These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8659#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1232 fasta sequence [CTCCGNAGGCCAAAAATTCGGCACGAGGCGACAACTCGACATTTTCCAATTTACTAAAAGCAAACCAAATATTGTTGCCGATCGCTTTCTGAATCCTGTTTAAGTTATTTTTTATATGGCATATTTTGACGAAGACCAAAATACCTATCTAAAGGATGTCTTCAAATTTTACAAACACTTAAACTATACACATGTTGTGCGCGAACAAATACGAAGATATACTGACTCAATTTTCAAGGTATTCAGCTAGTCGAATCATTCTCAGTAACAGAAAACAGTATTCACTAAATTATTGAATTCGCATTCAGATTGTTCAGTGCATACTATACCAACTGAAGATTTTTTCATATTAAAAAATTTCTTCAGTCCAATTGAAATTGAAGATTTATGGCTTGCTGCTCTGACAGAATGGTGTCACTCACCGACGGCTCAATGTAATTTAGGCACAAATGTGCCTCCTAATAGTCGGATTGCCTGTACTGATCCATGGTATTCTAAACTCCGTTGGATAACTTTAGGTTATCACTATCAGTGGAGCGAAAGAGTTTATAATGAATCTAAAGTTGGTGAATTTCCATCGTTGCTGTATGGGACTACAGTAAACATTATCAACTTCCTTAAGCATTTAATTGAGGGAAGGGAAATTTCTTCAAGTAATTCATCTCGCCTGTTAGAACAGTGCCAAAATTACACTCCAGAAGCGTCGATTGTGAACTATTATCGAACAAAAACAACTATGGGCTTCCATTCTGATGATGCGGAAGTAGATAAAGAAGCTCCTTTGGTGTCAATCAGCTNTGGACCCACTGCATTATTCTTACTAGAAACATCAGAAGCTATCAAGCATGAATTCGACGCTCCATTGCATGGGAGTTNTGACCACGTATTGCCAATTTACCTTCATCATGGTGATGTAGTAATAATGGCTGGTAAAAGTCGTCTGGCTCGTCATGCAGTCCCAGTAATTTTCTTTGATGATGATACCGAGGTTGTCTCAAAAGGAGCTCTTCGTGTTAGTCATAACGTTTGTGACAAAATTTTAAAGGAAGATCATAATGAGGGTGTTTGTATACATTGCCAAGAGTGTCTAACATACATTAGGACTACTCGTATAAATATGAATATACGCCAAGTAATGCCTGTCCATAGATGACGCGAATGATAATATTGTTTTATTTTACAATTATTCAGTATATTTGACTACCGAAAAAATTAAAAAAAACAATNCTGCC] [+] EMBL CD080288 [CTCCGNAGGCCAAAAATTCGGCACGAGGCGACAACTCGACATTTTCCAATTTACTAAAAGCAAACCAAATATTGTTGCCGATCGCTTTCTGAATCCTGTTTAAGTTATTTTTTATATGGCATATTTTGACGAAGACCAAAATACCTATCTAAAGGATGTCTTCAAATTTTACAAACACTTAAACTATACACATGTTGTGCGCGAACAAATACGAAGATATACTGACTCAATTTTCAAGGTATTCAGCTAGTCGAATCATTCTCAGTAACAGAAAACAGTATTCACTAAATTATTGAATTCGCATTCAGATTGTTCAGTGCATACTATACCAACTGAAGATTTTTTCATATTAAAAAATTTCTTCAGTCCAATTGAAATTGAAGATTTATGGCTTGCTGCTCTGACAGAATGGTGTCACTCACCGACGGCTCAATGTAATTTAGGCACAAATGTGCCTCCTAATAGTCGGATTGCCTGTACTGATCCATGGTATTCTAAACTCCGTTGGATAACTTTAGGTTATCACTATCAGTGGAGCGAAAGAGTTTATAATGAATCTAAAGTTGGTGAATTTCCATCGTTGCTGTATGGGACTACAGTAAACATTATCAACTTNCTTAAGCATTTAATTGAGGGAAGGGAA ] [+] EMBL CD082925 [ TTCGCATTCAGATTGTTCAGTGCATACTATACCAACTGAAGATTTTTTCATATTAAAAAATTTCTTCAGTCCAATTGAAATTGAAGATTTATGGCTTGCTGCTCTGACAGAATGGTGTCACTCACCGACGGCTCAATGTAATTTAGGCACAAATGTGCCTCCTAATAGTCGGATTGCCTGTACTGATCCATGGTATTCTAAACTCCGTTGGATAACTTTAGGTTATCACTATCAGTGGAGCGAAAGAGTTTATAATGAATCTAAAGTTGGTGAATTTCCATCGTTGCTGTATGGGACTACAGTAAACATTATCAACTTCCTTAAGCATTTAATTGAGGGAAGGGAAATTTCTTCAAGTAATTCATCTCGCCTGTTAGAACAGTGCCAAAATTACACTCCAGAAGCGTCGATTGTGAACTATTATCGAACAAAAACAACTATGGGCTTCCATTCTGATGATGCGGAAGTAGATAAAGAAGCTCCTTTGGTGTCAATCAGCTNTGGACCCACTGCATTATTCTTACTAGAAACATCAGAAGCTATCAAGCATGAATTCGACGCTCCATTGCATGGGAGTTNTGACCACGTATTGCCAATTTACCTTCATCATGGTGATGTAGTAATAATGG ] [-] EMBL CD074207 [ GTTTATAATGAATCTAAAGTTGGTGAATTTCCATCGTTGCTGTATGGGACTACAGTAAACATTATCAACTTCCTTAAGCATTTAATTGAGGGAAGGGAAATTTCTTCAAGTAATTCATCTCGCCTGTTAGAACAGTGCCAAAATTACACTCCAGAAGCGTCGATTGTGAACTATTATCGAACAAAAACAACTATGGGCTTCCATTCTGATGATGCGGAAGTAGATAAAGAAGCTCCTTTGGTGTCAATCAGCTTTGGACCCACTGCATTATTCTTACTAGAAACATCAGAAGCTATCAAGCATGAATTCGACGCTCCATTGCATGGGAGTTTTGACCACGTATTGCCAATTTACCTTCATCATGGTGATGTAGTAATAATGGCTGGTAAAAGTCGTCTGGCTCGTCATGCAGTCCCAGTAATTTTCTTTGATGATGATACCGAGGTTGTCTCAAAAGGAGCTCTTCGTGTTAGTCATAACGTTTGTGACAAAATTTTAAAGGAAGATCATAATGAGGGTGTTTGTATACATTGCCAAGAGTGTCTAACATACATTAGGACTACTCGTATAAATATGAATATACGCCAAGTAATGCCTGTCCATAGATGACGCGAATGATAATATTGTTTTATTTTACAATTATTCAGTATATTTGACTACCGAAAAAATTAAAAAAAACAATNCTGCC] consensusID : consensus_8659#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1125 fasta sequence [ACGAGGCCAGAATTCGGCACGAGGTCTGAATCCTGTTTAAGTTATTTTTTATATGGCATATTCTGACGAAGACCAAAATACCTATCTAAAGGATGTCTTCAAATTTTACAAACACTTACACTATACACATGTTGTGCGCGAACAAATACGAAGATATACTGACTCAATTTTCAAGAAAACAGTATTCACTAAATTATTGAATTCGCATTCAGATTGTTCAGTGCATACTATACCAACCGAAGATTTTTTCATATTAAAAAATTTCTTCAGTCCAATTGAAATTGAAGATTTATGGCTTGCTGCTCTGACAGAATGGTGTCACTCACCGACGGCTCAATGTAATTTAGGCACAAATGTGCCTCCTAATAGTCGGATTGCCTGTACTGATCCATGGTATTCTAAACTCCGTTGGATAACTTTAGGTTATCACTATCAGTGGAGCGAAAGAGTTTACAATGAATCTAAAGTTGGTGAATTTCCATCGTTGCTGTATGGGACTACAGTGAACATTATCAACTTCCTTAAGCATTTAATTGAGGGAAGGGAAATTTCTTCAAATAATTCATCTCGCCTGTTAGAACAGTGCCAAAATTACACTCCAGAAGCGTCAATTGTGAACTATTATCGAACAAAAACAACTATGGGCTTCCATTCTGATGATGCGGAAGTAGATAAAGAAGCTCCTTTGGTGTCAATCAGCTTTGGACCCACTGCATTATT-TTTACTAGAAACATCAGAAGCTATCAAGCATGAATTTGACGCTCCATTGCATGGGAGTTTTGACCACGTACTGCCAATTTACCTTCATCATGGTGATGTAGTAATAATGGCTGGTAAAAGTCGTTTGGCTCGTCATGCAGTCCCAGTAATTTTTTTTGATGATGATACCGAGGTTGTCTCAAAAGGAGCTTTTCGTGTTAGTCATAACGTTTGTGACAAAATTTTAAAGGAAGATCATAACGAGGGTGTTTGTATACATTGCCAAGAGTGTTTAACATACATTAGGACTACTTGTATAAATATGAATATACGCCAAGTAATGCCTGTCCATAGATGACGCGAATGATAATATTGTTTTATTTTTCAATTATTCAGTATATTTGACTACAGATACGATAATTTTTT] [+] EMBL CD079824 [ACGAGGCCAGAATTCGGCACGAGGTCTGAATCCTGTTTAAGTTATTTTTTATATGGCATATTCTGACGAAGACCAAAATACCTATCTAAAGGATGTCTTCAAATTTTACAAACACTTACACTATACACATGTTGTGCGCGAACAAATACGAAGATATACTGACTCAATTTTCAAGAAAACAGTATTCACTAAATTATTGAATTCGCATTCAGATTGTTCAGTGCATACTATACCAACCGAAGATTTTTTCATATTAAAAAATTTCTTCAGTCCAATTGAAATTGAAGATTTATGGCTTGCTGCTCTGACAGAATGGTGTCACTCACCGACGGCTCAATGTAATTTAGGCACAAATGTGCCTCCTAATAGTCGGATTGCCTGTACTGATCCATGGTATTCTAAACTCCGTTGGATAACTTTAGGTTATCACTATCAGTGGAGCGAAAGAGTTTACAATGAATCTAAAGTTGGTGAATTTCCATCGTTGCTGTATGGGACTACAGTGAACATTATCAACTTCCTTAAGCATTTAATTGAGGGAAGGGAAATTTCTTCAAATAATTCATCTCGCCTGTTAGAACAGTGCCAAAATTACACTCCAGAAGCGTCAATTGTGAACTATTATCGAACAAAAACAACTATGGGCTTCCATTCTGATGATGCGGAAGTAGATAAAGAAGCTCCTTTGGTGTCAATCAGCTTTGGACCCACTGCATTATTCTTTAC ] [-] EMBL CD074082 [ CTTCCTTAAGCATTTAATTGAGGGAAGGGAAATTTCTTCAAATAATTCATCTCGCCTGTTAGAACAGTGCCAAAATTACACTCCAGAAGCGTCAATTGTGAACTATTATCGAACAAAAACAACTATGGGCTTCCATTTTGATGATGCGGAAGTAGATAAAGAAGCTCCTTTGGTGTCAATCAGCTTTGGACCCACTGCATTATT TTTACTAGAAACATCAGAAGCTATCAAGCATGAATTTGACGCTCCATTGCATGGGAGTTTTGACCACGTACTGCCAATTTACCTTCATCATGGTGATGTAGTAATAATGGCTGGTAAAAGTCGTTTGGCTCGTCATGCAGTCCCAGTAATTTTTTTTGATGATGATACCGAGGTTGTCTCAAAAGGAGCTTTTCGTGTTAGTCATAACGTTTGTGACAAAATTTTAAAGGAAGATCATAACGAGGGTGTTTGTATACATTGCCAAGAGTGTTTAACATACATTAGGACTACTTGTATAAATATGAATATACGCCAAGTAATGCCTGTCCATAGATGACGCGAATGATAATATTGTTTTATTTTTCAATTATTCAGTATATTTGACTACAGATACGATAATTTTTT] [-] EMBL CD076509 [ AATTCATCTCGCCTGTTAGAACAGTGCCAAAATTACACTCCAGAAGCGTCGATTGTGAACTATTATCGAACAAAAACAACTATGGGCTTCCATTCTGATGATGCGGAAGTAGATAAAGAAGCTCCTTTGGTGTCAATCAGCTTTGGACCCACTGCATTATT TTTACTAGAAACATCAGAAGCTATCAAGCATGAATTCGACGCTCCATTGCATGGGAGTTTTGACCACGTATTGCCAATTTACCTTCATCATGGTGATGTAGTAATAATGGCTGGTAAAAGTCGTTTGGCTCGTCATGCAGTCCCAGTAATTTTTTTTGATGATGATACCGAGGTTGTCTCAAAAGGAGCTTTTCGTGTTAGTCATAACGTTTGTGACAAAATTTTAAAGGAAGATCATAATGAGGGTGTTTGTATACATTGCCAAGAGTGTTTAACATACATTAGGACTACTCGTATAAATATGAATATACGCCAAGTAATGCCTGTCCATAGATGACGCGAATGATAATATTGTTTTATTTTTCAATTATTCAGTATATT ] consensusID : consensus_8659#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence [TTGTGATTTGTGGCATGATCGCTTTCTGAATCCTGTCTAAGTTATTTTTTATATGGCATATTTTGACGAAGACCAAAATACCTATGTAAAGGATGTCTTCAAATTTTACACACACTTAAACTACACACATGTTGTGCGCGATCAAACACGAAGATATGCTGCCTCAATTTTCAAGAAAACAGTATTCACTCAATTATTGAATTCGCATTCAGATTGCTCAGTGCATACTAAACCAACCGAAGATTTTTTCATATTAAAAATATTCTTCAGTCCGAATCGAAATTGAAGATTTATGGCGTGCTGCCCTGACAGAATGGTGTCAGTCCCCGCTGGCTCAATGTAATTTAGGCACTAATGTGCCTCCTAATA] [-] EMBL CD061063 [TTGTGATTTGTGGCATGATCGCTTTCTGAATCCTGTCTAAGTTATTTTTTATATGGCATATTTTGACGAAGACCAAAATACCTATGTAAAGGATGTCTTCAAATTTTACACACACTTAAACTACACACATGTTGTGCGCGATCAAACACGAAGATATGCTGCCTCAATTTTCAAGAAAACAGTATTCACTCAATTATTGAATTCGCATTCAGATTGCTCAGTGCATACTAAACCAACCGAAGATTTTTTCATATTAAAAATATTCTTCAGTCCGAATCGAAATTGAAGATTTATGGCGTGCTGCCCTGACAGAATGGTGTCAGTCCCCGCTGGCTCAATGTAATTTAGGCACTAATGTGCCTCCTAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8659#0 CTCCGNAGGCCAAAAATTCGGCACGAGGCGACAACTCGACATTTTCCAATTTACTAAAAG 60 consensus_8659#1 -----------------------------------------------------------A 1 consensus_8659#2 ------------------------------------------------------------ consensus_8659#0 CAAACCAAATATTGTTGCC-GATCGCTTTCTGAATCCTGTTTAAGTTATTTTTTATATGG 119 consensus_8659#1 CGAGGCCAGAATT----CG-GCACGAGGTCTGAATCCTGTTTAAGTTATTTTTTATATGG 56 consensus_8659#2 ----TTGTGATTTGTGGCATGATCGCTTTCTGAATCCTGTCTAAGTTATTTTTTATATGG 56 ** * * ** ************ ******************* consensus_8659#0 CATATTTTGACGAAGACCAAAATACCTATCTAAAGGATGTCTTCAAATTTTACAAACACT 179 consensus_8659#1 CATATTCTGACGAAGACCAAAATACCTATCTAAAGGATGTCTTCAAATTTTACAAACACT 116 consensus_8659#2 CATATTTTGACGAAGACCAAAATACCTATGTAAAGGATGTCTTCAAATTTTACACACACT 116 ****** ********************** ************************ ***** consensus_8659#0 TAAACTATACACATGTTGTGCGCGAACAAATACGAAGATATACTGACTCAATTTTCAAGG 239 consensus_8659#1 TACACTATACACATGTTGTGCGCGAACAAATACGAAGATATACTGACTCAATTTTCA--- 173 consensus_8659#2 TAAACTACACACATGTTGTGCGCGATCAAACACGAAGATATGCTGCCTCAATTTTCA--- 173 ** **** ***************** **** ********** *** *********** consensus_8659#0 TATTCAGCTAGTCGAATCATTCTCAGTAACAGAAAACAGTATTCACTAAATTATTGAATT 299 consensus_8659#1 ------------------------------AGAAAACAGTATTCACTAAATTATTGAATT 203 consensus_8659#2 ------------------------------AGAAAACAGTATTCACTCAATTATTGAATT 203 ***************** ************ consensus_8659#0 CGCATTCAGATTGTTCAGTGCATACTATACCAACTGAAGATTTTTTCATATTAAAAAATT 359 consensus_8659#1 CGCATTCAGATTGTTCAGTGCATACTATACCAACCGAAGATTTTTTCATATTAAAAAATT 263 consensus_8659#2 CGCATTCAGATTGCTCAGTGCATACTAAACCAACCGAAGATTTTTTCATATTAAAAATAT 263 ************* ************* ****** ********************** * consensus_8659#0 TCTTCAGTCC-AATTGAAATTGAAGATTTATGGCTTGCTGCTCTGACAGAATGGTGTCAC 418 consensus_8659#1 TCTTCAGTCC-AATTGAAATTGAAGATTTATGGCTTGCTGCTCTGACAGAATGGTGTCAC 322 consensus_8659#2 TCTTCAGTCCGAATCGAAATTGAAGATTTATGGCGTGCTGCCCTGACAGAATGGTGTCAG 323 ********** *** ******************* ****** ***************** consensus_8659#0 TCACCGACGGCTCAATGTAATTTAGGCACAAATGTGCCTCCTAATAGTCGGATTGCCTGT 478 consensus_8659#1 TCACCGACGGCTCAATGTAATTTAGGCACAAATGTGCCTCCTAATAGTCGGATTGCCTGT 382 consensus_8659#2 TCCCCGCTGGCTCAATGTAATTTAGGCACTAATGTGCCTCCTAATA-------------- 369 ** *** ********************* **************** consensus_8659#0 ACTGATCCATGGTATTCTAAACTCCGTTGGATAACTTTAGGTTATCACTATCAGTGGAGC 538 consensus_8659#1 ACTGATCCATGGTATTCTAAACTCCGTTGGATAACTTTAGGTTATCACTATCAGTGGAGC 442 consensus_8659#2 ------------------------------------------------------------ consensus_8659#0 GAAAGAGTTTATAATGAATCTAAAGTTGGTGAATTTCCATCGTTGCTGTATGGGACTACA 598 consensus_8659#1 GAAAGAGTTTACAATGAATCTAAAGTTGGTGAATTTCCATCGTTGCTGTATGGGACTACA 502 consensus_8659#2 ------------------------------------------------------------ consensus_8659#0 GTAAACATTATCAACTTCCTTAAGCATTTAATTGAGGGAAGGGAAATTTCTTCAAGTAAT 658 consensus_8659#1 GTGAACATTATCAACTTCCTTAAGCATTTAATTGAGGGAAGGGAAATTTCTTCAAATAAT 562 consensus_8659#2 ------------------------------------------------------------ consensus_8659#0 TCATCTCGCCTGTTAGAACAGTGCCAAAATTACACTCCAGAAGCGTCGATTGTGAACTAT 718 consensus_8659#1 TCATCTCGCCTGTTAGAACAGTGCCAAAATTACACTCCAGAAGCGTCAATTGTGAACTAT 622 consensus_8659#2 ------------------------------------------------------------ consensus_8659#0 TATCGAACAAAAACAACTATGGGCTTCCATTCTGATGATGCGGAAGTAGATAAAGAAGCT 778 consensus_8659#1 TATCGAACAAAAACAACTATGGGCTTCCATTCTGATGATGCGGAAGTAGATAAAGAAGCT 682 consensus_8659#2 ------------------------------------------------------------ consensus_8659#0 CCTTTGGTGTCAATCAGCTNTGGACCCACTGCATTATTCTTACTAGAAACATCAGAAGCT 838 consensus_8659#1 CCTTTGGTGTCAATCAGCTTTGGACCCACTGCATTATTTTTACTAGAAACATCAGAAGCT 742 consensus_8659#2 ------------------------------------------------------------ consensus_8659#0 ATCAAGCATGAATTCGACGCTCCATTGCATGGGAGTTNTGACCACGTATTGCCAATTTAC 898 consensus_8659#1 ATCAAGCATGAATTTGACGCTCCATTGCATGGGAGTTTTGACCACGTACTGCCAATTTAC 802 consensus_8659#2 ------------------------------------------------------------ consensus_8659#0 CTTCATCATGGTGATGTAGTAATAATGGCTGGTAAAAGTCGTCTGGCTCGTCATGCAGTC 958 consensus_8659#1 CTTCATCATGGTGATGTAGTAATAATGGCTGGTAAAAGTCGTTTGGCTCGTCATGCAGTC 862 consensus_8659#2 ------------------------------------------------------------ consensus_8659#0 CCAGTAATTTTCTTTGATGATGATACCGAGGTTGTCTCAAAAGGAGCTCTTCGTGTTAGT 1018 consensus_8659#1 CCAGTAATTTTTTTTGATGATGATACCGAGGTTGTCTCAAAAGGAGCTTTTCGTGTTAGT 922 consensus_8659#2 ------------------------------------------------------------ consensus_8659#0 CATAACGTTTGTGACAAAATTTTAAAGGAAGATCATAATGAGGGTGTTTGTATACATTGC 1078 consensus_8659#1 CATAACGTTTGTGACAAAATTTTAAAGGAAGATCATAACGAGGGTGTTTGTATACATTGC 982 consensus_8659#2 ------------------------------------------------------------ consensus_8659#0 CAAGAGTGTCTAACATACATTAGGACTACTCGTATAAATATGAATATACGCCAAGTAATG 1138 consensus_8659#1 CAAGAGTGTTTAACATACATTAGGACTACTTGTATAAATATGAATATACGCCAAGTAATG 1042 consensus_8659#2 ------------------------------------------------------------ consensus_8659#0 CCTGTCCATAGATGACGCGAATGATAATATTGTTTTATTTTACAATTATTCAGTATATTT 1198 consensus_8659#1 CCTGTCCATAGATGACGCGAATGATAATATTGTTTTATTTTTCAATTATTCAGTATATTT 1102 consensus_8659#2 ------------------------------------------------------------ consensus_8659#0 GACTACCGAAAAAATTAAAAAAAACAATNCTGCC 1232 consensus_8659#1 GACTACAGATACGATAATTTTTT----------- 1125 consensus_8659#2 ---------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||