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Schistosoma mansoni
cluster # 8649 cluster # 8649       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8649#0 length = 656 sequences # 5  
consensus_8649#1 length = 533 sequences # 2  

consensusID : consensus_8649#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 656
fasta sequence
                              [CGCTTTTGATTTGATAAGAATGATAGAGTAATTGGGAAAAAAAAGGAATTGGTGAAGTTCAATAACTTTAATCGGAATCAAATGAGTCATCCTGTTCTTCATCAGATTCACATATAGCACTATTATTATTACTAG-AATAATGTGAACTCTCCAAAGTAGATTTGAGACCATTTTTATCCGGCGATAATGGAGTGATTTCA-TTTCTAGTACGTCGACGAAGTCCACACGGTAAAGCATCCAAATCGGAAAAACTATCTTTTGGTGAATCACCATGAGATACAGTTGATTCATGAGGCATAAGCATAGCTGGTGCACGAAACATATAACATAAAGGATAGTAGATTAGATTGATACAAGAGAAAGAATATAAATCGGCATAACGTAACACTTGAGATGAGAAGAATGTATGACGAGAACCGTTTCTGAAAATACTTCCCAATGCACCATAAGACTCTTCCATTTGTTGAGCTACAGCCCGAATTTTTCTCTGTAAATCTCCAACATCCGGTCTTATATTCGATGAGATATTCAAATCACGATAGACTGTTTCTAAATTATTATCAATTTTTTGTAATTCATCAAATAATGATTTTTTCTTTTTCCAAACATAAATTTCATTTGCTAATTCTGGTATAATTAAATATGTTCTCCAACCG]

[+] EMBL CD074964             [CGCTTTTGATTTGATAAGAATGATAGAGTAATTGGGAAAAAAAAGGAATTGGTGAAGTTCAATAACTTTAATCGGAATCAAATGAGTCATCCTGTTCTTCATCAGATTCACATATAGCACTATTATTATTACTAG AATAATGTGAACTCTCCAAAGTAGATTTGAGACCATTTTTATCCGGCGATAATGGAGTGATTTCA TTTCTAGTACGTCGACGAAGTCCACACGGTAAAGCATCCAAATCGGAAAAACTATCTTTTGGTGAATCACCATGAGATACAGTTGATTCATGAGGCATAAGCATAGCTGGTGCACGAAACATATAACATAAAGGATAGTAGATTAGATTGATACAAGAGAAAGAATATAAATCGGCATAACGTAACACTTGAGATGAGAAGAATGTATGACGAGAACCGTTTCTGAAAATACTTCCCAATGCACCATAAGACTCTTCCATTTGTTGAGCTACAGCCCGAATTTTTCTCTGTAAATCTCCAACATCCGGTCTTATATTCGATGAGATATTCAAATCACGATAGACTGTTTCTAAATTATTATCAATTTTTTGTAATTCATCAAATAATGATTTTTTCTTTTTCCAAACATAAATTTCATTTGCTAATTCTGGTATAATTAAATATGTTCTCCAACCG]
[-] EMBL CD081142             [    TTTGA TTGAT AG ATGATAGAGTA  T GGNNAAANAAGNNAT  GTNGAG TCAANTACTTTAATCGGAATCAAATGAGTCAT CTGTTCTTCATCAGATTCACATATAGCACTA TATTA TACTAGAAATAATGTG ACTCTCCAAAGTAGA TTGAGACCA TTTTATCCGGCGATAATGGAGTGA TTCATTTTCTAGTACGTCGACGAAGTCCACACGGTANAGCATCCAAATCGGAAAAACTATCTTTTGGTGAATCACCATGAGATACAGTTGATTCATGAGGCATAAGCATAGCTGGTGCACGAAACATATAACATAAAGGATAGTAGATTAGATTGATACAAGAGAAAGAATATAAATCGGCATAACGTAACACTTGAGATGAGAAGAATGTATGACGAGAACCGTTTCTGAAAATACTTCCCAATGCACCATAAGACTCTTCCATTTGTTGAGCTACAGCCCGAATTTTTCTCTGTAAATCTCCAACATCCGGTCTTATATTCGATGAGATATTCAAATCACGATAGACTGTTTCTAAATTATTATCAATTTTTTGTAATTCATCAAATAATGATTTTTTCTTTTTCCAAACATAAATTTCATTTGCTAATTCTGGTATAATTAAATATGTTCT       ]
[-] EMBL CD196397             [                                                                                  TGAGTCATCCTGTTCTTCATCAGATTCACATATAGCACTATTATTATTACTAG AATAATGTGAACTCTCCAAAGTAGATTTGAGACCATTTTTATCCGGCGATAATGGAGTGATTTCA TTTCTAGTACGTCGACGAAGTCCACACGGTAAAGCATCCAAATCGGAAAAACTATCTCTTGGTGAATCACCATGAGATACAGTTGATTCATGAGGCATAAGCATAGCTGGTGCACGAAACATATAACATAAAGGATAGTAGATTAGATTGATACAAGAGAAAGAATATAAATCGGCATAACGTAACACTTGAGATGAGAAGAATGTATGACGAGAACCGTTTCTGAAAATACTTCCCAATGC                                                                                                                                                                                                                      ]
[-] EMBL CD131371             [                                                                                                    ATCAGATTCACATATAGCACTATTA TATTACTAG AATAATGTGAACTCTCCAAAGTAGATNTGAGACCATTTTTATCCGGCGATAATGGAGTGATTTCA TTTCTAGTACGTCGACGAAGTCCACACGGTAAAGCATCCAAATCGGAAAAACTTTCTTTTGGTGAATCACCATGAGATACAGTTGATTCATGAGGCATAAGCATAGCTGGTGCACGAAACATATAACATAAAGGATAGTAGATTAGATTGATACAAGAGAAAGAATATAAATCGGCATAACGTCACACTTGAGATGAGAAGAATGTATGACGAGACCCGTTTCTGAAAATACTTCCCAATGCACCATAAGACTCTTCCATTTGTTGAGCTACAGCCCGAATTTTTCTCTGTAAATCTCCAACATCCGGTCTTATATTCGATGAGATATTCAAATCACGATAGACTGTTTCTAAATTATTAAGAATTTTTTGTAATTCATCAAATAATGATTTTT                                                              ]
[+] EMBL CD197579             [                                                                                                                                                                                                                                                                                                                              AAACATATAACATAAAGGATAGTAGATTAGATTGATACAAGAGAAAGAATATAAATCGGCATAACGTAACACTTGAGATGAGAAGAATGTATGACGAGAACCGTTTCTGAAAATACTTCCCAATGCACCATAAGACTCTTCCATTTGTTGAGCTACAGCCCGAATTTTTCTCTGTAAATCTCCAACATCCGGTCTTATATTCGATGAGATATTCAAATCACGATAGACTGTTTCTAAATTATTATCAATTTTTTGTAATTCATCAAATAATGATTTTTTCTTTTTCCAAACATAAATTTCATTTGCTAATTCTGGTATAATTAAATATGTTC        ]


>consensus_8649#0 CGCTTTTGATTTGATAAGAATGATAGAGTAATTGGGAAAAAAAAGGAATTGGTGAAGTTC AATAACTTTAATCGGAATCAAATGAGTCATCCTGTTCTTCATCAGATTCACATATAGCAC TATTATTATTACTAGAATAATGTGAACTCTCCAAAGTAGATTTGAGACCATTTTTATCCG GCGATAATGGAGTGATTTCATTTCTAGTACGTCGACGAAGTCCACACGGTAAAGCATCCA AATCGGAAAAACTATCTTTTGGTGAATCACCATGAGATACAGTTGATTCATGAGGCATAA GCATAGCTGGTGCACGAAACATATAACATAAAGGATAGTAGATTAGATTGATACAAGAGA AAGAATATAAATCGGCATAACGTAACACTTGAGATGAGAAGAATGTATGACGAGAACCGT TTCTGAAAATACTTCCCAATGCACCATAAGACTCTTCCATTTGTTGAGCTACAGCCCGAA TTTTTCTCTGTAAATCTCCAACATCCGGTCTTATATTCGATGAGATATTCAAATCACGAT AGACTGTTTCTAAATTATTATCAATTTTTTGTAATTCATCAAATAATGATTTTTTCTTTT TCCAAACATAAATTTCATTTGCTAATTCTGGTATAATTAAATATGTTCTCCAACCG



consensusID : consensus_8649#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 533
fasta sequence
                              [CAACGATCCTGACTACACAAAAGTGGAGCATGGTGTCAAAAAAGGATCTCTGTACATGTCATACGCTTCAATTTATGAGGATGTGAGAACTGCATGTGATTGGATGCATAGAGGAGAACTAAAACAACGTACTTTGGCAAATATTAGTGAATATGTTGAAAGAGATCCACGTTTATGTACTTTGTTAGATCGGCTACGAGTGAATGGTGCAAAAGTGTTTCTGTTAACGAACAGTGACTTTGAATATTCTCATGCAATTATGAGCTACATTTTGGGAGACCCAAGACCCGATGGTACTATTCGTAAATGGACAAGTTATTTTGATTATATTGTGACTGATGCCAGAAAACCAGCATTCTTTCAAGAAGGAACAATTTTAAGAGTTGTTTGTCAAGATACTGGACAGCCGAGTATTGGCCATCATATGGGTCCCTTAGAAACTGGTCAAATATATTCCGGAGGATCATGTGAAGTTTTTTCTAATCTAATAGGTGCTCGTGGTAAAGATGTTTTATATGTTGGTGATCATGTTT]

[+] EMBL AW017216             [CAACGATCCTGACTACACAAAAGTGGAGCATGGTGTCAAAAAAGGATCTCTGTACATGTCATACGCTTCAATTTATGAGGATGTGAGAACTGCATGTGATTGGATGCATAGAGGAGAACTAAAACAACGTACTTTGGCAAATATTAGTGAATATGTTGAAAGAGATCCACGTTTATGTACTTTGTTAGATCGGCTACGAGTGAATGGTGCAAAAGTGTTTCTGTTAACGAACAGTGACTTTGAATATTCTCATGCAATTATGAGCTACATTTTGGGAGACCCAAGACCCGATGGTACTATTCGTAAATGGACAAGTTATTTTGATTATATTGTGACTGATGCCAGAAAACCAGCATTCTTTCAAGAAGGAACAATTTTAAGAGTTGTTTGTCAAGATACTGGACAGCCGAGTATTGGCCATCATATGGGTCCCTTAGAAACTGGTCAAATATATTCCGGAGGATCATGTGAAGTTTTTTCTAATCTAATAGGTGCTCGTG                                 ]
[+] EMBL CD182458             [                                                                                                                                                                                                                                                                                                        CTATTCGTAAATGGACAAGTTATTTTGATTATATTGTAACTGATGCCAGAAAACCAGCATTCTTTCAAGAAGGAACAATTTTAAGAGTTGTTTGTCAAGATACTGGACAGCCAAGTATTGGCCATCATATGGGTCCCTTAGAAACTGGTCAAATATATTCCGGAGGATCATGTGAAGTTTTTTCTAATCTAATTGGTGCTCGTGGTAAAGATGTTTTATATGTTGGTGATCATGTTT]


>consensus_8649#1 CAACGATCCTGACTACACAAAAGTGGAGCATGGTGTCAAAAAAGGATCTCTGTACATGTC ATACGCTTCAATTTATGAGGATGTGAGAACTGCATGTGATTGGATGCATAGAGGAGAACT AAAACAACGTACTTTGGCAAATATTAGTGAATATGTTGAAAGAGATCCACGTTTATGTAC TTTGTTAGATCGGCTACGAGTGAATGGTGCAAAAGTGTTTCTGTTAACGAACAGTGACTT TGAATATTCTCATGCAATTATGAGCTACATTTTGGGAGACCCAAGACCCGATGGTACTAT TCGTAAATGGACAAGTTATTTTGATTATATTGTGACTGATGCCAGAAAACCAGCATTCTT TCAAGAAGGAACAATTTTAAGAGTTGTTTGTCAAGATACTGGACAGCCGAGTATTGGCCA TCATATGGGTCCCTTAGAAACTGGTCAAATATATTCCGGAGGATCATGTGAAGTTTTTTC TAATCTAATAGGTGCTCGTGGTAAAGATGTTTTATATGTTGGTGATCATGTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8649#0      ---CGCTTTTGATTTGATAAGAATGATAGAGTAATTGGGAAAAAAAAGGAATTGGTGAAG 57
consensus_8649#1      CAACGATCCTGACTACACAAAAGTG---GAGCATGGTGTCAAAAAAGGATCTCTGTACAT 57
                         ** *  *** *  * ** * **   *** *    *  ****** *   *  **  * 

consensus_8649#0      TTCAATAACTTTAATCGGAATCAAATGAGTCATCCTGTTCTTCATCAGATTCACATATAG 117
consensus_8649#1      GTCATACGCTTCAATTT-ATGAGGATGTGAGAAC-TGCATGTGATTGGATGCATAGAGGA 115
                       ***    *** ***   *     *** *  * * **    * **  *** ** * *   

consensus_8649#0      CACTATTATTATTACTAGAATAATGTGAACTCTCCAAAGTAGATTTGAGACCATTTTTAT 177
consensus_8649#1      GA-----------ACTAAAACAACGT--ACTTTGGCAAAT--ATTAGTGAATATGTTGAA 160
                       *           **** ** ** **  *** *   ** *  *** * **  ** ** * 

consensus_8649#0      CCGGCGATAATGGAGTGATTTCATTTCTAGTACGTCGACGAAGTCCACACGGTAAAGCAT 237
consensus_8649#1      --AGAGATCCACGTTTATGTACTTTGTTAGATCGGCTACGAGTGAATGGTGCAAAAGTGT 218
                         * ***    *  *   * * **  ***  ** * ****         *  ****  *

consensus_8649#0      CCAAATCGGAAAAACTATCTTTTGGTGAATCACCATGAGAT-ACAGTTGA---TTCATGA 293
consensus_8649#1      TTCTGTTA-ACGAACAGTGACTTTGAATATTCTCATGCAATTATGAGCTACATTTTGGGA 277
                           *   *  ***  *   ** *   **   ****  ** *      *   **   **

consensus_8649#0      GGCATAAGCATAGCTGGTGCACGAAACATATAACATAAAGGATAGTA-GATTAGATTGAT 352
consensus_8649#1      GACCCAAGACCCGATGGT--ACTATTCGTA-AATGGACAAGTTATTTTGATTATATTGTG 334
                      * *  ***    * ****  ** *  * ** **   * * * ** *  ***** ****  

consensus_8649#0      ACAAGAGAAAGAATATAAATCGGCATAACGTAACACTTGAGATGAGAAGAATGTATGACG 412
consensus_8649#1      ACTGATGCCAGAA----AACCAGCAT-------TCTTTCAAGAAGGAACAATTT----TA 379
                      **    *  ****    ** * ****          ** *     *** *** *      

consensus_8649#0      AGAACCGTTTCTGAAAATACTTCCCAATGCACCATAAG--ACTCTTCCATTTGTTGAGCT 470
consensus_8649#1      AGAGTTGTTTGTCAAGATACTGGACAGCCGAGTATTGGCCATCATATGGGTCCCTTAGAA 439
                      ***   **** * ** *****   **    *  **  *  *   *     *   * **  

consensus_8649#0      ACAGCCCGAATTTTTCTCTGTAAATCTCCAACATCCGGTCTTATATTCGATGAGATATTC 530
consensus_8649#1      ACTGGTCAAATATATTCCGGAGGATCATGTGAAGTT--TTTTCTAATCTAATAGGTGCTC 497
                      ** *  * *** * *  * *   ***      *     * ** ** ** *  ** *  **

consensus_8649#0      AAATCACGATAGACTGTTTCTAAATTATTATCAATTTTTTGTAATTCATCAAATAATGAT 590
consensus_8649#1      GTGGT---AAAGATGTTTTATATGTTGGTGATCATGTTT--------------------- 533
                              * ***   *** **  **  *    ** ***                     

consensus_8649#0      TTTTTCTTTTTCCAAACATAAATTTCATTTGCTAATTCTGGTATAATTAAATATGTTCTC 650
consensus_8649#1      ------------------------------------------------------------
                                                                                  

consensus_8649#0      CAACCG 656
consensus_8649#1      ------
                            




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)