These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_865#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 287 fasta sequence [GTTGCGGCAGGAATCGCAAGAGCACAAACCCCGCCGCCAGCGCCAACATCCCTGTTCGCATAAAGCACTCCTTGAACCCGTTCAGCTCTCGGAATAGCCGGGTTATACGGACGGTGCTTTATTTACTGTCACAAAGTCTGAATCGGCCGCCCGTAAAATCCGGGCATACTGCCCGCCTGAACTGCCCGAGAAGCCTTATGCCGCGTCGCTTATTCAAACGCTACATGCCGGACCCGACCCGCATCAGGGAACGCAAACACTTACGTTTTTTCGGTCCCCTGCTCCAC] [+] EMBL CD158720 [GTTGCGGCAGGAATCGCAAGAGCACAAACCCCGCCGCCAGCGCCAACATCCCTGTTCGCATAAAGCACTCCTTGAACCCGTTCAGCTCTCGGAATAGCCGGGTTATACGGACGGTGCTTTATTTACTGTCACAAAGTCTGAATCGGCCGCCCGTAAAATCCGGGCATACTGCCCGCCTGAACTGCCCGAGAAGCCTTATGCCGCGTCGCTTATTCAAACGCTACATGCCGGACCCGACCCGCATCAGGGAACGCAAACACTTACGTTTTTTCGGTCCCCTGCTCCAC] consensusID : consensus_865#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 242 fasta sequence [CATCCCTGTTCGCATAAAGCACTCCTTGAACCCGTTCAGCTCTCGGAATAGCCGGGTTATACGGACGGTGCTTTATTTACTGTCACAAAGTTTTAATCGGCCGCCCGTAGAATCCGGGAATACGGACCGCCTAAATATTCGAGAAACCTTATGCCGCGTCGCTTATTCAAACGCTACATGCCGGACCCGAACCGCATCAGGGAGAACAAACACTTACGTATTTTCGGTCGCCCTGCTCCACG] [-] EMBL CD158841 [CATCCCTGTTCGCATAAAGCACTCCTTGAACCCGTTCAGCTCTCGGAATAGCCGGGTTATACGGACGGTGCTTTATTTACTGTCACAAAGTTTTAATCGGCCGCCCGTAGAATCCGGGAATACGGACCGCCTAAATATTCGAGAAACCTTATGCCGCGTCGCTTATTCAAACGCTACATGCCGGACCCGAACCGCATCAGGGAGAACAAACACTTACGTATTTTCGGTCGCCCTGCTCCACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_865#0 GTTGCGGCAGGAATCGCAAGAGCACAAACCCCGCCGCCAGCGCCAACATCCCTGTTCGCA 60 consensus_865#1 ----------------------------------------------CATCCCTGTTCGCA 14 ************** consensus_865#0 TAAAGCACTCCTTGAACCCGTTCAGCTCTCGGAATAGCCGGGTTATACGGACGGTGCTTT 120 consensus_865#1 TAAAGCACTCCTTGAACCCGTTCAGCTCTCGGAATAGCCGGGTTATACGGACGGTGCTTT 74 ************************************************************ consensus_865#0 ATTTACTGTCACAAAGTCTGAATCGGCCGCCCGTAAAATCCGGGCATACTGCCCGCCTGA 180 consensus_865#1 ATTTACTGTCACAAAGTTTTAATCGGCCGCCCGTAGAATCCGGGAATACGGACCGCCTAA 134 ***************** * *************** ******** **** * ****** * consensus_865#0 ACTGCCCGAGAAGCCTTATGCCGCGTCGCTTATTCAAACGCTACATGCCGGACCCGACCC 240 consensus_865#1 A-TATTCGAGAAACCTTATGCCGCGTCGCTTATTCAAACGCTACATGCCGGACCCGAACC 193 * * ****** ******************************************** ** consensus_865#0 GCATCAGGGAACGCAAACACTTACGTTTTTTCGGTC-CCCTGCTCCAC- 287 consensus_865#1 GCATCAGGGAGAACAAACACTTACGTATTTTCGGTCGCCCTGCTCCACG 242 ********** ************* ********* *********** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||