cluster # 8648

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Schistosoma mansoni
cluster # 8648 cluster # 8648 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8648#0 length = 681 sequences # 3

consensus_8648#1 length = 627 sequences # 4

consensusID : consensus_8648#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 681
fasta sequence

                              [CAGTCTAGCCGGTTATGCTAAAATATCTCGTGAAGCGAACGAAAAAGCCAAGAGTTTTCTACAATGGCATGTTAGAATAATTGTGTTTTTGTCCGACCACCTAAAACATTTGCCTGAACTATTCAAATTCAGCCGACACAGTAAGTTGAAGGAGGTAGTGGATAGGTTGGTGGACTACAACTCAACATACTTGACGGACGAGTGGGTTTGGATACAAAATAATGGTGCGCAGAAACATATAGACACTCAACCATTGGATCTGAGAAATCACAGTAAAAGTTAACACATCTCATCAATCCTCAAGTTGCCAACTATGGAGCAATGGACACAACACCCGTCCCCAACCTGTAGGTTGCAGGTTTGAACCCCATCCCATCTACCTCGGTTTAAGTAACCCAGTAATGCCAGTAGCTCCACCACAAGAAAGTGTAGCTTGAATTGGAACACGTCGACAAACGAGTTACATTACCATTCCTTAGATTGTGATTTATCTCATTAGTTAAAAGAAACATAAACAGTTAGTTTATCTCCCGAGCACGTTTAATAGGGACACAACCTATGTGTTTGCGGTAACCAAATCTAAGTGCAGACTCACACATGCGAAACCAAAATTAGCTTCTGGCAATTAAAATGGTTGAACTTATACTAATCGAAATGATCAAATAACATGTCATCTAGGTT]

[-] EMBL CD187484             [CAGTCTAGCCGGTTATGCTAAAATATCTCGTGAAGCGAACGAAAAAGCCAAGAGTTTTCTACAATGGCATGTTAGAATAATTGTGTTTTTGTCCGACCACCTAAAACATTTGCCTGAACTATTCAAATTCAGCCGACACAGTAAGTTGAAGGAGGTAGTGGATAGGTTGGTGGACTACAACTCAACATACTTGACGGACGAGTGGGTTTGGATACAAAATAATGGTGCGCAGAAACATATAGACACTCAACCATTGGATCTGAGAAATCACAGTAAAAGTTAACACATCTCATCAATCCTCAAGTTGCCAACTATGGAGCAATGGACACAACACCCGTCCCCAACCTGTAGGTTGCAGGTTTGAACCCCATCCCATCTACCTCGGTT                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD115668             [                                                                                  GTGTTTTTGTCCGACCACCTAAAACATTTGCCTGAACTATTCAAATTCAGCCGACACAGTAAGTTGAAGGAGGTAGTGGATAGGTTGGTGGACTACAACTCAACATACTTGACGGACGAGTGGGTTTGGATACAAAATAATGGTGCGCAGAAACATATAGACACTCAACCATTGGATCTGAGAAATCACAGTAAAAGTTAACACATCTCATCAATCCTCAAGTTGCCAACTATGGAGCAATGGACACAACACCCGTCCCCAACCTGTAGGTTGCAGGTTTGAACCCCATCCCATCTACCTCGGTTTAAGTAACCCAGTAATGCCAGTAGCTCCACCACAAGAAAGTGTAGCTTGAATTGGAACACGT                                                                                                                                                                                                                                        ]
[-] EMBL CD088625             [                                                                                                                         aTCAATTTCAGCGNACACAGTAAGTTGAAGGAGGTAGTGGATAGGTTGGTGGACTACAACTCAACATACTTGACGGACGAGTGGGTTTGGATACAAAATAATGGTGCGCAGAAACATATAGACACTCAACCATTGGATCTGAGAAATCACAGTAAAAGTTAACACATCTCATCAATCCTCAAGTTGCCAACTATGGAGCAATGGACACAACAGCCGTCCCCAACCTGTAGGTTGCAGGTTTGAACCCCATCCCATCTACCTCGGTTTAAGTAACCCAGTAATGCCAGAGGCTCCACCACAAGAAAGTGTAGCTTGAATTGGAACACGTCGACAAACGAGTTACATTACCATTCCTTAGATTGTGATTTATCTCATTAGTTAAAAGAAACATAAACAGTTAGTTTATCTCCCGAGCACGTTTAATAGGGACACAACCTATGTGTTTGCGGTAACCAAATCTAAGTGCAGACTCACACATGCGAAACCAAAATTAGCTTCTGGCAATTAAAATGGTTGAACTTATACTAATCGAAATGATCAAATAACATGTCATCTAGGTT]




>consensus_8648#0
CAGTCTAGCCGGTTATGCTAAAATATCTCGTGAAGCGAACGAAAAAGCCAAGAGTTTTCT
ACAATGGCATGTTAGAATAATTGTGTTTTTGTCCGACCACCTAAAACATTTGCCTGAACT
ATTCAAATTCAGCCGACACAGTAAGTTGAAGGAGGTAGTGGATAGGTTGGTGGACTACAA
CTCAACATACTTGACGGACGAGTGGGTTTGGATACAAAATAATGGTGCGCAGAAACATAT
AGACACTCAACCATTGGATCTGAGAAATCACAGTAAAAGTTAACACATCTCATCAATCCT
CAAGTTGCCAACTATGGAGCAATGGACACAACACCCGTCCCCAACCTGTAGGTTGCAGGT
TTGAACCCCATCCCATCTACCTCGGTTTAAGTAACCCAGTAATGCCAGTAGCTCCACCAC
AAGAAAGTGTAGCTTGAATTGGAACACGTCGACAAACGAGTTACATTACCATTCCTTAGA
TTGTGATTTATCTCATTAGTTAAAAGAAACATAAACAGTTAGTTTATCTCCCGAGCACGT
TTAATAGGGACACAACCTATGTGTTTGCGGTAACCAAATCTAAGTGCAGACTCACACATG
CGAAACCAAAATTAGCTTCTGGCAATTAAAATGGTTGAACTTATACTAATCGAAATGATC
AAATAACATGTCATCTAGGTT

consensusID : consensus_8648#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 627
fasta sequence

                              [CACGGCCCCTTATATTTCGAGGAACATATAGACACTCAACCATTGGATCTGAGAAATCACAGTAAAAGTTAACACATCTCATCAATCCTCAAGTTGCCAACTATGGAGCAATGGACACAACACCCGTCCCCAACCTGTAGGTTGCAGGTTTGAACCCCATCCCATCTACCTCGGTTTAAGTAACCCAGTAATGCCAGTAGCTCCACCACAAGAAAGTGTAGCTTGAATTGGAACACGTCGACAAACGAGTTACATTACCATTCCTTAGATTGTGATTTATCTCATTAGTTAAAAGAAACATAAACAGTTAGTTTATCTCCCGAGCACGTTTAATAGGGACACAACCTATGTGTTTGCGGTAACCAAATCTAAGTGCAGACTCACACATGCGAAACCAAAATTAGCTTCTGGCAATTAAAATGGTTGAACTTATACTAATCGAAATGATCAAATAACATGTCATCTAGGTTAACAGTTACATGAAATAGTTAAATCAACGTAACAAAAATATAGCATGAGTTATTTGACAAAAGTAGAGATGTGTACATCGCGTCAAAAACGTGGCATGGGCATACATGAAGTANGTTCTCACGTATTTGATGACCTGCGAACCTTGAGGAGNTCATC]

[+] EMBL CD060995             [CACGGCCCCTTATATTTCGAGGAACATATAGACACTCAACCATTGGATCTGAGAAATCACAGTAAAAGTTAACACATCTCATCAATCCTCAAGTTGCCAACTATGGAGCAATGGACACAACACCCGTCCCCAACCTGTAGGTTGCAGGTTTGAACCCCATCCCATCTACCTCGGTTTAAGTAACCCAGTAATGCCAGTAGCTCCACCACAAGAAAGTGTAGCTTGAATTGGAACACGTCGACAAACGAGTTACATTACCATTCCTTAGATTGTGATTTATCTCATTAGTTAAAAGAAACATAAACAGTTAGTTTATCTCCCGAGCACGTTTAATAGGGACACAACCTATGTGTTTGCGGTAACCAAATCTAAGTGCAGACTCACACATGCGAAACCAAAATTAGCTTCTGGCAATTAAAATGGTTGAACTTATACTAATCGAAATGATCAAATAACATGTCATCTAGGTTAACAGTTACATGAAATAGTTAAATCAACGTAACAAAAATATAGCATGAGTTATTTGACAAAAGTAGAGATGTGTACATCGCGTCAAAAACGTGGCATGGGCATACATGAAGTANGTTCTCACG                                  ]
[-] EMBL CD060767             [                                           TGGATCTGAGAAATCACAGTAAAAGTTAACACATCTCATCAATCCTCAAGTTGCCAACTATGGAGCAATGGACACAACACCCGTCCCCAACCTGTAGGTTGCAGGTTTGAACCCCATCCCATCTACCTCGGTTTAAGTAACCCAGTAATGCCAGTAGCTCCACCACAAGAAAGTGTAGCTTGAATTGGAACACGTCGACAAACGAGTTACATTACCATTCCTTAGATTGTGATTTATCTCATTAGTTAAAAGAAACATAAACAGTTAGTTTATCTCCCGAGCACGTTTAATAGGGACACAACCTATGTGTTTGCGGTAACCAAATCTAAGTGCAGACTCACACATGCGAAACCAAAATTAGCTTCTGGCAATTAAAATGGTTGAACTTATACTAATCGAAATGATCAAATAACATGTCATCTAGGTTAACAGTTACATGAAATAGTTAAATCAACGTAACAAAAATATAGCATGAGTTATTTGACAAAAGTAGAGATGTGTACATCGCGTCAAAAACGTGGCATGGGCATACATGAAGTAGGTTCTCACGTATTTGATGACCTGCGAACCTTGAGGAGNTCATC]
[+] EMBL CD191915             [                                                                                                        GGAGCAATGGACACAACACCCGTCCCCAACCTGTAGGTTGCAGGTTTGAACCCCATCCCATCTACCTCGGTTTAAGTAACCCAGTAATGCCAGTAGCTCCACCACAAGAAAGTGTAGCTTGAATTGGAACACGTCGACAAACGAGTTACATTACCATTCCTTAGATTGTGATTTATCTCATTAGTTAAAAGAAACATAAACAGTTAGTTTATCTCCCGAGCACGTTTAATAGGGACACAACCTATGTGTTTGCGGTAACCAAATCTAAGTGCAGACTCACACATGCGAAACCAAAATTAGCTTCTGGCAATTAAAATGGTTGAACTTATACTAATCGAAATGATCAAATAACATGTCATCTAGGTTAACAGTTACATGAAATAGTTAAATCAACGTAACAAAAATATAGCATGAGTTATTTGACAAAAGTAGAGATGTGTACA                                                                                ]
[-] EMBL CD060800             [                                                                                                                                                                                                                                           CGTCG CAAACGAGTTACATT CCATTCCTTAGATTGT A TTATCTCATTAGTTAAAAGAAACATAAACAGTTAGTTT TCTCCCGAGCACGTTTAATAGGGAC CAACCTATGTGTCTGCGGTAACCAAAT TAAGTGCAGACTCACACATG GAAACCAAAATTAGCTTC GGCAATTAAAATGGTTGAACTTATACTAATCGAAATGATCAAATAACATGTCAT TAGGTTAACAGTTACAT AAATAGTT AATCAACGT AC AAAATATAGCATGAGTTATTTGCCAAAc                                                                                               ]




>consensus_8648#1
CACGGCCCCTTATATTTCGAGGAACATATAGACACTCAACCATTGGATCTGAGAAATCAC
AGTAAAAGTTAACACATCTCATCAATCCTCAAGTTGCCAACTATGGAGCAATGGACACAA
CACCCGTCCCCAACCTGTAGGTTGCAGGTTTGAACCCCATCCCATCTACCTCGGTTTAAG
TAACCCAGTAATGCCAGTAGCTCCACCACAAGAAAGTGTAGCTTGAATTGGAACACGTCG
ACAAACGAGTTACATTACCATTCCTTAGATTGTGATTTATCTCATTAGTTAAAAGAAACA
TAAACAGTTAGTTTATCTCCCGAGCACGTTTAATAGGGACACAACCTATGTGTTTGCGGT
AACCAAATCTAAGTGCAGACTCACACATGCGAAACCAAAATTAGCTTCTGGCAATTAAAA
TGGTTGAACTTATACTAATCGAAATGATCAAATAACATGTCATCTAGGTTAACAGTTACA
TGAAATAGTTAAATCAACGTAACAAAAATATAGCATGAGTTATTTGACAAAAGTAGAGAT
GTGTACATCGCGTCAAAAACGTGGCATGGGCATACATGAAGTANGTTCTCACGTATTTGA
TGACCTGCGAACCTTGAGGAGNTCATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8648#0      CAGTCTAGCCGGTTATGCTAAAATATCTCGTGAAGCGAACGAAAAAGCCAAGAGTTTTCT 60
consensus_8648#1      ------------------------------------------------------------
                                                                                  

consensus_8648#0      ACAATGGCATGTTAGAATAATTGTGTTTTTGTCCGACCACCTAAAACATTTGCCTGAACT 120
consensus_8648#1      ------------------------------------------------------------
                                                                                  

consensus_8648#0      ATTCAAATTCAGCCGACACAGTAAGTTGAAGGAGGTAGTGGATAGGTTGGTGGACTACAA 180
consensus_8648#1      ------------------------------------------------------------
                                                                                  

consensus_8648#0      CTCAACATACTTGACGGACGAGTGGGTTTGGATACAAAATAATGGTGCGCAGAAACATAT 240
consensus_8648#1      ------------------------------CACGGCCCCTTATATTTCG-AGGAACATAT 29
                                                     *       * **  * ** ** *******

consensus_8648#0      AGACACTCAACCATTGGATCTGAGAAATCACAGTAAAAGTTAACACATCTCATCAATCCT 300
consensus_8648#1      AGACACTCAACCATTGGATCTGAGAAATCACAGTAAAAGTTAACACATCTCATCAATCCT 89
                      ************************************************************

consensus_8648#0      CAAGTTGCCAACTATGGAGCAATGGACACAACACCCGTCCCCAACCTGTAGGTTGCAGGT 360
consensus_8648#1      CAAGTTGCCAACTATGGAGCAATGGACACAACACCCGTCCCCAACCTGTAGGTTGCAGGT 149
                      ************************************************************

consensus_8648#0      TTGAACCCCATCCCATCTACCTCGGTTTAAGTAACCCAGTAATGCCAGTAGCTCCACCAC 420
consensus_8648#1      TTGAACCCCATCCCATCTACCTCGGTTTAAGTAACCCAGTAATGCCAGTAGCTCCACCAC 209
                      ************************************************************

consensus_8648#0      AAGAAAGTGTAGCTTGAATTGGAACACGTCGACAAACGAGTTACATTACCATTCCTTAGA 480
consensus_8648#1      AAGAAAGTGTAGCTTGAATTGGAACACGTCGACAAACGAGTTACATTACCATTCCTTAGA 269
                      ************************************************************

consensus_8648#0      TTGTGATTTATCTCATTAGTTAAAAGAAACATAAACAGTTAGTTTATCTCCCGAGCACGT 540
consensus_8648#1      TTGTGATTTATCTCATTAGTTAAAAGAAACATAAACAGTTAGTTTATCTCCCGAGCACGT 329
                      ************************************************************

consensus_8648#0      TTAATAGGGACACAACCTATGTGTTTGCGGTAACCAAATCTAAGTGCAGACTCACACATG 600
consensus_8648#1      TTAATAGGGACACAACCTATGTGTTTGCGGTAACCAAATCTAAGTGCAGACTCACACATG 389
                      ************************************************************

consensus_8648#0      CGAAACCAAAATTAGCTTCTGGCAATTAAAATGGTTGAACTTATACTAATCGAAATGATC 660
consensus_8648#1      CGAAACCAAAATTAGCTTCTGGCAATTAAAATGGTTGAACTTATACTAATCGAAATGATC 449
                      ************************************************************

consensus_8648#0      AAATAACATGTCATCTAGGTT--------------------------------------- 681
consensus_8648#1      AAATAACATGTCATCTAGGTTAACAGTTACATGAAATAGTTAAATCAACGTAACAAAAAT 509
                      *********************                                       

consensus_8648#0      ------------------------------------------------------------
consensus_8648#1      ATAGCATGAGTTATTTGACAAAAGTAGAGATGTGTACATCGCGTCAAAAACGTGGCATGG 569
                                                                                  

consensus_8648#0      ----------------------------------------------------------
consensus_8648#1      GCATACATGAAGTANGTTCTCACGTATTTGATGACCTGCGAACCTTGAGGAGNTCATC 627