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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8649#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 656 fasta sequence
[CGCTTTTGATTTGATAAGAATGATAGAGTAATTGGGAAAAAAAAGGAATTGGTGAAGTTCAATAACTTTAATCGGAATCAAATGAGTCATCCTGTTCTTCATCAGATTCACATATAGCACTATTATTATTACTAG-AATAATGTGAACTCTCCAAAGTAGATTTGAGACCATTTTTATCCGGCGATAATGGAGTGATTTCA-TTTCTAGTACGTCGACGAAGTCCACACGGTAAAGCATCCAAATCGGAAAAACTATCTTTTGGTGAATCACCATGAGATACAGTTGATTCATGAGGCATAAGCATAGCTGGTGCACGAAACATATAACATAAAGGATAGTAGATTAGATTGATACAAGAGAAAGAATATAAATCGGCATAACGTAACACTTGAGATGAGAAGAATGTATGACGAGAACCGTTTCTGAAAATACTTCCCAATGCACCATAAGACTCTTCCATTTGTTGAGCTACAGCCCGAATTTTTCTCTGTAAATCTCCAACATCCGGTCTTATATTCGATGAGATATTCAAATCACGATAGACTGTTTCTAAATTATTATCAATTTTTTGTAATTCATCAAATAATGATTTTTTCTTTTTCCAAACATAAATTTCATTTGCTAATTCTGGTATAATTAAATATGTTCTCCAACCG]
[+] EMBL CD074964 [CGCTTTTGATTTGATAAGAATGATAGAGTAATTGGGAAAAAAAAGGAATTGGTGAAGTTCAATAACTTTAATCGGAATCAAATGAGTCATCCTGTTCTTCATCAGATTCACATATAGCACTATTATTATTACTAG AATAATGTGAACTCTCCAAAGTAGATTTGAGACCATTTTTATCCGGCGATAATGGAGTGATTTCA TTTCTAGTACGTCGACGAAGTCCACACGGTAAAGCATCCAAATCGGAAAAACTATCTTTTGGTGAATCACCATGAGATACAGTTGATTCATGAGGCATAAGCATAGCTGGTGCACGAAACATATAACATAAAGGATAGTAGATTAGATTGATACAAGAGAAAGAATATAAATCGGCATAACGTAACACTTGAGATGAGAAGAATGTATGACGAGAACCGTTTCTGAAAATACTTCCCAATGCACCATAAGACTCTTCCATTTGTTGAGCTACAGCCCGAATTTTTCTCTGTAAATCTCCAACATCCGGTCTTATATTCGATGAGATATTCAAATCACGATAGACTGTTTCTAAATTATTATCAATTTTTTGTAATTCATCAAATAATGATTTTTTCTTTTTCCAAACATAAATTTCATTTGCTAATTCTGGTATAATTAAATATGTTCTCCAACCG]
[-] EMBL CD081142 [ TTTGA TTGAT AG ATGATAGAGTA T GGNNAAANAAGNNAT GTNGAG TCAANTACTTTAATCGGAATCAAATGAGTCAT CTGTTCTTCATCAGATTCACATATAGCACTA TATTA TACTAGAAATAATGTG ACTCTCCAAAGTAGA TTGAGACCA TTTTATCCGGCGATAATGGAGTGA TTCATTTTCTAGTACGTCGACGAAGTCCACACGGTANAGCATCCAAATCGGAAAAACTATCTTTTGGTGAATCACCATGAGATACAGTTGATTCATGAGGCATAAGCATAGCTGGTGCACGAAACATATAACATAAAGGATAGTAGATTAGATTGATACAAGAGAAAGAATATAAATCGGCATAACGTAACACTTGAGATGAGAAGAATGTATGACGAGAACCGTTTCTGAAAATACTTCCCAATGCACCATAAGACTCTTCCATTTGTTGAGCTACAGCCCGAATTTTTCTCTGTAAATCTCCAACATCCGGTCTTATATTCGATGAGATATTCAAATCACGATAGACTGTTTCTAAATTATTATCAATTTTTTGTAATTCATCAAATAATGATTTTTTCTTTTTCCAAACATAAATTTCATTTGCTAATTCTGGTATAATTAAATATGTTCT ]
[-] EMBL CD196397 [ TGAGTCATCCTGTTCTTCATCAGATTCACATATAGCACTATTATTATTACTAG AATAATGTGAACTCTCCAAAGTAGATTTGAGACCATTTTTATCCGGCGATAATGGAGTGATTTCA TTTCTAGTACGTCGACGAAGTCCACACGGTAAAGCATCCAAATCGGAAAAACTATCTCTTGGTGAATCACCATGAGATACAGTTGATTCATGAGGCATAAGCATAGCTGGTGCACGAAACATATAACATAAAGGATAGTAGATTAGATTGATACAAGAGAAAGAATATAAATCGGCATAACGTAACACTTGAGATGAGAAGAATGTATGACGAGAACCGTTTCTGAAAATACTTCCCAATGC ]
[-] EMBL CD131371 [ ATCAGATTCACATATAGCACTATTA TATTACTAG AATAATGTGAACTCTCCAAAGTAGATNTGAGACCATTTTTATCCGGCGATAATGGAGTGATTTCA TTTCTAGTACGTCGACGAAGTCCACACGGTAAAGCATCCAAATCGGAAAAACTTTCTTTTGGTGAATCACCATGAGATACAGTTGATTCATGAGGCATAAGCATAGCTGGTGCACGAAACATATAACATAAAGGATAGTAGATTAGATTGATACAAGAGAAAGAATATAAATCGGCATAACGTCACACTTGAGATGAGAAGAATGTATGACGAGACCCGTTTCTGAAAATACTTCCCAATGCACCATAAGACTCTTCCATTTGTTGAGCTACAGCCCGAATTTTTCTCTGTAAATCTCCAACATCCGGTCTTATATTCGATGAGATATTCAAATCACGATAGACTGTTTCTAAATTATTAAGAATTTTTTGTAATTCATCAAATAATGATTTTT ]
[+] EMBL CD197579 [ AAACATATAACATAAAGGATAGTAGATTAGATTGATACAAGAGAAAGAATATAAATCGGCATAACGTAACACTTGAGATGAGAAGAATGTATGACGAGAACCGTTTCTGAAAATACTTCCCAATGCACCATAAGACTCTTCCATTTGTTGAGCTACAGCCCGAATTTTTCTCTGTAAATCTCCAACATCCGGTCTTATATTCGATGAGATATTCAAATCACGATAGACTGTTTCTAAATTATTATCAATTTTTTGTAATTCATCAAATAATGATTTTTTCTTTTTCCAAACATAAATTTCATTTGCTAATTCTGGTATAATTAAATATGTTC ]
consensusID : consensus_8649#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 533 fasta sequence
[CAACGATCCTGACTACACAAAAGTGGAGCATGGTGTCAAAAAAGGATCTCTGTACATGTCATACGCTTCAATTTATGAGGATGTGAGAACTGCATGTGATTGGATGCATAGAGGAGAACTAAAACAACGTACTTTGGCAAATATTAGTGAATATGTTGAAAGAGATCCACGTTTATGTACTTTGTTAGATCGGCTACGAGTGAATGGTGCAAAAGTGTTTCTGTTAACGAACAGTGACTTTGAATATTCTCATGCAATTATGAGCTACATTTTGGGAGACCCAAGACCCGATGGTACTATTCGTAAATGGACAAGTTATTTTGATTATATTGTGACTGATGCCAGAAAACCAGCATTCTTTCAAGAAGGAACAATTTTAAGAGTTGTTTGTCAAGATACTGGACAGCCGAGTATTGGCCATCATATGGGTCCCTTAGAAACTGGTCAAATATATTCCGGAGGATCATGTGAAGTTTTTTCTAATCTAATAGGTGCTCGTGGTAAAGATGTTTTATATGTTGGTGATCATGTTT]
[+] EMBL AW017216 [CAACGATCCTGACTACACAAAAGTGGAGCATGGTGTCAAAAAAGGATCTCTGTACATGTCATACGCTTCAATTTATGAGGATGTGAGAACTGCATGTGATTGGATGCATAGAGGAGAACTAAAACAACGTACTTTGGCAAATATTAGTGAATATGTTGAAAGAGATCCACGTTTATGTACTTTGTTAGATCGGCTACGAGTGAATGGTGCAAAAGTGTTTCTGTTAACGAACAGTGACTTTGAATATTCTCATGCAATTATGAGCTACATTTTGGGAGACCCAAGACCCGATGGTACTATTCGTAAATGGACAAGTTATTTTGATTATATTGTGACTGATGCCAGAAAACCAGCATTCTTTCAAGAAGGAACAATTTTAAGAGTTGTTTGTCAAGATACTGGACAGCCGAGTATTGGCCATCATATGGGTCCCTTAGAAACTGGTCAAATATATTCCGGAGGATCATGTGAAGTTTTTTCTAATCTAATAGGTGCTCGTG ]
[+] EMBL CD182458 [ CTATTCGTAAATGGACAAGTTATTTTGATTATATTGTAACTGATGCCAGAAAACCAGCATTCTTTCAAGAAGGAACAATTTTAAGAGTTGTTTGTCAAGATACTGGACAGCCAAGTATTGGCCATCATATGGGTCCCTTAGAAACTGGTCAAATATATTCCGGAGGATCATGTGAAGTTTTTTCTAATCTAATTGGTGCTCGTGGTAAAGATGTTTTATATGTTGGTGATCATGTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8649#0 ---CGCTTTTGATTTGATAAGAATGATAGAGTAATTGGGAAAAAAAAGGAATTGGTGAAG 57
consensus_8649#1 CAACGATCCTGACTACACAAAAGTG---GAGCATGGTGTCAAAAAAGGATCTCTGTACAT 57
** * *** * * ** * ** *** * * ****** * * ** *
consensus_8649#0 TTCAATAACTTTAATCGGAATCAAATGAGTCATCCTGTTCTTCATCAGATTCACATATAG 117
consensus_8649#1 GTCATACGCTTCAATTT-ATGAGGATGTGAGAAC-TGCATGTGATTGGATGCATAGAGGA 115
*** *** *** * *** * * * ** * ** *** ** * *
consensus_8649#0 CACTATTATTATTACTAGAATAATGTGAACTCTCCAAAGTAGATTTGAGACCATTTTTAT 177
consensus_8649#1 GA-----------ACTAAAACAACGT--ACTTTGGCAAAT--ATTAGTGAATATGTTGAA 160
* **** ** ** ** *** * ** * *** * ** ** ** *
consensus_8649#0 CCGGCGATAATGGAGTGATTTCATTTCTAGTACGTCGACGAAGTCCACACGGTAAAGCAT 237
consensus_8649#1 --AGAGATCCACGTTTATGTACTTTGTTAGATCGGCTACGAGTGAATGGTGCAAAAGTGT 218
* *** * * * * ** *** ** * **** * **** *
consensus_8649#0 CCAAATCGGAAAAACTATCTTTTGGTGAATCACCATGAGAT-ACAGTTGA---TTCATGA 293
consensus_8649#1 TTCTGTTA-ACGAACAGTGACTTTGAATATTCTCATGCAATTATGAGCTACATTTTGGGA 277
* * *** * ** * ** **** ** * * ** **
consensus_8649#0 GGCATAAGCATAGCTGGTGCACGAAACATATAACATAAAGGATAGTA-GATTAGATTGAT 352
consensus_8649#1 GACCCAAGACCCGATGGT--ACTATTCGTA-AATGGACAAGTTATTTTGATTATATTGTG 334
* * *** * **** ** * * ** ** * * * ** * ***** ****
consensus_8649#0 ACAAGAGAAAGAATATAAATCGGCATAACGTAACACTTGAGATGAGAAGAATGTATGACG 412
consensus_8649#1 ACTGATGCCAGAA----AACCAGCAT-------TCTTTCAAGAAGGAACAATTT----TA 379
** * **** ** * **** ** * *** *** *
consensus_8649#0 AGAACCGTTTCTGAAAATACTTCCCAATGCACCATAAG--ACTCTTCCATTTGTTGAGCT 470
consensus_8649#1 AGAGTTGTTTGTCAAGATACTGGACAGCCGAGTATTGGCCATCATATGGGTCCCTTAGAA 439
*** **** * ** ***** ** * ** * * * * * **
consensus_8649#0 ACAGCCCGAATTTTTCTCTGTAAATCTCCAACATCCGGTCTTATATTCGATGAGATATTC 530
consensus_8649#1 ACTGGTCAAATATATTCCGGAGGATCATGTGAAGTT--TTTTCTAATCTAATAGGTGCTC 497
** * * *** * * * * *** * * ** ** ** * ** * **
consensus_8649#0 AAATCACGATAGACTGTTTCTAAATTATTATCAATTTTTTGTAATTCATCAAATAATGAT 590
consensus_8649#1 GTGGT---AAAGATGTTTTATATGTTGGTGATCATGTTT--------------------- 533
* *** *** ** ** * ** ***
consensus_8649#0 TTTTTCTTTTTCCAAACATAAATTTCATTTGCTAATTCTGGTATAATTAAATATGTTCTC 650
consensus_8649#1 ------------------------------------------------------------
consensus_8649#0 CAACCG 656
consensus_8649#1 ------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||