These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8649#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 656 fasta sequence [CGCTTTTGATTTGATAAGAATGATAGAGTAATTGGGAAAAAAAAGGAATTGGTGAAGTTCAATAACTTTAATCGGAATCAAATGAGTCATCCTGTTCTTCATCAGATTCACATATAGCACTATTATTATTACTAG-AATAATGTGAACTCTCCAAAGTAGATTTGAGACCATTTTTATCCGGCGATAATGGAGTGATTTCA-TTTCTAGTACGTCGACGAAGTCCACACGGTAAAGCATCCAAATCGGAAAAACTATCTTTTGGTGAATCACCATGAGATACAGTTGATTCATGAGGCATAAGCATAGCTGGTGCACGAAACATATAACATAAAGGATAGTAGATTAGATTGATACAAGAGAAAGAATATAAATCGGCATAACGTAACACTTGAGATGAGAAGAATGTATGACGAGAACCGTTTCTGAAAATACTTCCCAATGCACCATAAGACTCTTCCATTTGTTGAGCTACAGCCCGAATTTTTCTCTGTAAATCTCCAACATCCGGTCTTATATTCGATGAGATATTCAAATCACGATAGACTGTTTCTAAATTATTATCAATTTTTTGTAATTCATCAAATAATGATTTTTTCTTTTTCCAAACATAAATTTCATTTGCTAATTCTGGTATAATTAAATATGTTCTCCAACCG] [+] EMBL CD074964 [CGCTTTTGATTTGATAAGAATGATAGAGTAATTGGGAAAAAAAAGGAATTGGTGAAGTTCAATAACTTTAATCGGAATCAAATGAGTCATCCTGTTCTTCATCAGATTCACATATAGCACTATTATTATTACTAG AATAATGTGAACTCTCCAAAGTAGATTTGAGACCATTTTTATCCGGCGATAATGGAGTGATTTCA TTTCTAGTACGTCGACGAAGTCCACACGGTAAAGCATCCAAATCGGAAAAACTATCTTTTGGTGAATCACCATGAGATACAGTTGATTCATGAGGCATAAGCATAGCTGGTGCACGAAACATATAACATAAAGGATAGTAGATTAGATTGATACAAGAGAAAGAATATAAATCGGCATAACGTAACACTTGAGATGAGAAGAATGTATGACGAGAACCGTTTCTGAAAATACTTCCCAATGCACCATAAGACTCTTCCATTTGTTGAGCTACAGCCCGAATTTTTCTCTGTAAATCTCCAACATCCGGTCTTATATTCGATGAGATATTCAAATCACGATAGACTGTTTCTAAATTATTATCAATTTTTTGTAATTCATCAAATAATGATTTTTTCTTTTTCCAAACATAAATTTCATTTGCTAATTCTGGTATAATTAAATATGTTCTCCAACCG] [-] EMBL CD081142 [ TTTGA TTGAT AG ATGATAGAGTA T GGNNAAANAAGNNAT GTNGAG TCAANTACTTTAATCGGAATCAAATGAGTCAT CTGTTCTTCATCAGATTCACATATAGCACTA TATTA TACTAGAAATAATGTG ACTCTCCAAAGTAGA TTGAGACCA TTTTATCCGGCGATAATGGAGTGA TTCATTTTCTAGTACGTCGACGAAGTCCACACGGTANAGCATCCAAATCGGAAAAACTATCTTTTGGTGAATCACCATGAGATACAGTTGATTCATGAGGCATAAGCATAGCTGGTGCACGAAACATATAACATAAAGGATAGTAGATTAGATTGATACAAGAGAAAGAATATAAATCGGCATAACGTAACACTTGAGATGAGAAGAATGTATGACGAGAACCGTTTCTGAAAATACTTCCCAATGCACCATAAGACTCTTCCATTTGTTGAGCTACAGCCCGAATTTTTCTCTGTAAATCTCCAACATCCGGTCTTATATTCGATGAGATATTCAAATCACGATAGACTGTTTCTAAATTATTATCAATTTTTTGTAATTCATCAAATAATGATTTTTTCTTTTTCCAAACATAAATTTCATTTGCTAATTCTGGTATAATTAAATATGTTCT ] [-] EMBL CD196397 [ TGAGTCATCCTGTTCTTCATCAGATTCACATATAGCACTATTATTATTACTAG AATAATGTGAACTCTCCAAAGTAGATTTGAGACCATTTTTATCCGGCGATAATGGAGTGATTTCA TTTCTAGTACGTCGACGAAGTCCACACGGTAAAGCATCCAAATCGGAAAAACTATCTCTTGGTGAATCACCATGAGATACAGTTGATTCATGAGGCATAAGCATAGCTGGTGCACGAAACATATAACATAAAGGATAGTAGATTAGATTGATACAAGAGAAAGAATATAAATCGGCATAACGTAACACTTGAGATGAGAAGAATGTATGACGAGAACCGTTTCTGAAAATACTTCCCAATGC ] [-] EMBL CD131371 [ ATCAGATTCACATATAGCACTATTA TATTACTAG AATAATGTGAACTCTCCAAAGTAGATNTGAGACCATTTTTATCCGGCGATAATGGAGTGATTTCA TTTCTAGTACGTCGACGAAGTCCACACGGTAAAGCATCCAAATCGGAAAAACTTTCTTTTGGTGAATCACCATGAGATACAGTTGATTCATGAGGCATAAGCATAGCTGGTGCACGAAACATATAACATAAAGGATAGTAGATTAGATTGATACAAGAGAAAGAATATAAATCGGCATAACGTCACACTTGAGATGAGAAGAATGTATGACGAGACCCGTTTCTGAAAATACTTCCCAATGCACCATAAGACTCTTCCATTTGTTGAGCTACAGCCCGAATTTTTCTCTGTAAATCTCCAACATCCGGTCTTATATTCGATGAGATATTCAAATCACGATAGACTGTTTCTAAATTATTAAGAATTTTTTGTAATTCATCAAATAATGATTTTT ] [+] EMBL CD197579 [ AAACATATAACATAAAGGATAGTAGATTAGATTGATACAAGAGAAAGAATATAAATCGGCATAACGTAACACTTGAGATGAGAAGAATGTATGACGAGAACCGTTTCTGAAAATACTTCCCAATGCACCATAAGACTCTTCCATTTGTTGAGCTACAGCCCGAATTTTTCTCTGTAAATCTCCAACATCCGGTCTTATATTCGATGAGATATTCAAATCACGATAGACTGTTTCTAAATTATTATCAATTTTTTGTAATTCATCAAATAATGATTTTTTCTTTTTCCAAACATAAATTTCATTTGCTAATTCTGGTATAATTAAATATGTTC ] consensusID : consensus_8649#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 533 fasta sequence [CAACGATCCTGACTACACAAAAGTGGAGCATGGTGTCAAAAAAGGATCTCTGTACATGTCATACGCTTCAATTTATGAGGATGTGAGAACTGCATGTGATTGGATGCATAGAGGAGAACTAAAACAACGTACTTTGGCAAATATTAGTGAATATGTTGAAAGAGATCCACGTTTATGTACTTTGTTAGATCGGCTACGAGTGAATGGTGCAAAAGTGTTTCTGTTAACGAACAGTGACTTTGAATATTCTCATGCAATTATGAGCTACATTTTGGGAGACCCAAGACCCGATGGTACTATTCGTAAATGGACAAGTTATTTTGATTATATTGTGACTGATGCCAGAAAACCAGCATTCTTTCAAGAAGGAACAATTTTAAGAGTTGTTTGTCAAGATACTGGACAGCCGAGTATTGGCCATCATATGGGTCCCTTAGAAACTGGTCAAATATATTCCGGAGGATCATGTGAAGTTTTTTCTAATCTAATAGGTGCTCGTGGTAAAGATGTTTTATATGTTGGTGATCATGTTT] [+] EMBL AW017216 [CAACGATCCTGACTACACAAAAGTGGAGCATGGTGTCAAAAAAGGATCTCTGTACATGTCATACGCTTCAATTTATGAGGATGTGAGAACTGCATGTGATTGGATGCATAGAGGAGAACTAAAACAACGTACTTTGGCAAATATTAGTGAATATGTTGAAAGAGATCCACGTTTATGTACTTTGTTAGATCGGCTACGAGTGAATGGTGCAAAAGTGTTTCTGTTAACGAACAGTGACTTTGAATATTCTCATGCAATTATGAGCTACATTTTGGGAGACCCAAGACCCGATGGTACTATTCGTAAATGGACAAGTTATTTTGATTATATTGTGACTGATGCCAGAAAACCAGCATTCTTTCAAGAAGGAACAATTTTAAGAGTTGTTTGTCAAGATACTGGACAGCCGAGTATTGGCCATCATATGGGTCCCTTAGAAACTGGTCAAATATATTCCGGAGGATCATGTGAAGTTTTTTCTAATCTAATAGGTGCTCGTG ] [+] EMBL CD182458 [ CTATTCGTAAATGGACAAGTTATTTTGATTATATTGTAACTGATGCCAGAAAACCAGCATTCTTTCAAGAAGGAACAATTTTAAGAGTTGTTTGTCAAGATACTGGACAGCCAAGTATTGGCCATCATATGGGTCCCTTAGAAACTGGTCAAATATATTCCGGAGGATCATGTGAAGTTTTTTCTAATCTAATTGGTGCTCGTGGTAAAGATGTTTTATATGTTGGTGATCATGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8649#0 ---CGCTTTTGATTTGATAAGAATGATAGAGTAATTGGGAAAAAAAAGGAATTGGTGAAG 57 consensus_8649#1 CAACGATCCTGACTACACAAAAGTG---GAGCATGGTGTCAAAAAAGGATCTCTGTACAT 57 ** * *** * * ** * ** *** * * ****** * * ** * consensus_8649#0 TTCAATAACTTTAATCGGAATCAAATGAGTCATCCTGTTCTTCATCAGATTCACATATAG 117 consensus_8649#1 GTCATACGCTTCAATTT-ATGAGGATGTGAGAAC-TGCATGTGATTGGATGCATAGAGGA 115 *** *** *** * *** * * * ** * ** *** ** * * consensus_8649#0 CACTATTATTATTACTAGAATAATGTGAACTCTCCAAAGTAGATTTGAGACCATTTTTAT 177 consensus_8649#1 GA-----------ACTAAAACAACGT--ACTTTGGCAAAT--ATTAGTGAATATGTTGAA 160 * **** ** ** ** *** * ** * *** * ** ** ** * consensus_8649#0 CCGGCGATAATGGAGTGATTTCATTTCTAGTACGTCGACGAAGTCCACACGGTAAAGCAT 237 consensus_8649#1 --AGAGATCCACGTTTATGTACTTTGTTAGATCGGCTACGAGTGAATGGTGCAAAAGTGT 218 * *** * * * * ** *** ** * **** * **** * consensus_8649#0 CCAAATCGGAAAAACTATCTTTTGGTGAATCACCATGAGAT-ACAGTTGA---TTCATGA 293 consensus_8649#1 TTCTGTTA-ACGAACAGTGACTTTGAATATTCTCATGCAATTATGAGCTACATTTTGGGA 277 * * *** * ** * ** **** ** * * ** ** consensus_8649#0 GGCATAAGCATAGCTGGTGCACGAAACATATAACATAAAGGATAGTA-GATTAGATTGAT 352 consensus_8649#1 GACCCAAGACCCGATGGT--ACTATTCGTA-AATGGACAAGTTATTTTGATTATATTGTG 334 * * *** * **** ** * * ** ** * * * ** * ***** **** consensus_8649#0 ACAAGAGAAAGAATATAAATCGGCATAACGTAACACTTGAGATGAGAAGAATGTATGACG 412 consensus_8649#1 ACTGATGCCAGAA----AACCAGCAT-------TCTTTCAAGAAGGAACAATTT----TA 379 ** * **** ** * **** ** * *** *** * consensus_8649#0 AGAACCGTTTCTGAAAATACTTCCCAATGCACCATAAG--ACTCTTCCATTTGTTGAGCT 470 consensus_8649#1 AGAGTTGTTTGTCAAGATACTGGACAGCCGAGTATTGGCCATCATATGGGTCCCTTAGAA 439 *** **** * ** ***** ** * ** * * * * * ** consensus_8649#0 ACAGCCCGAATTTTTCTCTGTAAATCTCCAACATCCGGTCTTATATTCGATGAGATATTC 530 consensus_8649#1 ACTGGTCAAATATATTCCGGAGGATCATGTGAAGTT--TTTTCTAATCTAATAGGTGCTC 497 ** * * *** * * * * *** * * ** ** ** * ** * ** consensus_8649#0 AAATCACGATAGACTGTTTCTAAATTATTATCAATTTTTTGTAATTCATCAAATAATGAT 590 consensus_8649#1 GTGGT---AAAGATGTTTTATATGTTGGTGATCATGTTT--------------------- 533 * *** *** ** ** * ** *** consensus_8649#0 TTTTTCTTTTTCCAAACATAAATTTCATTTGCTAATTCTGGTATAATTAAATATGTTCTC 650 consensus_8649#1 ------------------------------------------------------------ consensus_8649#0 CAACCG 656 consensus_8649#1 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||