These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8643#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 566 fasta sequence [TCCGAAAAACGATAATTAGACTTAACTATAGCAACCCTAAAGAAAAGCGTGATGATGAATTCGACGATGCATCACCAACTATTATGCTGCGTGGGATTCCCACTTCCCTTGATCATCGTGATATTCGTGACGCTCTTGATGATGCTCGCGTGAGTTACTTAGACGTTCGTGTAATAAACTCACTTCCTTGTTTTGAAAACTTTTGAAATGGATATACCCACCCCAACGATTATGCTGCGTGGTTTGACTTCGTCAACAACGGAA-CGTGATGTTCGACGTACACTTGATAGTGAACACGCAAATTACACTGACGTACGTCTTGTTCGTGACAAGAAAACTGGTAGATGGATTGGATTTGTTGATTTTGTATCAGCAAATGATGCTAAACAGTTTATGCGAGATTGCCAGGGAGAAATTGAGATCCGAAAAACGATAATTAGACTTAACTATAGCAACCCTAAAGAAAAGCGTGATGATGAATTCGACGATGCATCACCAACTATTATGCTGCGTGGGATTCCCACTTCCCTTGATCATCGTGATATACGTGACGCTCTTGATGATGC] [+] EMBL CD113194 [TCCGAAAAACGATAATTAGACTTAACTATAGCAACCCTAAAGAAAAGCGTGATGATGAATTCGACGATGCATCACCAACTATTATGCTGCGTGGGATTCCCACTTCCCTTGATCATCGTGATATTCGTGACGCTCTTGATGATGCTCGCGTGAGTTACTTAGACGTTCGTGTAATAAACTCACTTCCTTGTTTTGAAAACTTTTGAAATGGATATACCCACCCCAACGATTATGCTGCGTGGTTTGACTTCGTCAACAACGGAA CGTGATGCTCGACGTACACTTGATAGTGAACACGCAAATTACACTGACGTACGTCTTGTTCGTGACAAGAAAACTGGTAGATGGATTGGATTTGTTGATTTTGTATCAGCAAATGTTGCTAAACAGTTTATGCGAGATTGCCAGGGAGAAATTGAGATCCGAAAAACGATAATTAGACTTAACTATAGCAACCCTAAAGAAAAGCGTGATGATGAATTCGATGATGCATCACCA ] [+] EMBL CD113217 [TCCGAAAAACGATAATTAGACTTAACTATAGCAACCCTAAAGAAAAGCGTGATGATGAATTCGACGATGCATCACCAACTATTATGCTGCGTGGGATTCCCACTTCCCTTGATCATCGTGATATTCGTGACGCTCTTGATGATGCTCGCGTGAGTTACTTAGACGTTCGTGTAATAAACTCACTTCCTTGTTTTGAAAACTTTTGAAATGGATATACCCACCCCAACGATTATGCTGCGTGGTTTGACTTCGTCAACAACGGAA CGTGATGTTCGACGTACACTTGATAGTGAGCACGCAAATTACACTGACGTACGTCTTGTTCGTGACAAGAAAACTGGTAGATGGATTGGATTTGTTGATTTTGTATCAGCAAATGATGCTAAACAGTTTATGCGAGATTGCCAGGGAGAAATTGAGATCCGAAAAACGATAATTAGACTTAACTATAGCAACCCTAAAGAAAAGCGTGATGATGAATTCGACGATGCATCACC ] [+] EMBL CD113238 [TCCGAAAAACGATAATTAGACTTAACTATAGCAACCCTAAAGAAAAGCGTGATGATGAATTCGACGATGCATCACCAACTATTATGCTGCGTGGGATTCCCACTTCCCTTGATCATCGTGATATTCGTGACGCTCTTGATGATGCTCGCGTGGGTTACTTAGACGTTCGTGTAATAAACTCACTTCCTTGTTTTGAAAACTTTTGAAATGGATATACCCACCCCAACGATTATGCTGCGTGGTTTGACTTCGTCAACAACGGAA CGTGATGTTCGACGTACACTTGATAGTGAACACGCAAATTACACTGACGTACGTCTTGTTCGTGACAAGAAAACTGGTAGATGGATTGGATTTGTTGACTTTGTATCAGCAAATGATGCTAAACAGTTTATGCGAGATTGCCAGGGAGAAATTGAGATCCGAAAAACGATAATTAGACTTAACTATAGCAACCCTAAAGAAAAGCGTGATGATGAATTCGACGATGCATCACC ] [+] EMBL CD060613 [ TTTGACTTCGTCACCAACGGAAGCGTGATGTTCGACGTACACTTGATAGTGAACACGCAAATTACACTGACGTACGTCTTGTACGTGACAAGACAACTGGTAGATGGATTGGATTTGTTGATTTTGTATCAGCAAATGATGCTAAACAGTTTATGCGAGATTGCCAGGGAGAAATTGAGATCCGAAACACGATCATTAGACTTAACTATAGCAACCCTAAAGAAACGCGTGATGATGAATTCGACGATGCATCACCAACTATTATGCTGCGTGGGATTCCCACTTCCCTTGATCATCGTGATATACGTGACGCTCTTGATGATGC] [+] EMBL CD170021 [ gttgntAAAAC CAAA TACACTGACGTACGTCTTGTTCGTGACAAGAAAACTGGTAGATGGATTGGATTTGTTGATTTTGTATCAGCAAATGATGCTAAACAGTTTATGCGAGATTGCCAGGGAGAAATTGAGATCCGAAAAACGATAATTAGACTTAACTATAGCAACCCTAAAGAAAAGCGTGATGATGAATTCGACGATGCATCACCAACTATTATGCTGCGTGGGATTCCCACTT ] consensusID : consensus_8643#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence [CACTTCCCTTGATCATCGTGATATTCGTGACGCTCTTGATGATGCTCGCGTGAGTTACTTAAACGTTCGTGTAATCAAGGATAAAACAACGGGTATGTATTTATTGCCTTCCCCGCTTCAGGAAATTATTGGGATATAATAGTTGCTTGTTAATTATAAACTTGCTTTCATCTTTACGTTACTAATAATTGATTAAATTATTCGTATTCCCGAGTGGAAATTAATATTCTGAGGATACGTCTTTTTCTGGATTGTCTGTGTATCGTTATATGCAACAACTTTTTTAACTGTCATCAACTCATTGAACTTCCTAACGGTACTTTACAAGTTCTTCATTATATCTAGTCCTCTAAAAATCCCTATTGTATGAACGTATGTCTGACCACTAGATTGATTTTCTTAGTATCTTGTTTGATCTCCATTCTTATAGTAGTTCTAGCTATTGGTCTTAGCTAATCATAACTCTGCTT] [+] EMBL CD190045 [CACTTCCCTTGATCATCGTGATATTCGTGACGCTCTTGATGATGCTCGCGTGAGTTACTTAAACGTTCGTGTAATCAAGGATAAAACAACGGGTATGTATTTATTGCCTTCCCCGCTTCAGGAAATTATTGGGATATAATAGTTGCTTGTTAATTATAAACTTGCTTTCATCTTTACGTTACTAATAATTGATTAAATTATTCGTATTCCCGAGTGGAAATTAATATTCTGAGGATACGTCTTTTTCTGGATTGTCTGTGTATCGTTATATGCAACAACTTTTTTAACTGTCATCAACTCATTGAACTTCCTAACGGTACTTTACAAGTTCTTCATTATATCTAGTCCTCTAAAAATCCCTATTGTATGAACGTATGTCTGACCACTAGATTGATTTTCTTAGTATCTTGTTTGATCTCCATTCTTATAGTAGTTCTAGCTATTGGTCTTAGCTAATCATAACTCTGCTT] consensusID : consensus_8643#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence [CGGTTAGTGAAAACCGCTTCAGTTTAGTCTTGTGAAGTACAGACCTGTTGTTCTGCCAAAACAGTTGGTGATGCTCCTATACCTTACTGGTTAACTTCTTCCAGTACCCCGATTTTCGTATTCAGCAATCAAGTTCTTCAAATTTTCGAACATTGACGCTGAAAAATTGATACTACTCATAAGATCTCAACCTGTTCTCCTTACTGCACAAAAGCCCTTGTAATAAACTCACTTCCTTGTTTTGAAAACTTTTGAAATGGATATACCCACCCCAACGATTATGCTGCGTGGTTTGACTTCGTCAACAACGGAACGTGATGTTCGACGTACACTTGATAGTGAACACGCAAATTACACTGACGTACGTCTTGTTCGTGACAAGAAAACTGGTAGATGGATTGGATTTGTTGATTTTGTATCAGCAAATGATGCTAAACAGTTTA] [+] EMBL CD133083 [CGGTTAGTGAAAACCGCTTCAGTTTAGTCTTGTGAAGTACAGACCTGTTGTTCTGCCAAAACAGTTGGTGATGCTCCTATACCTTACTGGTTAACTTCTTCCAGTACCCCGATTTTCGTATTCAGCAATCAAGTTCTTCAAATTTTCGAACATTGACGCTGAAAAATTGATACTACTCATAAGATCTCAACCTGTTCTCCTTACTGCACAAAAGCCCTTGTAATAAACTCACTTCCTTGTTTTGAAAACTTTTGAAATGGATATACCCACCCCAACGATTATGCTGCGTGGTTTGACTTCGTCAACAACGGAACGTGATGTTCGACGTACACTTGATAGTGAACACGCAAATTACACTGACGTACGTCTTGTTCGTGACAAGAAAACTGGTAGATGGATTGGATTTGTTGATTTTGTATCAGCAAATGATGCTAAACAGTTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8643#0 ---------------------------------------------------TCCGAAAAA 9 consensus_8643#2 CGGTTAGTGAAAACCGCTTCAGTTTAGTCTTGTGAAGTACAGACCTGTTGTTCTGCCAAA 60 consensus_8643#1 -------------------------------------CACTTCCCTTGATCATCGTGATA 23 * * * consensus_8643#0 CGATAATTAGACTTAACTATAGCAACCCTAAAGAAAAGCGTGATGATGAATTCGACGATG 69 consensus_8643#2 --ACAGTTGGTGATGCTCCTA--TACCTTACTGGTTAACTTCTTCCAGTACCCCGATTTT 116 consensus_8643#1 TTCGTGACGCTCTTGATGATGCTCGCGTGAGTTACTTAAACGTTCGTGTAATCAAGGATA 83 * * * * * * * * * consensus_8643#0 CATCACCAACTATTATGCTGCGTGGGATTCC---CACTTCCCTTGATCA--TCGTGATAT 124 consensus_8643#2 CGTATTCAGCAATCAAGTTCTTCAAATTTTCGAACATTGACGCTGAAAAATTGATACTAC 176 consensus_8643#1 AAACAACGGGTAT-GTATTTATTGCCTTCCC---CGCTTCAGGAAATTATTGGGATATAA 139 * ** * * * * * * * ** consensus_8643#0 TCGTGACGCTCTTGATGATGCTCGCGTGAGTTACTTAGACGTTCGTGTAATAAACTCACT 184 consensus_8643#2 TCATAA-GATCTCAACC-TGTTCTCCTTA-CTGCACAAAAGCCCTTGTAATAAACTCACT 233 consensus_8643#1 TAGTTG-CTTGTTAATTATAAACTTGCTTTCATCTTTACGTTACTAATAATTGATTAAAT 198 * * * * * * * * * **** * * * * consensus_8643#0 TCCTTGTTTTGAAAACTTTTGAAATGGATATACCCACCCCAACGATTATGCTGCGTGGTT 244 consensus_8643#2 TCCTTGTTTTGAAAACTTTTGAAATGGATATACCCACCCCAACGATTATGCTGCGTGGTT 293 consensus_8643#1 TATTCGTATTCCCGAGT--GGAAATTAATATTCTGAGGATACGTCTTTTTCTGGATTGTC 256 * * ** ** * * ***** **** * * * ** * *** * ** consensus_8643#0 TGACT-TCGTCAACAACGGAACGTGATGTTCGACGTACACTTGAT-AGTGAACACGCAAA 302 consensus_8643#2 TGACT-TCGTCAACAACGGAACGTGATGTTCGACGTACACTTGAT-AGTGAACACGCAAA 351 consensus_8643#1 TGTGTATCGTTA--TATGCAACAACTTTTTTAACTGTCATCAACTCATTGAACTTCCTAA 314 ** * **** * * * *** * ** ** ** * * ***** * ** consensus_8643#0 TTACACTGACGTACGTCTTGTTCGTGACAAGAAAACTGGTAGATGGATTGGATTTGTTGA 362 consensus_8643#2 TTACACTGACGTACGTCTTGTTCGTGACAAGAAAACTGGTAGATGGATTGGATTTGTTGA 411 consensus_8643#1 CGGTACT---TTACAAGTTCTTCATTATATCTAGTCCTCTAAA-AATCCCTATTGTATGA 370 *** *** ** *** * * * * * ** * *** *** consensus_8643#0 TTTTGTATCAGCAAATGATGCTAAACAGTTTATGCGAGATTGCCAGGGAGAAATTGAGAT 422 consensus_8643#2 TTTTGTATCAGCAAATGATGCTAAACAGTTTA---------------------------- 443 consensus_8643#1 ACGTATGTCTGACCACTAGATTGATTTTCTTAG--TATCTTGTTTGATCTCCATTCTTAT 428 * * ** * * * * * *** consensus_8643#0 CCGAAAAACGATAATTAGACTTAACTA-TAGCAACCCTAAAGAAAAGCGTGATGATGAAT 481 consensus_8643#2 ------------------------------------------------------------ consensus_8643#1 AGTAGTTCTAGCTATTGGTCTTAGCTAATCATAACTCTGCTT------------------ 470 consensus_8643#0 TCGACGATGCATCACCAACTATTATGCTGCGTGGGATTCCCACTTCCCTTGATCATCGTG 541 consensus_8643#2 ------------------------------------------------------------ consensus_8643#1 ------------------------------------------------------------ consensus_8643#0 ATATACGTGACGCTCTTGATGATGC 566 consensus_8643#2 ------------------------- consensus_8643#1 ------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||