cluster # 8652

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Schistosoma mansoni
cluster # 8652 cluster # 8652 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8652#0 length = 688 sequences # 6

consensus_8652#1 length = 304 sequences # 1

consensusID : consensus_8652#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 688
fasta sequence

                              [TACCCAGCCANAATTTGGCACGAGGAGCATTTGGAGGTCGTTATTTTTTGCTCATATAGGTGCGAGAGAAGATCTTCTGGATTTTGAAACAATTATACTGGCTGATCAGATAGGACGGTTTCTAAGTGCCTTCTTGGAGGCGATTCTAATCAGGCGTTCAATTTTTGGATCTGATCCTGGAGGTGCAACTTTTGGAAAATGGTTAATGAATCTTAAGGTTGTATCGTGTGAAGAAATCATACCTTTTCCAGATGTCGTTGAAGTTGTTCCAGGAGCTGATCTGGGGATTATTCGAGCACTTGTACGTTCGTTGTTGAAAAGTACAAGCTTTCTTACATTCTTCTCATTTGTTTGTATGATGGTATTTCAATATCATCGATGTACATATGATATTATTGCTGGAACTTTAGTTGTACAACCTATTACACCAACAACTAATCAACCAAACAGTAATAATGAACAGAGACAACAAGAACAACGTCAACAATAGTGATTGGGCATAACAATGAATTTGCCTATCAAACTTGTTTAAATAATCTTGGGTTCCCTCTATACATCTACCTTGTGTGTAGAATGTTAATATTGATGCAATACCACAAACTGTATAATATATTGTAAAAATTTGTCTTTCTTTATTCAGATCCGTTGTAAAATTTGAAAACTGGATTTCATCTTTACAATGAAAAGT]

[+] EMBL CD079580             [TACCCAGCCANAATTTGGCACGAGGAGCATTTGGAGGTCGTTATTTTTTGCTCATATAGGTGCGAGAGAAGATCTTCTGGATTTTGAAACAATTATACTGGCTGATCAGATAGGACGGTTTCTAAGTGCCTTCTTGGAGGCGATTCTAATCAGGCGTTCAATTTTTGGATCTGATCCTGGAGGTGCAACTTTTGGAAAATGGTTAATGAATCTTAAGGTTGTATCGTGTGAAGAAATCATACCTTTTCCAGATGTCGTTGAAGTTGTTCCAGGAGCTGATCTGGGGATTATTCGAGCACTTGTACGTTCGTTGTTGAAAAGTACAAGCTTTCTTACATTCTTCTCATTTGTTTGTATGATGGTATTTCAATATCATCGATGTACATATGATATTATTGCTGGAACTTTAGTTGTACAACCTATTACACCAACAACTAATCAACCAAACAGTAATAATGAACAGAGACAACAAGAACAACGTCAACAATAGTGATTGGGCATAACAATGAATTTGCCTATCAAACTTGTTTAAATAATCTTGGGTTCCCTCTATACATCTACCTTGTGTGTAGAATGTTAATATTGATGCAATACCACAAACTGTATAATATATTGTAAAAATTTGTCTTTCTTTATTCAGATCCGTTGTAAAATTTGAAAACTGGATTTCATCTTTACAATGAAAAG ]
[-] EMBL CD097637             [                                                                                      AAACAATTATACTGGCTGATCAGATAGGACGGTTTCTAAGTGCCTTCTTGGAGGCGATTCTAATCAGGCGTTCAATTTTTGGATCTGATCCTGGAGGTGCAACTTTTGGAAAATGGTTAATGAATCTTAAGGTTGTATCGTGTGAAGAAATCATACCTTTTCCAGATGTCGTTGAAGTTGTTCCA                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD073843             [                                                                                                                 GACGGTTTCTAAGTGCCTTCTTGGAGGCGATTCTAATCAGGCGTTCAATTTTTGGATCTGATCCTGGAGGTGCAACTTTTGGAAAATGGTTAATGAATCTTAAGGTTGTATCGTGTGAAGAAATCATACCTTTTCCAGATGTCGTTGAAGTTGTTCCAGGAGCTGATCTGGGGATTATTCGAGCACTTGTACGTTCGTTGTTGAAAAGTACAAGCTTTCTTACATTCTTCTCATTTGTTTGTATGATGGTATTTCAATATCATCGATGTACATATGATATTATTGCTGGAACTTTAGTTGTACAACCTATTACACCAACAACTAATCAACCAAACAGTAATAATGAACAGAGACAACAAGAACAACGTCAACAATAGTGATTGGGCATAACAATGAATTTGCCTATCAAACTTGTTTAAATAATCTTGGGTTCCCTCTATACATCTACCTTGTGTGTAGAATGTTAATATTGATGCAATACCACAAACTGTATAATATATTGTAAAAATTTGTCTTTCTTTATTCAGATCCGTTGTAAAATTTGAAAACTGGATTTCATATTTACAATGAAAAGT]
[+] EMBL CD139976             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TAATAATGAACAGAGACAACAAGAACAACGACAACAATAGTGATTGGGCATAACAATGAATTTGCCTATCAAACTTGTTTAAATAATCTTGGGTTCCCTCTATACATCTACCTTGTGTGTAGAATGTTAATATTGATGCAATACCACAAACTGTATAATATATTGTAAAAATTTGTCTTTCTTTATTCAGATCCGTTGTAAAATTTGAAAACTGGATTTC                  ]
[+] EMBL CD140038             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TAATAATGAACAGAGACAACAAGAACAACGTCAACAATAGTGATTGGGCATAACAATGAATTTGCCTATCAAACTTGTTTAAATAATCTTGGGTTCCCTCTATACATCTACCTTGTGTGTAGAATGTTAATATTGATGCAATACCACAAACTGTATAATATATTGTAAAAATTTGTCTTTCTTTATTCAGATCCGTTGTAAAATTTGAAAACTGGATTTC                  ]
[-] EMBL CD139881             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AATGAACAGAGACAACAAGAACAACGTCAACAATAGTGATTGGGCATAACAATGAATTTGCCTATCAAACTTGTTTAAATAATCTTGGGTTCCCTCTATACATCTACCTTGTGTGTAGAATGTTAATATTGATGCAATACCACAAACTGTATAATATATTGTAAAAATTTGTCTTTCTTTATTCAGATCCGTTGTAAAATTTGAAAACTGGATTTCA                 ]




>consensus_8652#0
TACCCAGCCANAATTTGGCACGAGGAGCATTTGGAGGTCGTTATTTTTTGCTCATATAGG
TGCGAGAGAAGATCTTCTGGATTTTGAAACAATTATACTGGCTGATCAGATAGGACGGTT
TCTAAGTGCCTTCTTGGAGGCGATTCTAATCAGGCGTTCAATTTTTGGATCTGATCCTGG
AGGTGCAACTTTTGGAAAATGGTTAATGAATCTTAAGGTTGTATCGTGTGAAGAAATCAT
ACCTTTTCCAGATGTCGTTGAAGTTGTTCCAGGAGCTGATCTGGGGATTATTCGAGCACT
TGTACGTTCGTTGTTGAAAAGTACAAGCTTTCTTACATTCTTCTCATTTGTTTGTATGAT
GGTATTTCAATATCATCGATGTACATATGATATTATTGCTGGAACTTTAGTTGTACAACC
TATTACACCAACAACTAATCAACCAAACAGTAATAATGAACAGAGACAACAAGAACAACG
TCAACAATAGTGATTGGGCATAACAATGAATTTGCCTATCAAACTTGTTTAAATAATCTT
GGGTTCCCTCTATACATCTACCTTGTGTGTAGAATGTTAATATTGATGCAATACCACAAA
CTGTATAATATATTGTAAAAATTTGTCTTTCTTTATTCAGATCCGTTGTAAAATTTGAAA
ACTGGATTTCATCTTTACAATGAAAAGT

consensusID : consensus_8652#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 304
fasta sequence

                              [AGAAATCATACCTTTTCCAGATGTCGTTGAAGTTGTTCCAGGAGCTGATCTGGGGATTATTCGAGCACTTGTACGTTCGTTGTTGAAAAGTACAAGCTTTCTTACNTTCTTCTCATTTGTTTTTGTTATGGTNNNTTTTTGAGTTTATATAAGNNNCCCCCCCCCCCCNNNTATGGGGNTGTGTTTTTTACTCCTTNNNNNNCCCCNCCTTTTTTTCCCACCGGGATAAATAACAGAGGCCCACCAGAACCANCGTCCACCAATAGTGATTGGGCAAGACAATGAATTTGCCTATCAAACTTGT]

[-] EMBL CD155075             [AGAAATCATACCTTTTCCAGATGTCGTTGAAGTTGTTCCAGGAGCTGATCTGGGGATTATTCGAGCACTTGTACGTTCGTTGTTGAAAAGTACAAGCTTTCTTACNTTCTTCTCATTTGTTTTTGTTATGGTNNNTTTTTGAGTTTATATAAGNNNCCCCCCCCCCCCNNNTATGGGGNTGTGTTTTTTACTCCTTNNNNNNCCCCNCCTTTTTTTCCCACCGGGATAAATAACAGAGGCCCACCAGAACCANCGTCCACCAATAGTGATTGGGCAAGACAATGAATTTGCCTATCAAACTTGT]




>consensus_8652#1
AGAAATCATACCTTTTCCAGATGTCGTTGAAGTTGTTCCAGGAGCTGATCTGGGGATTAT
TCGAGCACTTGTACGTTCGTTGTTGAAAAGTACAAGCTTTCTTACNTTCTTCTCATTTGT
TTTTGTTATGGTNNNTTTTTGAGTTTATATAAGNNNCCCCCCCCCCCCNNNTATGGGGNT
GTGTTTTTTACTCCTTNNNNNNCCCCNCCTTTTTTTCCCACCGGGATAAATAACAGAGGC
CCACCAGAACCANCGTCCACCAATAGTGATTGGGCAAGACAATGAATTTGCCTATCAAAC
TTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8652#0      TACCCAGCCANAATTTGGCACGAGGAGCATTTGGAGGTCGTTATTTTTTGCTCATATAGG 60
consensus_8652#1      ------------------------------------------------------------
                                                                                  

consensus_8652#0      TGCGAGAGAAGATCTTCTGGATTTTGAAACAATTATACTGGCTGATCAGATAGGACGGTT 120
consensus_8652#1      ------------------------------------------------------------
                                                                                  

consensus_8652#0      TCTAAGTGCCTTCTTGGAGGCGATTCTAATCAGGCGTTCAATTTTTGGATCTGATCCTGG 180
consensus_8652#1      ------------------------------------------------------------
                                                                                  

consensus_8652#0      AGGTGCAACTTTTGGAAAATGGTTAATGAATCTTAAGGTTGTATCGTGTGAAGAAATCAT 240
consensus_8652#1      ---------------------------------------------------AGAAATCAT 9
                                                                         *********

consensus_8652#0      ACCTTTTCCAGATGTCGTTGAAGTTGTTCCAGGAGCTGATCTGGGGATTATTCGAGCACT 300
consensus_8652#1      ACCTTTTCCAGATGTCGTTGAAGTTGTTCCAGGAGCTGATCTGGGGATTATTCGAGCACT 69
                      ************************************************************

consensus_8652#0      TGTACGTTCGTTGTTGAAAAGTACAAGCTTTCTTACATTCTTCTCATTTGTTTGTATGAT 360
consensus_8652#1      TGTACGTTCGTTGTTGAAAAGTACAAGCTTTCTTACNTTCTTCTCATTTGTTTTTGTTAT 129
                      ************************************ **************** * * **

consensus_8652#0      GGTATTTC----AATAT-CATCGATGTACATATGATATTATTGCTGGAACTTTAGTTGTA 415
consensus_8652#1      GGTNNNTTTTTGAGTTTATATAAGNNNCCCCCCCCCCCCNNNTATGGGGNTGTGTTTTTT 189
                      ***   *     * * *  **       *               ***   * *  ** * 

consensus_8652#0      CAACCTATTACACCAACAACTAATCAACCAAACAGTAATAATGAACAGAGAC--AACAAG 473
consensus_8652#1      ACTCCTTNNNNNNCCCCNCCTTTTTTTCCCACCGG-GATAAATAACAGAGGCCCACCAGA 248
                         ***       *  *  **  *   ** * * *  ****  ******* *  * **  

consensus_8652#0      AACAACGTCAAC-AATAGTGATTGGGCATAACAATGAATTTGCCTATCAAACTTGTTTAA 532
consensus_8652#1      ACCANCGTCCACCAATAGTGATTGGGCAAGACAATGAATTTGCCTATCAAACTTGT---- 304
                      * ** **** ** ***************  **************************    

consensus_8652#0      ATAATCTTGGGTTCCCTCTATACATCTACCTTGTGTGTAGAATGTTAATATTGATGCAAT 592
consensus_8652#1      ------------------------------------------------------------
                                                                                  

consensus_8652#0      ACCACAAACTGTATAATATATTGTAAAAATTTGTCTTTCTTTATTCAGATCCGTTGTAAA 652
consensus_8652#1      ------------------------------------------------------------
                                                                                  

consensus_8652#0      ATTTGAAAACTGGATTTCATCTTTACAATGAAAAGT 688
consensus_8652#1      ------------------------------------