------------------
consensus_8641#1 ------------------------------------------------------------
consensus_8641#0 TGGAGAATGCGAAATCTTAGGATATTTGGAGTACTATAATGCTGATGGAAAGTTTGGAAC 180
consensus_8641#2 ------------------------------------------------------------
consensus_8641#1 ------------------------------------------------------------
consensus_8641#0 CGATTTTACGCCCCGCCGATTATATAGGTTCGTTTCTTGTTTCTGGTAAAGATCATCATG 240
consensus_8641#2 ------------------------------------------------------------
consensus_8641#1 ------------------------------------------------------------
consensus_8641#0 AAAGAGCTGAAATAGTACGTCAAAAGTTGGAAGCGGCTCGCAAATATACCCACAGTAAAC 300
consensus_8641#2 ------------------------------------------------------------
consensus_8641#1 ------------------------------------------------------------
consensus_8641#0 CAATTATCTTGCTGATATCTTTAAGTGGAGTTAAGGTTTGTCATGAAAATAAGGAGCGCG 360
consensus_8641#2 ------------------------------------------------------------
consensus_8641#1 ------------------------------------------------------------
consensus_8641#0 TTTATATGGCTCATGCACTTCGACGGATTTCGTATGCCACCTGTGACCCAGAAAATCTTC 420
consensus_8641#2 ------------------------------------------------------------
consensus_8641#1 ------------------------------------------------------------
consensus_8641#0 AGTTTGCCTTCCTTGCCAGGGAACCAAAAGCACAACCGAATGTCCAATATTGTCATGCTT 480
consensus_8641#2 ------------------------------------------------------------
consensus_8641#1 ------------------------------------------------------------
consensus_8641#0 TCGTCACTGTAACACCTGAGGCAGCCGAGGAACTGAATACCATAATGGGAGAGGTTTTTC 540
consensus_8641#2 ------------------------------------------------------------
consensus_8641#1 ------------------------------------------------------------
consensus_8641#0 GCTTAGCGTATGCCACCCNCGGTCTTAATACAGTAACTAACAATCCTGTTTTGTTTCACC 600
consensus_8641#2 ------------------------------------------------------------
consensus_8641#1 ------------------------------------------------------------
consensus_8641#0 ACTTTGGTCAACATATACCAGTTTGTCAGGTTCAGCAGACTCCCATAACTGTCACATGTT 660
consensus_8641#2 ------------------------------------------------------------
consensus_8641#1 ------------------------------------------------------------
consensus_8641#0 CTGTTTCTGCTAACCAAAATAACTCAATGAGCACCCAATCTCCAAGTCAAGCTGTTTACG 720
consensus_8641#2 ------------------------------------------------------------
consensus_8641#1 -----------------------------ACAGTACACCAATTATCTTGCTGATATCTTT 31
consensus_8641#0 CTGTCAACTTAAATCCGACCAATCAAATATCCATGACTAGCAGACTTCTTCCGCCTTTAC 780
consensus_8641#2 ----------------------TAGGATATT-GGGAGTACTATAATGCTGATGGAAA-GT 36
consensus_8641#1 AAGTGGAGTTAAGGTTTGTCATGAAAATAAGGAGGTGAGGTTTATGATAAATTTCAACAC 91
*** * *
consensus_8641#0 CAGAAGCTGATCATTGTGCAGCAAG--TAACCAGACACCTGTTTCT-GTCCAGTCTGAAG 837
consensus_8641#2 TTGAAACCGATCATTGTGCAGCAAG--TAACCAGACACCTGTTTCT-GTCCAGTCTGAAG 93
consensus_8641#1 GT-ATCTTATTTACAATGTAACTAGCGTAAACAGAGAGTAGTTTCTTAACCTTTTTTGAC 150
* * * ** * * ** *** **** * ****** ** * * *
consensus_8641#0 TGAACGATACTC-ATCAAGTGAATTTCGTGCTGTCAGTGACAGACAGAGAGGAAGTAAAC 896
consensus_8641#2 TGAACAATACTCCATCAAGTGAATTTTGTGCTGTCAGTGACAGACAGAGAGGAAGTAAAC 153
consensus_8641#1 ACTTTGTAATTACATTCAATGTTTTCTACTCCAATGCTTTTGGA-AGCGCGTATATATGG 209
* * ** * ** ** * * ** ** * * * **
consensus_8641#0 CTCACAAGCATATAC--------------------------------------------- 911
consensus_8641#2 CTCACAAGCATAAAC--ATCACANACATCA------------------------------ 181
consensus_8641#1 CTCATGCACTTCGACGGATTTCGTATGCCACCTGTGACCCAGAAAATCTTCAGTTTGCCT 269
**** * * **
consensus_8641#0 -------------
consensus_8641#2 -------------
consensus_8641#1 TCCTTGCCAGGGA 282
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||