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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8651#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 603 fasta sequence
[GCAATGTTGGCGCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAAAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGATTACTCAGGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAGTCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCGGATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGACGATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTACAGATACTTCGGAAACTTAAGCACTGCAATATTGTTTCTCTGTATTATTACTTTTATTCAACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAATACAAGAATATATTCCTCAAACATTGAGCCGCCTTATCAAACACTACTGGCGTATTCGGCAGATAATTCCACTTGTATATGTTAAGTTGTACAGTTTTCAACTTCTGCGTGGATTGGCTTACATTCACAGTCAAGGCGTATGCCATCGAGATATAAAGC]
[+] EMBL AI067259 [GCAATGTTGGCGCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAAAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGATTACTCAGGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAGTCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCGGATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGACGATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTACAGATACTTCGGAAACTTAAGCACTGCAATATTGTTTCTCTGTATTATTACTTTTATTCAACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAATACAAGAATATATTCCTCAAACATTGAGCCGCCTTATCAAACACTACTGGCGTATTCGGCAGATAATTCCACTTGTATATGTTAAGTTGTACAGTTTTCAACTTCTGCGTGGATTGGCTTACATTCACAGTCAAGGCGTATGCCATCGAGATATAAAGC]
[+] EMBL AI068063 [ GCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAAAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGATTACTCAGGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAGTCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCGGATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGACGATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTACAGATACTTCGGAAACTTAAGCACTGCAATATTGTTTCTCTGTATTATTACTTTTATTCAACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAA ]
[+] EMBL AI067398 [ GCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAAAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGATTACTCAGGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAGTCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCGGATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGACGATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTACAGATACTTCGGAAACTTAAGCACTGCAATATTGTTTCTCTGTATTATTACTTTTATTCAACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAA ]
[+] EMBL AI067140 [ GCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAAAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGATTACTCAGGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAGTCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCGGATGAAAAAGCTATTGGAAGCGGGTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGACGATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAA ]
consensusID : consensus_8651#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 559 fasta sequence
[CAATGTTGGCAGCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAAAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGTAAGTCAGAATCATTATTTTTCAGGATATAAATATGATGGATTGCTAATGTTCATTTTGCTTTTTTTATTACATGATTACTCAGGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAGTCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCGGATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGACGATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTACGGATACTTCGGAAACTTAAGCACTGCAATATTGNTTCTCTGTATTATTACTTTTATTCAACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAATACAAGAATATATTCCTCANACATTGAGCCGNCTTATCCA]
[+] EMBL CD118606 [CAATGTTGGCAGCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAAAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGTAAGTCAGAATCATTATTTTTCAGGATATAAATATGATGGATTGCTAATGTTCATTTTGCTTTTTTTATTACATGATTACTCAGGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAGTCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCGGATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGACGATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTACGGATACTTCGGAAACTTAAGCACTGCAATATTGNTTCTCTGTATTATTACTTTTATTCAACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAATACAAGAATATATTCCTCANACATTGAGCCGNCTTATCCA]
consensusID : consensus_8651#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 473 fasta sequence
[AATGTTGGCGCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAAAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAGTCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCGGATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGACGATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTACAGATACTTCGGAAACTTAAGCACTGCAATATTGTTTCTCTGTATTATTACTTTTATTCAACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAATACAAGAATATATTCCTCAAACATTGAGCCGCCTTATCAAA]
[-] EMBL CD156783 [AATGTTGGCGCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAAAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAGTCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCGGATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGACGATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTACAGATACTTCGGAAACTTAAGCACTGCAATATTGTTTCTCTGTATTATTACTTTTATTCAACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAATACAAGAATATATTCCTCAAACATTGAGCCGCCTTATCAAA]
[-] EMBL CD156773 [AATGTTGGCGCATTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCAAAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAGTCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCGGATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGACGATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTACAGATACTTCGGAAACTTAAGCACTGCAATATTGTTTCTCTGTATTATTACTTTTATTCAACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAATACAAGAATATATTCCTCAAACATTGAGCCGCCTTATCAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8651#0 GCAATGTTGGC-GCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCA 59
consensus_8651#2 --AATGTTGGC-GCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCA 57
consensus_8651#1 -CAATGTTGGCAGCGTTTCCAAAATTACGTAGTGTTATGACTTCTGTAGAATTGAAGGCA 59
********* ************************************************
consensus_8651#0 AAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAG------------- 106
consensus_8651#2 AAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAG------------- 104
consensus_8651#1 AAAACGAACAACGAATCTATTGATAGTTGTCTTTCAAAAATCCCTAGTAAGTCAGAATCA 119
***********************************************
consensus_8651#0 ------------------------------------------------------------
consensus_8651#2 ------------------------------------------------------------
consensus_8651#1 TTATTTTTCAGGATATAAATATGATGGATTGCTAATGTTCATTTTGCTTTTTTTATTACA 179
consensus_8651#0 --ATTACTCAGGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAG 164
consensus_8651#2 ------------GATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAG 152
consensus_8651#1 TGATTACTCAGGGATCCCGTCCGTTGTTTCCCAGATGGAAAACAAGATGATAAACCTAAG 239
************************************************
consensus_8651#0 TCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCG 224
consensus_8651#2 TCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCG 212
consensus_8651#1 TCTATATGGGTTGAAGCAGTTAACTGTGATACCTCTTGTCCCGTACAAATCACGTATTCG 299
************************************************************
consensus_8651#0 GATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGAC 284
consensus_8651#2 GATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGAC 272
consensus_8651#1 GATGAAAAAGCTATTGGAAGCGGTTCTTTTGGTGTTGTTTACGTTGCTACTCTGTCTGAC 359
************************************************************
consensus_8651#0 GATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTA 344
consensus_8651#2 GATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTA 332
consensus_8651#1 GATCGCAAAGTAGCAATTAAAAAGGTTCTGCAAGATAAGCGGTATAAAAACCGCGAATTA 419
************************************************************
consensus_8651#0 CAGATACTTCGGAAACTTAAGCACTGCAATATTGTTTCTCTGTATTATTACTTTTATTCA 404
consensus_8651#2 CAGATACTTCGGAAACTTAAGCACTGCAATATTGTTTCTCTGTATTATTACTTTTATTCA 392
consensus_8651#1 CGGATACTTCGGAAACTTAAGCACTGCAATATTGNTTCTCTGTATTATTACTTTTATTCA 479
* ******************************** *************************
consensus_8651#0 ACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAATACAAGAATATATTCCTCAA 464
consensus_8651#2 ACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAATACAAGAATATATTCCTCAA 452
consensus_8651#1 ACATCATCTTCAAAACCAAATGAAACTTACCTAAATTTAATACAAGAATATATTCCTCAN 539
***********************************************************
consensus_8651#0 ACATTGAGCCGCCTTATCAAACACTACTGGCGTATTCGGCAGATAATTCCACTTGTATAT 524
consensus_8651#2 ACATTGAGCCGCCTTATCAAA--------------------------------------- 473
consensus_8651#1 ACATTGAGCCGNCTTATCCA---------------------------------------- 559
*********** ****** *
consensus_8651#0 GTTAAGTTGTACAGTTTTCAACTTCTGCGTGGATTGGCTTACATTCACAGTCAAGGCGTA 584
consensus_8651#2 ------------------------------------------------------------
consensus_8651#1 ------------------------------------------------------------
consensus_8651#0 TGCCATCGAGATATAAAGC 603
consensus_8651#2 -------------------
consensus_8651#1 -------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||