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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8658#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1130 fasta sequence
[TATATATATATATATATATATACATATATACATAAAGATATTTTATTCGCTTAGATAAGAATTAGGCAAATTAGTATATAAGAATAGCTATGAATATTTTTTTAAAAATAAAGCAATACACCCTATCATTTCCATTTGAAAGTTACCAAAAAACCAATATCACAGACAATAATA-GTGCCTTTGTGTGTGTAAAATAAAACCGAATG-CACGAGTATAAATTGTA-CATAATTGCTAAACTGTTAAGCCATGCAATAAATATATCAGCTGTGATTGTATAA-CAAAAATACAATATTATACTGTTAAGCCCAATGAGAAAACAATGGCAAAATATCTTTTA-AAAAAACTATTAGGATTGAAGTTACAGTAAATA-CGCTTATTTCAGAGAGGCA-CCAGTAGAGAAATCAAATATCCATAGACCTAAGGAAAAAAGAAACAACTTTCA-TAGAAAGTA-CGATTCTAAGAGAAAAAATATTGTGGAACTACAAACAACTGTTCATGCATGTGTATGTGTGTTTAATATGCTACACATACACGAAAGTTCATATTGGAGATAAAATATCGCAGATGAAGCATAGAACAAGAACATTGTTTTGTGATGCAAACGCTATGATGCTGGATTTACTGTAATGTAGTATGTGCCACTTAAATCCTCTTGACCACCATGTAATTCATTAAAAAATTATAGGGATCGATATTGGCAGTGAATTAAGCATCTCATTGAGAAGCACGTTCACGCATTTTATCTAATAACTGAATGAGTTGAATATCAAATCTTGGGCGTTTACCAGGATCATCTTTTGTACATAAATCAAATAGACGTACAATTCGACTGTCCATATTAGGTGGAATTGGAAGACGGAGATTTTCTGTAGTTATCTTCATTCCAATAATCATAGGATTCATTCCATCGAATGGTATCATACGAGTTGTTAATTCCCAAAGTATAACACCAAAACTCCACATATCTGAAGCTTCAAGATTTATTTCACTTGCTTTCTTTTGTAAAGATTCAGGTGACATCCAAGCTGGATTGTATTCTCGAGCTTTTTCATGAAATGAAAATTTGTAATCTGCCATATCTAAACGAGCAATTAACGATTCATCAGGTGTATTTGACTGTTGTATATTCT]
[+] EMBL BF936145 [TATATATATATATATATATATACATATATACATAAAGATATTTTATTCGCTTAGATAAGAATTAGGCAAATTAGTATATAAGAATAGCTATGAATATTTTTTTAAAAATAAAGCAATACACCCTATCATTTCCATTTGAAAGTTACCAAAAAACCAATATCACAGACAATAATA GTGCCTTTGTGTGTGTAAAATAAAACCGAATGCCACGAGTATAAATTGTACCATAATTGCTAAACTGTTAAGCCATGCAATATATATATCAGCTGTGATTGTATAACCAAAAATACAATATTATACTGTTAAGCCCAATGAGAAAACAATGGCAAAATATCTTTTAGAAGAAACTATTAGGATTGAAGTTACAGTAAATACCCCTTATTTCAGAGAGGCACCCAGTAGAGAAATCAAATATCCATAGACCTAAGGAAAAAAGAAACAACTTTCATTAGAAAGTACCGATTCTAAGAGAAAAAATATTGTGGAACTACCAACAACTGTTCATGCc ]
[+] EMBL CD075965 [ TAATAGGTGCCTTTGTGTGTGTAAAATAAAACCGAATG CACGAGTATAAATTGTA CATAATTGCTAAACTGTTAAGCCATGCAATAAATATATCAGCTGTGATTGTATAA CAAAAATACAATATTATACTGTTAAGCCCAATGAGAAAACAATGGCAAAATATCTTTTA AAAGAACTATTAGGATTGAAGTTACAGTAAATA CGCTTATTTCAGAGAGGCA CCAGTAGAGAAATCAAATATCCATAGACCTAAGGAAAAAAGAAACAACTTTCA TAGAAAGTA CGATTCTAAGAGAAAAAATATTGTGGAACTACAAACAGCTGTTCATGCATGTGTATGTGTGTTTAATATGCTACACATACACGAAAGTTCATATTGGAGATAAAATATCGCAGATGAAGCATAGAACAAGAACATTGTTTTGTGATGCAAACGCTATGATGCTGGATTTACTGTAATGTAGTATGTGCCACTTAAATCCTCTTGACCACCATGTAATTCATTAAAAAATTATAGGGATCGATATTGGCAGTGAATTAAGCATCTCATTGAGAAGCACGTTCACGCATTTTATCTAAT ]
[+] EMBL CD075853 [ AATA GTGCCTTTGTGTGTGTAAAATAAAACCGAATG CACGAGTATAAATTGTA CATAATTGCTAAACTGTTAAGCCATGCAATAAATATATCAGCTGTGATTGTATAA CAAAAATACAATATTATACTGTTAAGCCCAATGAGAAAACAATGGCAAAATATCTTTTA AAAAAACTATTAGGATTGAAGTTACAGTAAATA CGCTTATTTCAGAGAGGCA CCAGTAGAGAAATCAAATATCCATAGACCTAAGGAAAAAAGAAACAACTTTCA TAGAAAGTA CGATTCTAAGAGAAAAAATATTGTGGAACTACAAACAGCTGTTCATGCATGTGTATGTGTGTTTAATATGCTACACATACACGAAAGTTCATATTGGAGATAAAATATCGCAGATGAAGCATAGAACAAGAACATTGTTTTGTGATGCAAACGCTATGATGCTGGATTTACTGTAATGTAGTATGTGCCACTTAAATCCTCTTGACCACCATGTAATTCATTAAAAAATTATAGGGATCGATATTGGCAGTGAATTAAGCATCTCATTGAGAAGCACGTTCACGCATTTTATCTAATAACTGAATGAGTTGAATATCAAATCTTGG ]
[-] EMBL CD142254 [ TCAGAGAGGCA CCAGTAGAGAAATCAAATATCCATAGACCTAAGGAAAAAAGAAACAACTNTCA TAGAAAGTA CGATTCTAAGAGAAAAAATATTGTGGAACTACAAACAACTGTTCATGCATGTGTATGTGTGTTTAATATGCTACACATACACGAAAGTTCATATTGGAGATAAAATATCGCAGATGAAGCATAGAACAAGAACATTGTTTTGTGATGCAAACGCTATGATGCTGGATTTACTGTAATGTAGTATGTGCCACTTAAATCCTCTTGACCACCATGTAATTCATTAAAAAATTATAGGG ]
[-] EMBL CD082244 [ TATCGCAGATGAAGCATAGAACAAGAACATTGTTTTGTGATGCAAACGCTATGATGCTGGATTTACTGTAATGTAGTATGTGCCACTTAAATCCTCTTGACCACCATGTAATTCATTAAAAAATTATAGGGATCGATATTGGCAGTGAATTAAGCATCTCATTGAGAAGCACGTTCACGCATTTTATCTAATAACTGAATGAGTTGAATATCAAATCTTGGGCGTTTACCAGGATCATCTTTTGTACATAAATCAAATAGACGTACAATTCGACTGTCCATATTAGGTGGAATTGGAAGACGGAGATTTTCTGTAGTTATCTTCATTCCAATAATCATAGGATTCATTCCATCGAATGGTATCATACGAGTTGTTAATTCCCAAAGTATAACACCAAAACTCCACATATCTGAAGCTTCAAGATTTATTTCACTTGCTTTCTTTTGTAAAGATTCAGGTGACATCCAAGCTGGATTGTATTCTCGAGCTTTTTCATGAAATGAAAATTTGTAATCTGCCATATCTAAACGAGCAATTAACGATTCATCAGGTGTATTTGACTGTTGTATATTCT]
[-] EMBL CD082363 [ TTTGTACATAAATCAAATAGACGTACAATTCGACTGTCCATATTAGGTGGAATTGGAAGACGGAGATTTTCTGTAGTTATCTTCATTCCAATAATCATAGGATTCATTCCATCGAATGGTATCATACGAGTTGTTAATTCCCAAAGTATAACACCAAAACTCCACATATCTGAAGCTTCAAGATTTATTTCACTTGCTTTCTTTTGTAAAGATTCAGGTGACATCCAAGCTGGATTGTATTCTCGAGCTTTTTCATGAAATGAAAATTTGTAATCTGCCATATCTAAACGAGCAATTAACGATTCATCAGGTGTATTTGACTGTTGTATATTCT]
consensusID : consensus_8658#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 203 fasta sequence
[TATTATTTCATTACTTGAATTGATATGCCATTGATTAACAATTACCTTCATTCCAATAATCATAGGATTCATTCCATCGAATGGTATCATACGAGTTGTTAATTCCCAAAGTATAACACCAAAACTCCACATGTCTGAAGCTTCAAGATTTATTTCACTTGCTTTCTTTTGTAAAGCTATAGAGTTTTTTAAGAGACAAAAAA]
[-] EMBL CD179876 [TATTATTTCATTACTTGAATTGATATGCCATTGATTAACAATTACCTTCATTCCAATAATCATAGGATTCATTCCATCGAATGGTATCATACGAGTTGTTAATTCCCAAAGTATAACACCAAAACTCCACATGTCTGAAGCTTCAAGATTTATTTCACTTGCTTTCTTTTGTAAAGCTATAGAGTTTTTTAAGAGACAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8658#0 TATATATATATATATATATATACATATATACATAAAGATATTTTATTCGCTTAGATAAGA 60
consensus_8658#1 ------------------------------------------------------------
consensus_8658#0 ATTAGGCAAATTAGTATATAAGAATAGCTATGAATATTTTTTTAAAAATAAAGCAATACA 120
consensus_8658#1 ------------------------------------------------------------
consensus_8658#0 CCCTATCATTTCCATTTGAAAGTTACCAAAAAACCAATATCACAGACAATAATAGTGCCT 180
consensus_8658#1 ------------------------------------------------------------
consensus_8658#0 TTGTGTGTGTAAAATAAAACCGAATGCACGAGTATAAATTGTACATAATTGCTAAACTGT 240
consensus_8658#1 ------------------------------------------------------------
consensus_8658#0 TAAGCCATGCAATAAATATATCAGCTGTGATTGTATAACAAAAATACAATATTATACTGT 300
consensus_8658#1 ------------------------------------------------------------
consensus_8658#0 TAAGCCCAATGAGAAAACAATGGCAAAATATCTTTTAAAAAAACTATTAGGATTGAAGTT 360
consensus_8658#1 ------------------------------------------------------------
consensus_8658#0 ACAGTAAATACGCTTATTTCAGAGAGGCACCAGTAGAGAAATCAAATATCCATAGACCTA 420
consensus_8658#1 ------------------------------------------------------------
consensus_8658#0 AGGAAAAAAGAAACAACTTTCATAGAAAGTACGATTCTAAGAGAAAAAATATTGTGGAAC 480
consensus_8658#1 ------------------------------------------------------------
consensus_8658#0 TACAAACAACTGTTCATGCATGTGTATGTGTGTTTAATATGCTACACATACACGAAAGTT 540
consensus_8658#1 ------------------------------------------------------------
consensus_8658#0 CATATTGGAGATAAAATATCGCAGATGAAGCATAGAACAAGAACATTGTTTTGTGATGCA 600
consensus_8658#1 ------------------------------------------------------------
consensus_8658#0 AACGCTATGATGCTGGATTTACTGTAATGTAGTATGTGCCACTTAAATCCTCTTGACCAC 660
consensus_8658#1 ------------------------------------------------------------
consensus_8658#0 CATGTAATTCATTAAAAAATTATAGGGATCGATATTGGCAGTGAATTAAGCATCTCATTG 720
consensus_8658#1 ------------------------------------------------------------
consensus_8658#0 AGAAGCACGTTCACGCATTTTATCTAATAACTGAATGAGTTGAATATCAAATCTTGGGCG 780
consensus_8658#1 ------------------------------------------------------------
consensus_8658#0 TTTACCAGGATCATCTTTTGTACATAAATCAAATAGACGTACAATTCGACTGTCCATATT 840
consensus_8658#1 -----------------------------------------------TATTATTT-CATT 12
* * * ***
consensus_8658#0 AGGTGGAATTGGAAGACGGAGATTTTCTGTAGTTATCTTCATTCCAATAATCATAGGATT 900
consensus_8658#1 ACTTGAATTGATATGCCATTGATTA---ACAATTACCTTCATTCCAATAATCATAGGATT 69
* ** * * * * * **** * *** ************************
consensus_8658#0 CATTCCATCGAATGGTATCATACGAGTTGTTAATTCCCAAAGTATAACACCAAAACTCCA 960
consensus_8658#1 CATTCCATCGAATGGTATCATACGAGTTGTTAATTCCCAAAGTATAACACCAAAACTCCA 129
************************************************************
consensus_8658#0 CATATCTGAAGCTTCAAGATTTATTTCACTTGCTTTCTTTTGTAAAGATTCAGGTGACAT 1020
consensus_8658#1 CATGTCTGAAGCTTCAAGATTTATTTCACTTGCTTTCTTTTGTAAAGCTATAGA-GTTTT 188
*** ******************************************* * ** * *
consensus_8658#0 CCAAGCTGGATTGTATTCTCGAGCTTTTTCATGAAATGAAAATTTGTAATCTGCCATATC 1080
consensus_8658#1 TTAAGAGACAAAAAA--------------------------------------------- 203
*** * *
consensus_8658#0 TAAACGAGCAATTAACGATTCATCAGGTGTATTTGACTGTTGTATATTCT 1130
consensus_8658#1 --------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||