These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8658#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1130 fasta sequence [TATATATATATATATATATATACATATATACATAAAGATATTTTATTCGCTTAGATAAGAATTAGGCAAATTAGTATATAAGAATAGCTATGAATATTTTTTTAAAAATAAAGCAATACACCCTATCATTTCCATTTGAAAGTTACCAAAAAACCAATATCACAGACAATAATA-GTGCCTTTGTGTGTGTAAAATAAAACCGAATG-CACGAGTATAAATTGTA-CATAATTGCTAAACTGTTAAGCCATGCAATAAATATATCAGCTGTGATTGTATAA-CAAAAATACAATATTATACTGTTAAGCCCAATGAGAAAACAATGGCAAAATATCTTTTA-AAAAAACTATTAGGATTGAAGTTACAGTAAATA-CGCTTATTTCAGAGAGGCA-CCAGTAGAGAAATCAAATATCCATAGACCTAAGGAAAAAAGAAACAACTTTCA-TAGAAAGTA-CGATTCTAAGAGAAAAAATATTGTGGAACTACAAACAACTGTTCATGCATGTGTATGTGTGTTTAATATGCTACACATACACGAAAGTTCATATTGGAGATAAAATATCGCAGATGAAGCATAGAACAAGAACATTGTTTTGTGATGCAAACGCTATGATGCTGGATTTACTGTAATGTAGTATGTGCCACTTAAATCCTCTTGACCACCATGTAATTCATTAAAAAATTATAGGGATCGATATTGGCAGTGAATTAAGCATCTCATTGAGAAGCACGTTCACGCATTTTATCTAATAACTGAATGAGTTGAATATCAAATCTTGGGCGTTTACCAGGATCATCTTTTGTACATAAATCAAATAGACGTACAATTCGACTGTCCATATTAGGTGGAATTGGAAGACGGAGATTTTCTGTAGTTATCTTCATTCCAATAATCATAGGATTCATTCCATCGAATGGTATCATACGAGTTGTTAATTCCCAAAGTATAACACCAAAACTCCACATATCTGAAGCTTCAAGATTTATTTCACTTGCTTTCTTTTGTAAAGATTCAGGTGACATCCAAGCTGGATTGTATTCTCGAGCTTTTTCATGAAATGAAAATTTGTAATCTGCCATATCTAAACGAGCAATTAACGATTCATCAGGTGTATTTGACTGTTGTATATTCT] [+] EMBL BF936145 [TATATATATATATATATATATACATATATACATAAAGATATTTTATTCGCTTAGATAAGAATTAGGCAAATTAGTATATAAGAATAGCTATGAATATTTTTTTAAAAATAAAGCAATACACCCTATCATTTCCATTTGAAAGTTACCAAAAAACCAATATCACAGACAATAATA GTGCCTTTGTGTGTGTAAAATAAAACCGAATGCCACGAGTATAAATTGTACCATAATTGCTAAACTGTTAAGCCATGCAATATATATATCAGCTGTGATTGTATAACCAAAAATACAATATTATACTGTTAAGCCCAATGAGAAAACAATGGCAAAATATCTTTTAGAAGAAACTATTAGGATTGAAGTTACAGTAAATACCCCTTATTTCAGAGAGGCACCCAGTAGAGAAATCAAATATCCATAGACCTAAGGAAAAAAGAAACAACTTTCATTAGAAAGTACCGATTCTAAGAGAAAAAATATTGTGGAACTACCAACAACTGTTCATGCc ] [+] EMBL CD075965 [ TAATAGGTGCCTTTGTGTGTGTAAAATAAAACCGAATG CACGAGTATAAATTGTA CATAATTGCTAAACTGTTAAGCCATGCAATAAATATATCAGCTGTGATTGTATAA CAAAAATACAATATTATACTGTTAAGCCCAATGAGAAAACAATGGCAAAATATCTTTTA AAAGAACTATTAGGATTGAAGTTACAGTAAATA CGCTTATTTCAGAGAGGCA CCAGTAGAGAAATCAAATATCCATAGACCTAAGGAAAAAAGAAACAACTTTCA TAGAAAGTA CGATTCTAAGAGAAAAAATATTGTGGAACTACAAACAGCTGTTCATGCATGTGTATGTGTGTTTAATATGCTACACATACACGAAAGTTCATATTGGAGATAAAATATCGCAGATGAAGCATAGAACAAGAACATTGTTTTGTGATGCAAACGCTATGATGCTGGATTTACTGTAATGTAGTATGTGCCACTTAAATCCTCTTGACCACCATGTAATTCATTAAAAAATTATAGGGATCGATATTGGCAGTGAATTAAGCATCTCATTGAGAAGCACGTTCACGCATTTTATCTAAT ] [+] EMBL CD075853 [ AATA GTGCCTTTGTGTGTGTAAAATAAAACCGAATG CACGAGTATAAATTGTA CATAATTGCTAAACTGTTAAGCCATGCAATAAATATATCAGCTGTGATTGTATAA CAAAAATACAATATTATACTGTTAAGCCCAATGAGAAAACAATGGCAAAATATCTTTTA AAAAAACTATTAGGATTGAAGTTACAGTAAATA CGCTTATTTCAGAGAGGCA CCAGTAGAGAAATCAAATATCCATAGACCTAAGGAAAAAAGAAACAACTTTCA TAGAAAGTA CGATTCTAAGAGAAAAAATATTGTGGAACTACAAACAGCTGTTCATGCATGTGTATGTGTGTTTAATATGCTACACATACACGAAAGTTCATATTGGAGATAAAATATCGCAGATGAAGCATAGAACAAGAACATTGTTTTGTGATGCAAACGCTATGATGCTGGATTTACTGTAATGTAGTATGTGCCACTTAAATCCTCTTGACCACCATGTAATTCATTAAAAAATTATAGGGATCGATATTGGCAGTGAATTAAGCATCTCATTGAGAAGCACGTTCACGCATTTTATCTAATAACTGAATGAGTTGAATATCAAATCTTGG ] [-] EMBL CD142254 [ TCAGAGAGGCA CCAGTAGAGAAATCAAATATCCATAGACCTAAGGAAAAAAGAAACAACTNTCA TAGAAAGTA CGATTCTAAGAGAAAAAATATTGTGGAACTACAAACAACTGTTCATGCATGTGTATGTGTGTTTAATATGCTACACATACACGAAAGTTCATATTGGAGATAAAATATCGCAGATGAAGCATAGAACAAGAACATTGTTTTGTGATGCAAACGCTATGATGCTGGATTTACTGTAATGTAGTATGTGCCACTTAAATCCTCTTGACCACCATGTAATTCATTAAAAAATTATAGGG ] [-] EMBL CD082244 [ TATCGCAGATGAAGCATAGAACAAGAACATTGTTTTGTGATGCAAACGCTATGATGCTGGATTTACTGTAATGTAGTATGTGCCACTTAAATCCTCTTGACCACCATGTAATTCATTAAAAAATTATAGGGATCGATATTGGCAGTGAATTAAGCATCTCATTGAGAAGCACGTTCACGCATTTTATCTAATAACTGAATGAGTTGAATATCAAATCTTGGGCGTTTACCAGGATCATCTTTTGTACATAAATCAAATAGACGTACAATTCGACTGTCCATATTAGGTGGAATTGGAAGACGGAGATTTTCTGTAGTTATCTTCATTCCAATAATCATAGGATTCATTCCATCGAATGGTATCATACGAGTTGTTAATTCCCAAAGTATAACACCAAAACTCCACATATCTGAAGCTTCAAGATTTATTTCACTTGCTTTCTTTTGTAAAGATTCAGGTGACATCCAAGCTGGATTGTATTCTCGAGCTTTTTCATGAAATGAAAATTTGTAATCTGCCATATCTAAACGAGCAATTAACGATTCATCAGGTGTATTTGACTGTTGTATATTCT] [-] EMBL CD082363 [ TTTGTACATAAATCAAATAGACGTACAATTCGACTGTCCATATTAGGTGGAATTGGAAGACGGAGATTTTCTGTAGTTATCTTCATTCCAATAATCATAGGATTCATTCCATCGAATGGTATCATACGAGTTGTTAATTCCCAAAGTATAACACCAAAACTCCACATATCTGAAGCTTCAAGATTTATTTCACTTGCTTTCTTTTGTAAAGATTCAGGTGACATCCAAGCTGGATTGTATTCTCGAGCTTTTTCATGAAATGAAAATTTGTAATCTGCCATATCTAAACGAGCAATTAACGATTCATCAGGTGTATTTGACTGTTGTATATTCT] consensusID : consensus_8658#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 203 fasta sequence [TATTATTTCATTACTTGAATTGATATGCCATTGATTAACAATTACCTTCATTCCAATAATCATAGGATTCATTCCATCGAATGGTATCATACGAGTTGTTAATTCCCAAAGTATAACACCAAAACTCCACATGTCTGAAGCTTCAAGATTTATTTCACTTGCTTTCTTTTGTAAAGCTATAGAGTTTTTTAAGAGACAAAAAA] [-] EMBL CD179876 [TATTATTTCATTACTTGAATTGATATGCCATTGATTAACAATTACCTTCATTCCAATAATCATAGGATTCATTCCATCGAATGGTATCATACGAGTTGTTAATTCCCAAAGTATAACACCAAAACTCCACATGTCTGAAGCTTCAAGATTTATTTCACTTGCTTTCTTTTGTAAAGCTATAGAGTTTTTTAAGAGACAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8658#0 TATATATATATATATATATATACATATATACATAAAGATATTTTATTCGCTTAGATAAGA 60 consensus_8658#1 ------------------------------------------------------------ consensus_8658#0 ATTAGGCAAATTAGTATATAAGAATAGCTATGAATATTTTTTTAAAAATAAAGCAATACA 120 consensus_8658#1 ------------------------------------------------------------ consensus_8658#0 CCCTATCATTTCCATTTGAAAGTTACCAAAAAACCAATATCACAGACAATAATAGTGCCT 180 consensus_8658#1 ------------------------------------------------------------ consensus_8658#0 TTGTGTGTGTAAAATAAAACCGAATGCACGAGTATAAATTGTACATAATTGCTAAACTGT 240 consensus_8658#1 ------------------------------------------------------------ consensus_8658#0 TAAGCCATGCAATAAATATATCAGCTGTGATTGTATAACAAAAATACAATATTATACTGT 300 consensus_8658#1 ------------------------------------------------------------ consensus_8658#0 TAAGCCCAATGAGAAAACAATGGCAAAATATCTTTTAAAAAAACTATTAGGATTGAAGTT 360 consensus_8658#1 ------------------------------------------------------------ consensus_8658#0 ACAGTAAATACGCTTATTTCAGAGAGGCACCAGTAGAGAAATCAAATATCCATAGACCTA 420 consensus_8658#1 ------------------------------------------------------------ consensus_8658#0 AGGAAAAAAGAAACAACTTTCATAGAAAGTACGATTCTAAGAGAAAAAATATTGTGGAAC 480 consensus_8658#1 ------------------------------------------------------------ consensus_8658#0 TACAAACAACTGTTCATGCATGTGTATGTGTGTTTAATATGCTACACATACACGAAAGTT 540 consensus_8658#1 ------------------------------------------------------------ consensus_8658#0 CATATTGGAGATAAAATATCGCAGATGAAGCATAGAACAAGAACATTGTTTTGTGATGCA 600 consensus_8658#1 ------------------------------------------------------------ consensus_8658#0 AACGCTATGATGCTGGATTTACTGTAATGTAGTATGTGCCACTTAAATCCTCTTGACCAC 660 consensus_8658#1 ------------------------------------------------------------ consensus_8658#0 CATGTAATTCATTAAAAAATTATAGGGATCGATATTGGCAGTGAATTAAGCATCTCATTG 720 consensus_8658#1 ------------------------------------------------------------ consensus_8658#0 AGAAGCACGTTCACGCATTTTATCTAATAACTGAATGAGTTGAATATCAAATCTTGGGCG 780 consensus_8658#1 ------------------------------------------------------------ consensus_8658#0 TTTACCAGGATCATCTTTTGTACATAAATCAAATAGACGTACAATTCGACTGTCCATATT 840 consensus_8658#1 -----------------------------------------------TATTATTT-CATT 12 * * * *** consensus_8658#0 AGGTGGAATTGGAAGACGGAGATTTTCTGTAGTTATCTTCATTCCAATAATCATAGGATT 900 consensus_8658#1 ACTTGAATTGATATGCCATTGATTA---ACAATTACCTTCATTCCAATAATCATAGGATT 69 * ** * * * * * **** * *** ************************ consensus_8658#0 CATTCCATCGAATGGTATCATACGAGTTGTTAATTCCCAAAGTATAACACCAAAACTCCA 960 consensus_8658#1 CATTCCATCGAATGGTATCATACGAGTTGTTAATTCCCAAAGTATAACACCAAAACTCCA 129 ************************************************************ consensus_8658#0 CATATCTGAAGCTTCAAGATTTATTTCACTTGCTTTCTTTTGTAAAGATTCAGGTGACAT 1020 consensus_8658#1 CATGTCTGAAGCTTCAAGATTTATTTCACTTGCTTTCTTTTGTAAAGCTATAGA-GTTTT 188 *** ******************************************* * ** * * consensus_8658#0 CCAAGCTGGATTGTATTCTCGAGCTTTTTCATGAAATGAAAATTTGTAATCTGCCATATC 1080 consensus_8658#1 TTAAGAGACAAAAAA--------------------------------------------- 203 *** * * consensus_8658#0 TAAACGAGCAATTAACGATTCATCAGGTGTATTTGACTGTTGTATATTCT 1130 consensus_8658#1 -------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||