These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8654#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1320 fasta sequence [AACCAAATGATCCTGGCGTAAATCATCACCATGTTTTAAAATAGCTCGATACGTATCGCCATTCGGTTGGATAAAAGTCAGTAATGCAGGTCGTTGAAAACTCTTGAATAGCGTAGCTGTAGACGATTGTACGCCGCATACAATAATATCCGGATTTAGAGGAAGTGGGAATGGTTTATCAATATGCCTAATATGAGCATATTCTTCACTATCCAACTTTGATCTTAACAATTCAATTTTACGTGAACGATTACCCAAATCATTGGTAACTGATTTTAGCAACCGACATAAATCTTGAATGAATTGTGTTTGTTGTAGTAGTTCTATGTTCCATTTTTGACAAGTAGGACTACCAGCATCAAAAGCATGTAAAAGTCTGTTCAAAACATGTTTATACATCTTTTGAGTATCCGGTGAATTTACTGTATCCTGTTCCGAGAAATCATCTTCACCATCATTACTGTTTGCTTCCAACCGTAGAAACCAATATAGGTAATTTGCAATACGAAAATNTAGTTGAGCACGTCTTATGAGGAAACTGGCTAAATCTTCTTTCCATTCTTTTTTCAAATCAGAGTGCCATCCGATTAATTCTTCACGACTACGTTCAATATTTGACAATGCACCACCTCGTCCAGTACGAAAAG-ATGATGGTATTTTACGATTTGATGTCAAATTTGTAGATTTCACCTCTTCAGAATTACCTTCTTTTATAACATCTGAAA-CATTACGTTTAGAAGTTCGATCATTCCTTTTAGGTCGAACTGAAAATATATCATGCCAATTTTCATAGCGTAATGCCTGTACAAGTTGATATAAGTACAAGATAAGTTCCTCATCACTGGCAGCTTCCAAACGATGTACAGCGAACCTTCTACCGGCAGGATGAAGAAATTGACGAGTGAACAGTTCTAGGACATGTTCAGGCGCTATTGTTGGCCATTGTTTTAACAATTCAACAGCTTGATTCACTTGTTCTGTATATTCCCAACGAACAGATAAAATGAATTTCGCTAAAGAAGTTTCAGGGAATTTGTCAGCTAAATAAAATCGATACTTCCAGATAAGATCCCCATCTGACTCGGATATATTTAAT-CCCGGTGGTAAATCAAGAACAAGTTTCAATCTATCTAATATGTCTTTATTAGGTTTACGTGCACGATCCACGTCAGCTGTACGAGCATTACGTGTCATTTTAAAGTACTTTTCATCTACAGGATTCCATCGATCAGCTCGTAATTCTGACTGTTCAGGTAGAAATGGACGCTGAAATATTACAGGCATATACACAGATGGATGGCTTCGTGAAAACTCAAATTT] [-] EMBL CD119271 [AACCAAATGATCCTGGCGTAAATCATCACCATGTTTTAAAATAGCTCGATACGTATCGCCATTCGGTTGGATAAAAGTCAGTAATGCAGGTCGTTGAAAACTCTTGAATAGCGTAGCTGTAGACGATTGTACGCCGCATACAATAATATCCGGATTTAGAGGAAGTGGGAATGGTTTATCAATATGCCTAATATGAGCATATTCTTCACTATCCAACTTTGATCTTAACAATTCA ] [+] EMBL CD190139 [ TCACCATGTTTTAAAATAGCTCGATACGTATCGCCATTCGGTTGGATAAAAGTCAGTAATGCAGGTCGTTGAAAACTCTTGAATAGTGTAGCTGTAGACGATTGTACGCCGCATACAATAATATCCGGATTTAGAGGAAGTGGGAATGGTTTATCAATATGCCTAATATGAGCATATTCTTCACTATCCAACTTTGATCTTAACAATTCAATTTTACGTGAACGATTACCCAAATCATTGGTAACTGATTTTAGCAACCGACATAAATCTTGAATGAATTGTGTTTGTTGTAGTAGTTCTATGTTCCATTTTTGACAAGTAGGACTACCAGCATCAAAAGCATGTAAAAGTCTGTTCAAAACATGTTTATACATCTTTTGAGTATCCGGTGAATTTACTGTATCCTGTTCCGAGAAATCATCTTCACCATCATTACTGTTTGCTTCCAACCGTAGAAACCAATATAGGTAATTTGCAATACGAAAATNTAGTTGAGCACGTCTTATGAGGAAACTGGCTAAATCTTCTTTCCATTCTTTTTTCAAATCAGAGTGCCATCCGATTAATTCTTCACGACTACGTTCAATATTTGACAATGCACCAACTCGTCCAGTACGAAAAGAATGATGGTATTTTACGATTTGAT ] [+] EMBL AI976685 [ GTGCCATCCGATTAATTCTTCACGACTACGTTCAATATTTGACAATGCACCACCTCGTCCAGTACGAAAAG ATGATGGTATTTTACGATTTGATGTCAAATTTGTAGATTTCACCTCTTCAGAATTACCTTCTTTTATAACATCTGAAA CATTACGTTTAGAAGTTCGATCATTCCTTTTAGGTCGAACTGAAAATATATCATGCCAATTTTCATAGCGTAATGCCTGTACAAGTTGATATAAGTACAAGATAAGTTCCTCATCACTGGCAGCTTCCAAACGATGTACAGCGAACCTTCTACCGGCAGGATGAAGAAATTGACGAGTGAACAGTTCTAGGACATGTTCAGGCGCTATTGTTGGCCATTGT ] [+] EMBL AW017200 [ GTGCCATCCGATTAATTCTTCACGACTACGTTCAATATTTGACAATGCACCACCTCGTCCAGTACGAAAAG ATGATGGTATTTTACGATTTGATGTCAAATTTGTAGATTTCACCTCTTCAGAATTACCTTCTTTTATAACATCTGAAA CATTACGTTTAGAAGTTCGATCATTCCTTTTAGGTCGAACTGAAAATATATCATGCCAATTTTCATAGCGTAATGCCTGTACAAGTTGATATAAGTACAAGATAAGTTCCTCATCACTGGCAGCTTCCAAACGATGTACAGCGAACCTTCTACCGGCAGGATGAAGAAATTGACGAGTGAACAGTTCTAGGACATGTTCA ] [+] EMBL BF936712 [ gacTTTGATGTCAAATTTGTAGATTTCACCTCTTCAGAATTACCTTCTTTTATAACATCTGAAACCATTACGTTTAGAAGTTCGATCATTCCTTTTAGGTCGAACTGAAAATATATCATGCCAATTTTCATAGCGTAATGCCTGTACAAGTTGATATAAGTACAAGATAAGTTCCTCATCACTGGCAGCTTCCAAACGATGTACAGCGAACCTTCTACCGGCAGGATGAAGAAATTGACGAGTGAACAGTTCTAGGACATGTTCAGGCGCTATTGTTGGCCATTGTTTTAACAATTCAACAGCTTGATTCACTTGTTCTGTATATTCCCAACGAACAGATAAAATGAATTTCGCTAAAGAAGTTTCAGGGAATTTGTCAGCTAAATAAAATCGATACTTCCAGATAAGATCCCCATCTGACTCGGATATATTTAATCCCCGGTGGTAAATCAAGAACAAGTTTCAATCTATCTAATATGTCTTTATTAGGTTTACGTGCACGATCCACGTCAGCTGTACGAGCATTACGTGTC ] [+] EMBL CD187251 [ CAAACGATGTACAGCGAACCTTCTACCGGCAGGATGAAGAAATTGACGAGTGAACAGTTCTAGGACATGTTCAGGCGCTATTGTTGGCCATTGTTTTAACAATTCAACAGCTTGATTCACTTGTTCTGTATATTCCCAACGAACAGATAAAATGAATTTCGCTAAAGAAGTTTCAGGGAATTTGTCAGCTAAATAAAATCGATACTTCCAGATAAGATCCCCATCTGACTCGGATATATTTAAT CCCGGTGGTAAATCAAGAACAAGTTTCAATCTATCTAATATGTCTTTATTAGGTTTACGTGCACGATCCACGTCAGCTGTACGAGCATTACGTGTCATTTTAAAGTACTTTTCATCTACAGGATTCCATCGATCAGCTCGTAATTCTGACTGTTCAGGTAGAAATGGACGCTGAAATATTACAGGCATATACACAGATGGATGGCTTCGTGAAAACTCAAATTT] consensusID : consensus_8654#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 314 fasta sequence [ACATAACGAATGCCTTATCTGTCTCTTCCTTGATTTGTTTTAACAATTTTATTTAATTTTAAAAAACACAGTAAAAACTTACTGGACGCTGAAATATTACAGGCATATACACAGATGGATGGCTTCGTGAAAACTCAAATTTTACACTGAGAAATAAACGTCCGCTAGCTCGTTTTGCTTCATCAACTGCATGTTCCACATCTGGCATACAATGTCGATCTAATGGTGTTTCTAACAATTCATTACGAAGGTGTTTACGACTCGTCTAATAGAATAGTATGTGTAAAGAAAACCATTAGAAAAGTACGTAAACA] [+] EMBL CD196147 [ACATAACGAATGCCTTATCTGTCTCTTCCTTGATTTGTTTTAACAATTTTATTTAATTTTAAAAAACACAGTAAAAACTTACTGGACGCTGAAATATTACAGGCATATACACAGATGGATGGCTTCGTGAAAACTCAAATTTTACACTGAGAAATAAACGTCCGCTAGCTCGTTTTGCTTCATCAACTGCATGTTCCACATCTGGCATACAATGTCGATCTAATGGTGTTTCTAACAATTCATTACGAAGGTGTTTACGACTCGTCTAATAGAATAGTATGTGTAAAGAAAACCATTAGAAAAGTACGTAAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8654#0 AACCAAATGATCCTGGCGTAAATCATCACCATGTTTTAAAATAGCTCGATACGTATCGCC 60 consensus_8654#1 ------------------------------------------------------------ consensus_8654#0 ATTCGGTTGGATAAAAGTCAGTAATGCAGGTCGTTGAAAACTCTTGAATAGCGTAGCTGT 120 consensus_8654#1 ------------------ACATAACGAATGCCTTATCTGTCTCTTCCTTGATTTG--TTT 40 *** * * * * * ***** * * * * consensus_8654#0 AGACGATTGTACGCCGCATACAATAATA---TCCGGATTTAGAGGAAGTGGGAATGGTTT 177 consensus_8654#1 TAACAATTTTATTTAATTTTAAAAAACACAGTAAAAACTTACTGGACGCTGAAATATTAC 100 ** *** ** * ** ** * * * *** *** * * *** * consensus_8654#0 ATCAATATGCCTAATATGAGCATATTCTTCACTATCCAACTTTGATCTTAACAATTCAAT 237 consensus_8654#1 AGGCATATACACAG-ATGGATGGCTTCGTGAAAACTCAAATTTTACACTGAGAAATAAAC 159 * **** * * *** *** * * * *** *** * * * ** * ** consensus_8654#0 TTTACGTGAACGATTACCCAAATCATTGGTAACTGATTTTAGCAACCGACATA-AATCTT 296 consensus_8654#1 GTCCGCTAGCTCGTTTTGCT--TCATCAACTGCATGTTCCA-CATCTGGCATACAATGTC 216 * * ** * **** * ** * ** * * **** *** * consensus_8654#0 GAATGAATTGTGTTTGTTGTAGTAGTTCTATGTTCCATTTTTGACAAGTAGGACTACCAG 356 consensus_8654#1 GATCTAATGGTGTTT---CTAACAATTCATTACGAAGGTGTTTACGACTCGT-CTAATAG 272 ** *** ****** ** * *** * * ** ** * * * *** ** consensus_8654#0 CATCAAAAGCATGTAAAAGTCTGTTCAAAACATGTTTATACATCTTTTGAGTATCCGGTG 416 consensus_8654#1 AATAGTATGTGTAAAGAAAACCATTAGAAAAGTACGTAAACA------------------ 314 ** * * * * ** * ** *** * ** *** consensus_8654#0 AATTTACTGTATCCTGTTCCGAGAAATCATCTTCACCATCATTACTGTTTGCTTCCAACC 476 consensus_8654#1 ------------------------------------------------------------ consensus_8654#0 GTAGAAACCAATATAGGTAATTTGCAATACGAAAATNTAGTTGAGCACGTCTTATGAGGA 536 consensus_8654#1 ------------------------------------------------------------ consensus_8654#0 AACTGGCTAAATCTTCTTTCCATTCTTTTTTCAAATCAGAGTGCCATCCGATTAATTCTT 596 consensus_8654#1 ------------------------------------------------------------ consensus_8654#0 CACGACTACGTTCAATATTTGACAATGCACCACCTCGTCCAGTACGAAAAGATGATGGTA 656 consensus_8654#1 ------------------------------------------------------------ consensus_8654#0 TTTTACGATTTGATGTCAAATTTGTAGATTTCACCTCTTCAGAATTACCTTCTTTTATAA 716 consensus_8654#1 ------------------------------------------------------------ consensus_8654#0 CATCTGAAACATTACGTTTAGAAGTTCGATCATTCCTTTTAGGTCGAACTGAAAATATAT 776 consensus_8654#1 ------------------------------------------------------------ consensus_8654#0 CATGCCAATTTTCATAGCGTAATGCCTGTACAAGTTGATATAAGTACAAGATAAGTTCCT 836 consensus_8654#1 ------------------------------------------------------------ consensus_8654#0 CATCACTGGCAGCTTCCAAACGATGTACAGCGAACCTTCTACCGGCAGGATGAAGAAATT 896 consensus_8654#1 ------------------------------------------------------------ consensus_8654#0 GACGAGTGAACAGTTCTAGGACATGTTCAGGCGCTATTGTTGGCCATTGTTTTAACAATT 956 consensus_8654#1 ------------------------------------------------------------ consensus_8654#0 CAACAGCTTGATTCACTTGTTCTGTATATTCCCAACGAACAGATAAAATGAATTTCGCTA 1016 consensus_8654#1 ------------------------------------------------------------ consensus_8654#0 AAGAAGTTTCAGGGAATTTGTCAGCTAAATAAAATCGATACTTCCAGATAAGATCCCCAT 1076 consensus_8654#1 ------------------------------------------------------------ consensus_8654#0 CTGACTCGGATATATTTAATCCCGGTGGTAAATCAAGAACAAGTTTCAATCTATCTAATA 1136 consensus_8654#1 ------------------------------------------------------------ consensus_8654#0 TGTCTTTATTAGGTTTACGTGCACGATCCACGTCAGCTGTACGAGCATTACGTGTCATTT 1196 consensus_8654#1 ------------------------------------------------------------ consensus_8654#0 TAAAGTACTTTTCATCTACAGGATTCCATCGATCAGCTCGTAATTCTGACTGTTCAGGTA 1256 consensus_8654#1 ------------------------------------------------------------ consensus_8654#0 GAAATGGACGCTGAAATATTACAGGCATATACACAGATGGATGGCTTCGTGAAAACTCAA 1316 consensus_8654#1 ------------------------------------------------------------ consensus_8654#0 ATTT 1320 consensus_8654#1 ---- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||